>input_sequence_72003
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--------------------------ATGACAGTACTCATGGCAGAAGAAGCAGGCAACTACGGCGACTACCACATCCTC
ACCATTGAACCTGAACCTGAACCAGATCAGCCTGCCGTCGACGACGCCGAGGGCAG---------CAACGACGACGATCC
GACGATCCTTCTGCTTGGCATGCTGGGCCTGTGCCTTTTGCTCGTGATTTGTGCAGGCTTCTCCTTCTTC----------
--ATCCGA------------GGTCTGGAGCCCGGGTACTCGGTCCAGTTGACAGGCGTCCAAGGGCTTGACCCCTCGCAG
AACCCTGCCGTCTCGCCGGCCTTCAACCTCACCGTCCACGTCAACAACAGGCATCACATGCGACGAGTCTGCCAGGAGGA
GAGCTACCTGGTCATTTACTACGACGAATCGAGCGGAGACGCTAACAACACAAGCATCGGATGGGGCAAGCTGCCCGCCT
TCTGCGTCGAGAGATGGTCGACCAGGGATCTCGACGTGTCCTTGTCTAGTCAGGGCGTGTTCCTCTCTCGGAGGTTGCAG
GAGAAGATGGAGTCCCACCGGCAAAGCCAAAAAATGGAGCTAAGCGTTGAGATCAAGCCAACCTGTCC---GGAGGAGTC
CTCTAGGCCATGCCTCACCTTGTGTGAGGGCAAGT---ACGGCCGGTCCCTCGCAGCTGCCCCAGCGATGCTGTGCTACA
CAGTATGTGCGAGTGCGACATAA---------------------------------------------------------
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>chr3D_1_TraesCS3D01G133600
ATATATATCAACCTGACCCTGTACCGATCGATCACATTCTTGGAACAAAAAAGAACCTTGTATCACTAGTCTCTGCCCGA
GTCATGGGGTAGATGCGGCAGGGGGAGGGGGGCTGG---TGAGACTGCCCGCCCAGCGTGGCCTTGCACCATAGCCAGTG
GCATCTTTTTTCACCGGTTGAGGTGCCATCATCAAACAGCAAATCGGTACACTGTGTCATCTCGACCTGAAGCAACCCTG
ATGTCCCGTTGGCCAT------GCTTAGCCCGACCAAGTCGGTCGACGTCGTCGCCGTCACCACCGCTTCCGTCATGTTC
TTCAGGCATGTCTTGGGGAAGTAAGCCTTACCCAGGGGTGCCCCGCCGTACCAGACATCAGCCTCCCATCTCGTGACGCA
CATCTCGCGCCGCTCGTGGCGGCTGGTGACGCGCGCGGTGAGGTTGAAGCGCAAGCGCGTCGCGTCGTCGCGCGGAGTCT
GGAAGCTG------------GATGCCTCGATGCCGGTGATTTCCACTTGGTGGTAACTTTTCTCCGGATAGTTTGGTGTG
ACGAGAGGAATTA------------CAACCTCGGACATAAGCAAGAGGAACAAGCCGGCAGAGAACAAGATGGCAAGCCA
GATCAGCGGGTATTTGGCTTTCTTGA------AAAGCCAAGCGATCGCCGACGGAAACTCCATGTTTTGTGTATGTATAT
AAT-----------------------------------------------------------------------------
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------------------------------------ACCTAACAGAGGGGTGCCCAAGTTTGTCGGCGGACAGGCGAGAC
AAGTTTTTCTGTTATAGCAATCTTCTATATATATATACACA-----GAGGAGAGGAGA-GAGACGAGTTGATCAACCAGA
TGCAGAATCGACGTCGGTTCAGATTTCAGACTCCAATTCAAATCTTAATCTGCAGTCCGGTCGCATCACGGCAGGCAGGG
AGATGTCATCGG--TTCAGACTCGAATTTGTTTAATCTTCAAAGTCCTCCCTCCC-------------------------
-----------------------------------------ATATATACGCACCGCCGCAGACCCTAATTAAGCTTGGCC
TTTAGATCTGCGAGCGTTTGTTTACCATGACAGTACTCATGGCAGAAGAAGCAGGCAACTACGGCGACTACCACATCCTC
ACCATTGAACCTGAACCTGAACCAGATCAGCCTGCCGTCGACGACGCCGAGGGCAG---------CAACGACGACGATCC
GACGATCCTTCTGCTTGGCATGCTGGGCCTGTGCCTTTTGCTCGTGATTTGTGCAGGCTTCTCCTTCTTC----------
--ATCCGA------------GGTCTGGAGCCCGGGTACTCGGTCCAGTTGACAGGCGTCCAAGGGCTTGACCCCTCGCAG
AACCCTGCCGTCTCGCCGGCCTTCAACCTCACCGTCCACGTCAACAACAGGCATCACATGCGACGAGTCTGCCAGGAGGA
GAGCTACCTGGTCATTTACTACGACGAATCGAGCGGAGACGCTAACAACACAAGCATCGGATGGGGCAAGCTGCCCGCCT
TCTGCGTCGAGAGATGGTCGACCAGGGATCTCGACGTGTCCTTGTCTAGTCAGGGCGTGTTCCTCTCTCGGAGGTTGCAG
GAGAAGATGGAGTCCCACCGGCAAAGCCAAAAAATGGAGCTAAGCGTTGAGATCAAGCCAACCTGTCC---GGAGGAGTC
CTCTAGGCCATGCCTCACCTTGTGTGAGGGCAAGT---ACGGCCGGTCCCTCGCAGCTGCCCCAGCGATGCTGTGCTACA
CAGTATGTGCGAGTGCGACATAAAGGAGTATAGTATATTACAGGGATCATCAACAACGCACTCCTA-TCACCATAGATAT
TCAGTTGTACTACACCTAAAAAAGATATTTCAGTTCTACTAAATGCAATATTATTCACTTCAGCTTTGACAAAGCATGTA
CAAAACTTCAGTCTATTTAGTGTTTTTGTGTATTATGCGCCTGGCCAATCTTTTTCTGCTTTCAATCCATTGGAAAGGCC
GGCTAGTGACCAACACATTAAAGGAACCTCCTTCTCAACTTGATTCCCACTCTCATCAATACGCTGTGAAGCATGTTTAT
ATACAGGCGATCCACTCAGAATCAAGGGGTTGTGTATACTACTAATATATACAGTCCGATGCATCTTCATACGTAAACCA
CCTCTGAAGTTTCAGTCATCAGCAAGCCACATACC---------------------------------------------
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------------------------------------------------------------------------AATGGCCA
AAGGGTTTGGGTTTGAGTTAATGGACTAGTGTCACATTTCGCTCAATAGAGTTAATGGACTCGTGACGCATTTCGCCTAG
TTAATCTGAACTCTATATATAATTCTGGATCCTATATATAATTGGATCCTTTATTCATGGAGTATCTACAACCTTTCGCC
TTGTGATGCACTTTG-CTAGTTAATCTGAGCTCTATATATAATTGGATCCTTTATTCATGGGGTATATAGAACTTTATAC
AGTTTGGGAAGAGGTTTAGAAGAATCTACTTCAACCGCAACATATTGCTAGAATCGCTTGAACTAGACTCTTCACGGTGA
GCATCTAGATA---------------TTACGGCCACACAGAAAGCTACAAGTTAGTTGTAGCTGCACTCTACCGGCACAT
GGAAGTTGAACCTTGCCTTGTCATCACAGTAGTTATAGGTCATCTACTTGCTTTTGACATTTTTGTACACTGCCTTCTGC
GCGGGCGTTAGGTCCCGAAACTTGTTCCACCATAGGTTGGGGGAACCATACGGCACACCTCCGGTACTCAATGTTTGTGT
CCAAGCCGTGACACCAATATGTTTAAAAATTTCTTTC
>chr3B_1
ATATATATCAACCTGACCCTATACCGATCGATCACATTCTTGGAACAAGAAAGAACCTTGTATCACTAGTCTCTGCCCGA
GTCATGGGGTAGATGCGGCAGGGGGAGGGGGGCTGG---TGAGACTGCCCGCCCAACGTGGCCTTGCACCATAGCCAGTG
GCATCTTTTTTCACCGGTTGAGGTGCCATCATCAAACAGCAAATCGGTGCACTGTGTCATCTCGACCTGAAGCAACCCCG
ATGTCCCGTTGGCCAT------GCTTAGCCCGAGCAAGTCGGTCGACGTCGTCGCCGTCACCACCGCTTCTGTCATGTTC
TTCAGGCATGTCTTGGGGAAGTACGCCTTACCCAGGGGTGCCCCGCCGTACCACACATCAGCCTCCCAGATGGTCACGCA
CATCTCGCGCCGCTCGTGGCGGCTGGTGACGCGCGCGGTGAGGTTGAAGC---------------------GCGGAGTCT
GGAAGCTG------------GATGCCTCGATGCCGGTGATTTCTACTTGGTGGTAACTTTTCTCCGGATAGTTTGGTGTG
ACGAGAGGAATTA------------CAACCTCGGACATAAGCAAGAGGAACAGGCCGGCAGAGAACAAGATGGCAAGCCA
GATCAGCGGGTATTTGGCTTTCTTGA------AAAACCAAGCGATCGCCGACGGAAACTCCATGTTTTGTGTATGTATAT
AAT-----------------------------------------------------------------------------
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------------------------------------ACCC-----AGGGGTGCCCAAGTTTGTCGGCGGACAGGCGAGAC
GAGTTTTTCTGTTATAGCAATCTTCTATATATATATACACAGAGGAGAGGAGAGGAGA-GAGACGAGTTGATCAAGCAGA
TGCGGAATCGACGTCGGTTCAGATTTCAGACTCCAATTCAAATCTCAATCTGCAGTCCGGTCGCATCACGGCAGGCAGGG
AGATGTCACCGG--TTCAGACTCGAGTTTGTTTAATCCTCAAAGTCCTCCCTCCC-------------------------
-----------------------------------------ATATATACGCAGCGCCGCAGACCCTAA----GCGTGGCC
TTTAGATCTGCGAGCGTTTGTTTACCATGACAGTACCCATGGCAGAAGAACCGGGCAACTACGGCGACTACTACGTCCTC
ACCATTGAACCTGAACC------AGATCAGCCTGCCGTCGACGACGCCGAGAGCAG---------CAACGACGACGACCC
GACGATCCTTCTGCTTGGCATGCTGGGGCTGTGCCTTTTGCTCGTGATCTGTGCAGGCTTCTCCTTCTTC----------
--ATCCGA------------GGTCTGGAGCCCGGGTACTCGGTCCAGTTGACAGGAGTCCAAGGGCTTGACCCCTCGCAG
AACCCTGCCGTCTCGCCGGCCTTCAACCTCACCGTCCACGTCAACAACAAGCAGCACATGCGGCGAGTCTGCCAGGAGGA
GAGCTACCTGGTCGTGTACTACGATGAATCGAGCGGAGACGCTAACAACACAAGCATCGGATGGGGCAAGCTGCCCGCCT
TCTGCGTGGAGAGGTGGTCGGCCAGGGATCTCGACGTGTCCTTGTCTAGTCATGGCGTGTTCCTCTCTCGGAGGTTGCAG
GAGAAGATGGAGTCGCACCGGCAAAGCCAAAAAATGGAGCTAAGCGTTGAGATCAAGCCAACCCGTCC---GGAGGAGTC
CTCTAGGCCATGCCTCACCTTGTGTGAGGGCAAGT---ACGGCCGGTCCCTCGCAGCTGCCCCGGCGATGCTGTGCTACA
CAGTATGTGCGAGTGCGACATAAAGGAGTATAGTATACTACAGGGATCATCAACGACGCACTCCTA-TCACCATAGATAT
TCAGCTGTACTACAGCTAAAAAAGATATTTCAGTTCTACTAAATGCAATATTATTCACTTCAGGTTTGACAAAGCATGTA
CAAAACTTCAGTCTATTTAGTATTTTTGTGACCAT-------------TCTTTTTCTGCTTTCAATCCATTGGAAAGGCC
GGCTAGTGACCAACACATGAAAGGATTCTCCTTCTCAACTTGATTCCCACT----------CGCTATGAAGCATGTTTAT
ATACAGGTAGAACTGTATATCTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACACGGGGGCGAACCCCTAGATCCGGCGC
CAGGCACCCCCGCCCGCCTCCTCCTCCCTCCGCCGCCGTCGGCTGCCGTGGTGGTGAGGTCGTGGGATCCCAGCGGAGGT
GCTGCTCTGCTCCCTCATGCCCGAGCTGCCCGGCGGCATTGTTCAATCGGCTCTAGGGTGAGCACTCTACCTTCCGACGG
TTCGGCGCCCTTCGAGCCAGGGCGAGAGGATTGTGGTCTTCTTCGGAGGTAGAAGCGAGTGGCTTGTCGACCTTGGCATG
ATCTGCGGGAGTAGGCGAGTAGATGTTGGTTGTCGATGCTGGTTTCTTCCTGCCCTCACCCTGCTGCTGGTGTGGCTATT
GCTCATGGCGTCTGACCTTGGTGATCTTGGCTAGGCTCCTATTACTATCTCTTGTTTGCCTGTATCACAAATAGGTTGTA
AGCTGCTACAGCTCTCTATATCTTTGCCGTTTCTGTTTCTATCCTATTGTACGCTTTCTTGTAATCCTGGCCGGTTGATG
GCTTTATTAATTCAAAGCCGGGTTAGGTTCGAGCCTTTTCTCGGGCTTGGCGGACACCTTTTCTCTAAAAAAAATGGCCA
AAGGGTTTGGGTTTGAGTGAATGGACTAGTGACACATTTCGCTCAGTAGAGTTAATGGACTAGTGACGCATTTCGCCTAG
TTAATCTGAACTCTATATATAAT------------------TTGGATCCTTTATTCATGGAGTATCTACAACCTTTCGTC
TTGTGACACATTTCACCTAGTTAATCTGAGCTTTATATATAACTGGATCCTTTATTCATGGGGTATCTAGAACCTTGTAC
AGTTTGGGAAAAGGTTTAGAAGAATCTACTTCAACCGCAACA-ATTGCTAGAATCGGTTGAACTAGACTTTTCACGAGCG
AGCATTTACATATTACATAAATTTGTTTACGGCCACACGGAAAGCTTCTAGTTAGTTGTGGCTGCACTCTACCGGAACAC
GGAAGTTGAACCTTGCCTTGTCATCACAGTAGTTGTAGGTCATGTACTTGCTCTTGACATTTTTGTACGCTGCCTTCTGT
GCGGGCGTCAGGTCCCAAAACTTGTTCCACCACAGGTTGGGCGAGCCACACGGCGCACCTCCGGT---------------
-------------------------------------
>chr3A_61
TATCG------------------------------------------------------------CTAGTCTCCGCACGC
GTGAGGTGGTAGATGCGGCAGGGGGAAGCAGGTGACTGTTGAGATTGCCCACCCAACGTGGCCTCGCACCATAGCCAGTG
CCATCCTGTTTGGCCCCTATG------ATCACCAAACAGCAGATTGGTACGCTGTGTCATCTCGATCTGAACCGTCCCTG
ATGTTGCGTTGGCCATGCTTATGCTTAGCCCGGCCAACTCGGTTGACGTCGTCGCCGTCGCCGCCGCTTCTGTCATCTTC
TCCAGGCATGTATCGGGGAAGTAAGCCTTGCCAAGGTGTGTCCCGTCGTGCCACACGTCAGCCTCCCAGTTGGCCACGCA
CATCTCGTGGCGCTTGTAGCGGCTGATCACGCGCGCGCCGAGGTTGAAGC---------------------GCAAGCGCG
TCGCGTCGTCTTGCAGAGTTGATGCCTCGACGCCGGTGATCTCCACTTGGTGGTGCCCTTCCTCCACAAACTCTGCTTGG
ATGATCTCAGACAGGTGAGGGGATGCAAGCTCGAACACGAGCAGGAGGAACAAGGCGAGAGACAAGACGAGGGCAAGCAA
GAGCAGCGGCTTTTTGGCTTTCTCCCAAAGCCAAACCAATGCGTTCGCAGACGGAAGTACCATGTTTTCCTTCCGTAATC
TCTACTTTTAATGTCTCAGTTGGTAGGTCGCGTTCCGGGTTTTATTTTCGTCCCACCTCACCCGGTCTTTTTTGGTACTT
CTTTGGTACTTCCTCCCACCTCCCACCCGTTTTATTTCGCTGGGTTTTTTTCGTTCCTCCCCCACCCCACCGGTTTAGTT
TCGCGTCACCCTCTCACACAACGAAAAAAATCTTAACGGATCATAACTTTCCATGCTGGTGCAAGTTATTTTTAGTAATG
TCTTTATGTGAAAGAATCAATCACGATCAATCTCTAAATATCAAATCTAAATTAATTAACCTTACCTTAAATTGCTCAAT
CACATTAATTAGGAAACAAAATAACCGATTTTAAGAAAATATCTACTCTTAATGGAGGGTATTACATACCAAACATAGGT
ACGTCATTAGCTCGCTTCCTTCCCTTCTCTTCCCTTCGTCCCTCAGTCCCATGCTCGTGGCGCTGAAGTGGCATCGACAG
GCGATGGCGGCGAGGACAGCACGTGGCAGCCCCTGAAGCACGAACACGACTGCACCTCGGGTCTGCCGTCTCCCAAGATA
TGGGTGAGTTCTCGTGATGCCCACCCTAAACCCTCACTCCTACATATTCCTCAACCTCTACCATCTCGATTTTATCCATG
CTCTGATCCAAATGACGATGCAGCTCCGGCCGATTGACAATGGAGGTTTGCCATCCTTCCTCTCAGCACCCACTCCTGGA
GGAACGACACGCCATGCCGATCGAACCCGGTCGAGATCACTCACCAAGATTGCTATTCGGAAGTTTTTTGTCAAAAAGTG
AAGAGTGGGATGGGATTTGCACTTTTGTTAATATCTCTACTCCTAATGTCTCAGTTGGTAGGTCGCGTTCCGGGTTTTAT
TTTCGTCCCACCTCACCCGGTCTTTTTTGGTACTTCTTTGGTACTTGCTCCCACCTCCCGCTCAGCCGAGACGGTTTATT
TTCGTACTCCCTCCCATCTCCCAGGTAGTTCCCTCCACACACAAAAAATCGAACCAACCAATCTCTACTCCTAATGGAGC
AGTTGGTAGTCTTCGCCGGTCAATTTTCGTCCCACCACTTTCGTCCGGGTTTTTTCGTAGGTTAACTGTCGTAGATTTTT
TTCGTCGCCTCCCCCACTTCATCGGTTTATTTTCACTTCACCCTCTCACACAACGAAAAAAACTGAACGGATCAGAACTT
TCCATACTGACGCAAATTATTTAGTAATGTCTTTATGTAAAAGAATCAATCACAATCAATCTCTAAAGATCAAATCTAAA
TTAATTAATCTTCATAACGTTTGTTTCCTTTCGAATCACGTCCATAACTTTCCTTTCTTGTTTGGGCAAAAACTGTTTGG
TAGCAGAGATTAGGAAGCTTCCTATGAATGTAGTAATAGGAAGTATTCTTTTTCTTGATGATTCGTTTCCATGCATGATG
ATAGTAAATTATGCCAACATTCACCATTATTTATCAATGTCATCAATCGTATCCATTTCTACCAGTTTTAAGGGAATCTG
CTCGCTATGTCTTTTTTAAGGGGATCCGCTCGCTAAGTCGTCGTCGCATATTATTTTCATAAACAATCTCTACTCCTAAT
GGAGCAGTTGGTAGCCTCGTAAGGTTTATTTTTGTCCTCCTCCCACCTCCCCTGGTTTTTTTTCATCCTCTCTCCCACCT
CCCAATTTTGTTGGTTTTTTTTGTCGGTTTTTACTCGCCCCCTCCCACCTCCCAATTTCGTCCGGTTTTTATTCGTCCCA
CCTCCCACCACACCCTCGTACCGGTTCTTTTTCTCTCCACTCTTTCCTTGCAAACCAATAATTTCCTAACATACAAAAGA
TCACGAATCTATCTTTCCTTACCCGAACCAATCGCGCCCTACATCAGTGCATTTCTTTATTAAGAAAACTAACACGTAAA
TCTTAACGCATTGCAAACAAATCCCGTTATGGACCTAATTAATTTATTATGGAATCTATATGTGGTCGCATTGGTTCTTT
TTCTCTCCACTCTTTCCTTGCAAACCACTAATTTCCTAACATAGAAAAGATCACGAATCTATCTTTCCTTATCCGAATCA
ATCGATCCCTACATCAGTGCATTTCTTTATTAAGAAAACTAACACGTAAATCTTAACGCATTGTGAAGAAATCCCGTTAT
GGACCTAATTAATTTATTATGGAATCTGTACGTGGTCGCATCTCTCCCCTCGTGAAAAAATCGCATCCATCTCCCGTTAA
AAAGGAAAAGAGAACATGAACGATCAATCCCACACCCTGCATCTCAGTAGCAAAAAATCGACCCCGCCTCTGCTATTGCG
CCTCACCGTGTGCCCGGCTCGACCCATGCCTCGCCTGCATGGCTGGACGCCGCCGTCTCCACCGCCACGTGCAAGAAAAC
GGTGGGCAGAACCATCCATTCAAATCGCACACCCCCACCCTCCTCCGCAATCCCTAGCCCCGCATCACCTCTAGCGCTTT
CTCGCCTCTCTTTCCCCTCGATGTAGATGGTGCCGAGCGGCGGCCTCGAGCACCGGCAGTGCCGCCCTCTCTATCTTTGC
TGCGTCGAGAGATGGGCCGAGGCTATCATCGGTTCGCCGCCCACGATTGGGCCGCCTCCGGTTGTCGCGCACCACTGGCT
CCACCTAACGTGCCCGACCCTCTCCGCTTTCGACCTTCCGGTGACCACATCCCTCCGCGCCTCCATCCATCATCCACAAG
GCCACTCCCTGCACCCACCCTCCTAAATTCTCCATACCGGCGGACAATCACCGAAGATCCAAGTTGGCCCAATATCAATT
TTCTTACATGCTTTCTTTATCAGTTGGTGATGGGAATGGGTTCCAATTTCTCTCTCTGACTGTGGATTCGCAGGCAAGAA
GCGCTTGTACATGCATCCTCCTGTCGGTCCCTAAAGTACCAAGGTAAATGGTTGATGTTGCGTTTGTCTAGGATGATATA
TGTTGGCTCTGTTCCGGTTCATCCGAGCAGTTTGGTGACTAATTTATTGATAATTTAATTATATTAATTAAATGAGTCGG
GTGTATCATCGTGCATTTATCTTGCCAGTAATGTTCTGTGATGCTCTGATGCACTTTGGGAATTAGTTATCTTGTCTTCA
GTGCAGAACATTTGTTTATTAATGCATGAGAAGAATCCTTGTTACTACCTTGAACCTGTTTTAGAATCCATATTGTTATG
CACTAGCGCGTGTGCGTGTGAAATAGATGGATTATGGTCCCGCACCCAATAAGATGGATATGTGTGTGTGTTAGAGAGAG
AGAGAGGGAGAGGGGGAGAGAGAGTGAGGAGGAGGGAGGGAGAGAGTGTGTGTGTGAGAATTTGATGGTAAAAAGGTCGT
CAATGTCACTTGATATGTATGAGAATATTAAATTTAATATTAACATAATTGATATTGAACTCTTAAAATTAATGTGGCCC
CGTTGCAACGCACGGGTGTTCTTCTAGTTATACCTAACCA-----AGGGGTGTCCAGGTTTATCGACGGACGGACCTCTT
GTATA--------------------TATATATATATACACACACATACGCAGGCGAGACGAGACGAGTCGACCAGCCAGG
TGCAGAATCGATGTCGGTTCAGATCAATGCCT------------------TGCAGTCCGATCGCATCAGGACGATGTATG
TTGTCGGTTCAGACTTCCGACTCGAATTTGAATCAATCCCCCGCTGCCCGTGTCGAATCCTGCGCCTCTTTGGGGTGGAC
TCGGACACAGAAAAACCTCTCAAGTGATCAAGTCCTCCTATATATAGATGTAAAGCCGCAGACCCT-----AGCTTGCCC
TTGAGATCTGCGAGCGTTCAT----CATGACAGTACCCATGGCAGAAGAACCGGGCAACTACGGCGACTACTACGTCCTC
ACCATTGAACCTGAACC------AGATCAGCCTGCC---GCCGCCGCCGC------------------CGGCGAAGATCA
GGCGGCCCTTTGGCTTTACACGCTGGCGATGTTGGTCTTGCTGGCGATTTCTCTAGGCTTGGCCTTCTACATCTGCCACC
TGACCCGA------------GTTCTGGAGCCTGGGTACTCGGTACAGTTCACAGGCGTCCAGGGACTCGACCCCTCGCAG
AACCCTGTCCCCTCGCCGGCCTTCAACCTCACCGTCCACGTTAGCAACAAGCAGCACGTGCGACGAGTCTGCCAGGAGGA
GAACACCGTGATCGTCTACTACGACGAGGGCG---GTAACTCCACAACCAGAAGCATCGGATGGGGCAAGATGCCTGCCT
TCTGCGTGGATAGGTGGTCGACGACGGACCTCGACGTGTCCTTGTCTAATCAGGGCCTGTTCCTCTCTCAGAGGTTGCGG
GAGAAGATGGAGGCCGACCGGCAAAGCCAACAAATTGACATAAGCGTCGAGATCAAGCCAACTCATCC---GGAGAAGTC
CTCTAGGCCATGCCTCAACTTGTGTGGGGGCGAGTTGATCGGCCAGTCCTTCCCATCCGCGTCAGCGATGCCGTGCAGCA
CACTATGCGCGACAGAAAGGAAGTATATT------TACTATAGGGATCATCAACGGCGCCCTCCCAGTCACCAAAGCTAT
TC------------------------------------------------------------------------------
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>chr3B_931
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----------------------------------CTCCTATATATA--CGTAGCGCCGCAGACCCT-----AGCTTGTCC
TTGAGATCTGCGAGCGTTTGTTTACCATGACAATGCTCATGGCAGAAGAACCAGGCAACTACGGAGACTACTACGTCCTC
GCCATTGACCCCGAACC------AGATCAGCCTGCG---GATGACGCCGAGTGCAACGACAACGACAACGACGACGATCC
GATGATCCTTCTGCTGGGCGTGCTGGGGCTGTGCCTTTTGCTCGTGATTTGTGCAGCCCTGTCCTTCTTC----------
--ACCCGA------------GGCCTGGAGGCCGGGTACTCGGTCCAGTTGACAGGCGTCCAAGGCCTCGACCCCTCGCAG
AACCCTGCCGTCGCGCCGGCCTTCAACCTCACCGTCCACGTCAACAACAAGCAGCACATGCGGCGAGTCTGCAAGGAGGA
GAGCAACGTGGTCGTCTACTACAACGCAGCCAGCGACGGATTTAAGGAGACAAGCATCGGATGGGGCAAGCTGCCCGCCT
TCTGCGTGGAGCGGTGGTCGGCGAGGGATCTCGACGTGTCCTTGTCTAACCAGGGCGTGTTCATCTCTCAGAGGCTGCGG
GAGAAGATGGAGGCTGATAGGCAAAGCCAACAAGTGGACATGAGTGTTGAGATCAAGCCAGCCCATCC---AGAGGAGAC
CCCTAGGCCATGCCTCACATTGTGCAAGGGTCAGT---TCGGCTAGACCCTCGCCGCAGCCCCAGCGATGCCGTGCCACC
CGCTATGTGCGA--------------------------------------------------------------------
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>chr3D_966
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-----------------------------------------------------------------------AGCTTGCCC
TTGAGATCTGCGAGCGTTCAT----CATGACAGTACCCATGGCAGAAGAATCGGGCAACTACGGCGACTACTACGTCCTC
ACCATTGAACCTGAACC------AGATCAGCCTGCC---GATGCCGCCGC---------------------CGACGATCA
GACGACCTTTTGGCTGGGCACGCTGGCGATGTTGGTCTTGCTGGCGGTTTCTGTAGGCTTGGCCATCTAC----------
--ATGTGGCGCCTCACTTATGTTCTGGAGCCTGGATACTCGGTACGGTTTACTGGCGTCCAAGGGCTCGACCCCTCGCAG
AACCCTGCCATCTCGCCGGCCTTCAACCTCACCGTCCACGTTAACAACAAGCAGCACATGCGACGAGTCTATCAGGAGGA
GAACACCGTGATCGTCTACTACGACGAAGGCAGTAGTAACTCCACGACGAGAAGCATCGGATGGGGCAAGATGCCTGCCT
TCTGCGTGGATAGGTGGTCGACGACGGACCTTGACGTGTCCCTGTCTAATCAGGGCTTGTTCCTCTCTCAGAGGTCGCGG
GAGAAGATGGAGGCCGACCTGAAAAGCGCACAAATTCATATCAGCGTTGAGATTAAGCCAGCCCATCC---AGAGGAGTC
CTCTAAGCCATGCCTCACCTTGTGTGGTGGCAAGGCCATCGGCCAGTCCTTCCCAGC-----------------------
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>chr3B_1003
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----------------------------GACAGTATCCATGGCAGAAGAACCGGGCAACTACGGCGACTACTATGTCCTC
ACCATTGAACCTGAACC------AGATCAGCCTCCC---GATGCCGCCGC---------------------CGACGATCA
GACGACCTTTTGGCTGGGCACGCTGGCGATGCTGGTCTTGCTGGCGGTTTCTGTAGGCTTGGCCATCTAC----------
--ATGTGGCACCTCACTCATGTTCTGGAGCCTGGGTACTCGGTACGGTTCACAGGCGTCCAAGGGCTCGACCCCTCGCAG
AACCCTGCCGTCTCGCCGGCCTTCAACCTCACCGTCCACGTTAACAACAAGCAGCACATGCGACGAGTCTGCCAGGAGGA
GAACACCGTGATCGTCTACTACGACGAAGGCAGTAGTAACTCCACGACGAGAAGCATCGGATGGGGCAAGATGCCTGCCT
TCTGCGTGGATAGGTGGTCGACGACGGACCTCGACGTGTCCCTGTCTAATCAGGGCTTGTTCCTCTCTCAGGAGTTGCGG
GAGAAGATGGACGCCGACCTGAAAAGCGCACAAATTCATATCAGCGTTGAGATCAAGCCAGCCCATCC---AGAGGAGTC
CTCTAGGCCATGCCTCACCTTGTGTGGCGGCAAG----------------------------------------------
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>chr3B_1146
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--------------------TGCTGGGGCTGTGCTTTTGCCTCGTGATTTGTGCAGGCATGTCCTTCCTC----------
--ACTTGA------------GGCCTCGAGGCCGGGTACACAGTCCAGTTAACAGGCGTC--AGGGCTCGACCCCG-GCAG
AACCCTGCCGTCTCGCCGGCCTTCAACCTCACCGTCCACGTTAACAAGCAGCACCACATGCGACGAGTCTGCCAGGAGGA
GAGCCACCTGGTCGTGTACTACGACGAAGCGGCCGGAGCCGTTAACTCCACGAGCATCGGCCAGGGCAAGATACCTGCCT
TCTGAGTGGATAGGTGGTCGACGACGGAGCTCGACGTGTCTTTGTCTAATCAGGGCGTGCTTGTCTCTTTGAGGTTGCGG
GAGAAGATGGAGGCCAACCGGCAAAGCCAAGGAATGGACATGGGCGTTGAGACCTGGCCAATCCATCTAGAGGAGAAGTC
TTCTCGGCCATGCGTCCCCA-GTGTGGTGGCAAGT---TCGGTCAGTACCTCGTAGCAGGGCCTGCGATGCGGTTCTACA
CACTATG-------------------------------------------------------------------------
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>chr3D_1198
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----CCGA------------GTTCTGGAGCCTGGGTACTCGGTACAGTTCACAGGCGTCCAAGGACTCGACCCCTCGCAG
AACCCTGCCCCCTCGCCGGCCTTCAACCTCACTGTCCACGTTAACAACAAGCAGCACATGCGACGAGTCTGCCAGGAGGA
GAACACCGTGATCGTCTACTATGACGAAGGCAGTAGTAACTCCACGACGAGAAGCATCGGATGGGGCAAGATGCCTGCCT
TCTGCGTGGATAGGTGGTCGACGACGGACCTCGACGTGTCTTTGTCTAATCAGGGCCTGTTCCTCTCTCAGAGGTTGCGG
GAGAAGATGGAGGCCGATCGGCAAAGCCAACAAATTGATATAAGCGTCGAGATCAAGCCAACTCATCC---AGAGAAGTC
CTCTACGCCATGCCTCAAATTGTGTGGGGGCAAGACGATCGGCCAGTCCTTCCCATCCGCGTCAGCGATGCCATGCAGCA
CACTATGCGCGACAGAAAGGAAGTATATT------TACTATAGGGATCATCAACGGCGCCCTCCGAGTCACCAAAGCTAT
TC------------------------------------------------------------------------------
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>SNPs
--------------------S---------------------------S-------------------------------
-------------------------------------------------------S------------------------
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----------------------------------------------------------------------S---------
-----------------------------------------------------S--------------SS-S--S-----
--------------------------------------------------SSSSSSSSSSSSSSSSSSSSS---------
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-----------------------------------S--------------------------------------------
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---------------------------------------SSSSSS-----------------------------------
S-------------------------------------------------------------------------------
---------------------------------------------S----------------------------------
-------------------------------------S------------------------------------------
----------------------------------------------------S---------------SSS---------
--------------------------------------------------S--------------------S--S-----
-----------------SSSSSS----------------------------S----------------------------
---------------------------S----------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------S---S--------------------------
-------------S-S----------------------------------------------------------------
-------S-----S------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
-------------------------------------S----------------S-------------------------
----S---------S------------------------------------------------S----------------
---------------------S--------SSSSSSSSSSSSSSSSSS--------------------------------
------------------S------SS------------------------SSSSSSSSSS----S--------------
-------SSSSS-SS-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------
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------------------S------------S-------------S---------------S------------------
-----------------------SSSSSSSSSSSSSSSSSS-------------------------------------S-
------SS--S--SS-----------------S---------S-----------------------S------S--S---
----------S-------------------------------S-------------S------------S------SSSS
SSSSS-SSSSS---------------------------S-------S-S----------S---------------S---S
----------------------------------S--------S--------S---------------S----------S
--------S-------S---------------S--------S--S---S-----S----------SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_390
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--------------------------------------------------CCAGACATCAGCCTCCCATC----------
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>reverse_5472
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-------------------------------ATTATGCGCCTGGCCAATCT-----------------------------
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-------------------------------------
