>input_sequence_71989
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-ATGCCGGACTCCGACAACGACTCCGGCGGGCCGAGCAACGCGGACTTCTCGTCGCCCAAGGAGCAGGACAGGTTCCTGC
CGATCGCCAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCCAACGCCAAGATCTCCAAGGACGCCAAGGAGACGGTG
CAGGAGTGCGTGTCCGAGTTCATCTCCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACCAT
CAACGGCGACGACCTGCTGTGGGCCATGACCACGCTCGGCTTCGAGGACTACATGGAGCCGCTCAAGCTCTACCTGCACA
AGTTCCGCGAGCTCGAGGGCGAGAAGGCCGTCGGCGCCGGCGGCGTTGGCGCGTTACCCTCCCCCGGCGGCTCCAGCTCG
CAGCAGAGGGAGTCGACGCCAAGGAACAATGGCGGAGGCGGTGAGGCCGGCGGCTACGGCGGCATGTACGGTGGCGCCGG
GGCAGG---AGGCAGCGGCGGCGGCATGTTCATGATGATGGGGCAGCCCATGTACGGGTCCCCGCCGGCGGCAGGGTACC
AACATCCGCAGCATCACCACCAGATGATGACGGGAGGGCAAGGCGGGTACGGCTACGGCGACGCCGGCGCCGGCGGCGGG
TCTTCGTCGTCCTCAGGGTTCGGCAGGCAAGACAGGGCATGA--------------------------------------
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>chr2D_1_TraesCS2D01G180700
CACTATTTTTTCAGTGATATGATGCATCCGTCGACTGCGACATGGCCTATGGTGACTTCGTCAATCTCAACGCATGTGAG
CTCGATCTCTCAAAGGTATTCACAATTCTTCTTTTGCTTGTGGTGCGGTAAATACCTCAAGAGACCTAAAATTAACAAAA
ACAAAGCAAATGATTGGACGAAATGAAATATGTGT----------------GGTCTCTTGTCAACGTTTTTTTAAGGACC
TCTCATCAACGTCGTACCAAATGTTTGAGTCGGAGAACATGAGATCGTTGTATCATCAATAGGCCCATTTCTCATGATCT
CAT----AGATATTTGCTGATAGAACTTGAGCGTACGCTATGCCACTTGATTGCATTATGGAGGATCTTGTCATTAACTT
TGATTGGGATGCCGCTAAAAAGGCGAGTAGGTGCATGCCCAAATAATGGAGGCAAGTGACAGCAAGATTCTTACGCCGAC
CAACGGAGTTAAAAATAAAAATAGGCCCGGGAGGTGGCCACGTCAGACCCAGCTGCTCCACGTAAGCACCCCGCGTGGCA
GACCTCCGCCACGGCTGCATGGACCACCCGCGCCGATCGATGCACCGAATTCCCCCGGATGCTGCCAGCGTGGCACCT--
----------GCGGGCGCCGGCCCAGCAATACTTATCAACAAACAAACGGCCCACGTCCCGCCACGTCACCCCGTCGATG
CGTTCTTATCCCCACGATCCGTCCGACGGGCCCTGCCATTCTCCACCCCCCCTCGTCAAAGTCTCAAACCCCCTCGCCTC
CCACCTCACTCGCCACTAGCGGAGGCCTCCCCCCTCCTCCCGCCGGTTCCTACAAATTCTCGCCGCCCCGCCGGTTCCAC
CTGCGATTGACGCGCTTCCACTCCTGTTCTTGGAGCCGCTGATTCGGAGCCTTCCGGGTCTGGTTGGTGCTGGGTTT---
------TTTGATCGGCTTTTGAGTTGACCGGAGAAGGGAGGAGCTGCTGCTCTGTTTCTTGGCTAACTTCGGTGGGCGGC
GATGCCGGACTCCGACAACGACTCCGGCGGGCCGAGCAACGCGGACTTCTCGTCGCCCAAGGAGCAGGACAGGTTCCTGC
CGATCGCCAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCCAACGCCAAGATCTCCAAGGACGCCAAGGAGACGGTG
CAGGAGTGCGTGTCCGAGTTCATCTCCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACCAT
CAACGGCGACGACCTGCTGTGGGCCATGACCACGCTCGGCTTCGAGGACTACATGGAGCCGCTCAAGCTCTACCTGCACA
AGTTCCGCGAGCTCGAGGGCGAGAAGGCCGTCGGCGCCGGCGGCGTTGGCGCGTTACCCTCCCCCGGCGGCTCCAGCTCG
CAGCAGAGGGAGTCGACGCCAAGGAACAATGGCGGAGGCGGTGAGGCCGGCGGCTACGGCGGCATGTACGGTGGCGCCGG
GGCAGG---AGGCAGCGGCGGCGGCATGTTCATGATGATGGGGCAGCCCATGTACGGGTCCCCGCCGGCGGCAGGGTACC
AACATCCGCAGCATCACCACCAGATGATGACGGGAGGGCAAGGCGGGTACGGCTACGGCGACGCCGGCGCCGGCGGCGGG
TCTTCGTCGTCCTCAGGGTTCGGCAGGCAAGACAGGGCATGACCGTCCCAGCTTGCACGAGCTTGTTCGTTGGCGTATCT
GTTTTACTGGTAACCGGAGTTGCCAACGGCCAGCCGCCAGGCCAGTTAATCTCTACAGTA-----CCTTTTTTGTGTTCT
AAATGCGGTTTAAGTCGGTCAATTTTATTCCAAATTAGCAGCACCAGCGCGACTAGTTGCATTTAGCCCGCTACTGT-AA
ATGGGCTACTGACAAGGTGCATTTACATACAAAAATTAATGGCAAGTGCATTTTGACAGTGTA---CTGACGAGCGAGCA
TGTTCTGTGGTCACCTGAATGTG----CATACTCTGGCTGGGTCTGGTTGTGGTACTGCCTGATTGGTACTTTTCCGTGG
AGATAATTTGGAATATCGGGTGTCGGTCGTGTGATCTCAGGTGTCGGCATGGGTAATCCTTTGATGAGGAAACTTATTCC
GACTACCGAGTCTTCTGAGTGCTAGTGTACTGCTAAGATATCAGAGTGGTTAGTACGTACTTCCTCTGTTCCTAAATATA
AGTCTTTATAGAGATTCTACTATGAACCACATACGGATGTATATAGATGCATTTTAGAGTCTAGATTCACTCATTTTGCT
CCGTATGCAGTTCATAGTGAAATCTCTACAAAGACTTATACTCCTCCGTCCCAAAATAAGTGTCTCAAGCTTAGTACTCC
TTCCGTTCGGAATTATTTGTCTCGAAAATGGATGTATCTAGAACTAAAATATGTCTAGATACATTCATTTCTGCGACAAG
TATGTCTAGATACATCCATTTTCGAGACAAGTAATTCCGAGTGGAGGGAGTATAATTTTGTATTAAAGTTAGTACAAAGT
TGAGATACTTATTTTGGACAGAGGGAGTAGTGGGGAACGGACGGAGTACGTATTAGGAAATGAAACAGTGAAGGAAACTG
AAGAAACAGCAACATTCTTCAGTTAAGTGATCGAAACACAGGACTAAATCTGAATCCTTCGTTTCCGAGGCCTCCAACCT
CCAAGGTTGACACGT
>chr2A_1
CAGTATTCTTTCAGTGATATGATGTATTTGTCGACTGCGACATGGTTTGCGACGACTTCGTTAATCTCAATATACGTGAG
CTCGATCTCTCAAAGGTATTCACAATTCTTCTTTCGTTTGTGGTGCGGTAAATACCTCGAGAGGCCTAAAATTAATAAAA
ACAAAGCAAATGATTGGACGAAATGAAATATGTGC----------------GGTCTCTTGTCAACGTTTTTTCAAGGACC
TCTCATCAACGTCGTACCAAATGTTTGAGTCGGAGAGCATGAGATCGTTGTATCATCAATAGGCCCATTTCTCATGATCT
CAT----AGATATTTGCTGATAGAACTTGAGCGTACGCTATGCCACTTGATTGCATTATGGAGGATCTTGTCATTAACTT
TGATTGGGATGCCGCTCAAAAGGCGAGTAGGTGCATGCCCAAATAATGGAGGCAAGTGACAGCAAGATTCTTACGCCGAC
CAA------------------------CGGGAGGTGGCCACGTCAGACCCAGCTGCTCCACGTAGGCACCCGACGTGGCA
GACCTCCGCCCC-GCTGCATGGACCACCCGCGCCGATCGATGCACCGAATTCCCCCGGATGCCGCCAGCGTGGCACCTGC
GGACGGCATCGCGGGCGCCGGCCCAGCAATACTTATCGACAAACAAACGGCCCACGTCTCGCCACGTCACCCCCTCGATG
CGTTCTTATCCCCACGATCCGTCCGACGGGCCCTGCCACTCTCCACTCCCCCTCGTCAAAGTCTCAAACCCCCTCGCCTC
CCACCTCACTCGCCACTAGCGGAGGCCAACCCCCTCCTCCCGCCGGTTCCTACAAATTCTCGCCGCCCCGCCGGTTCCAC
CTGCGATTGACGCGCTTCCACTCCTGTTCTTGGAGCCGCTGATTCGGAGCT-----------------------------
GGGTCGTTTGATCGGCTTTAGAGTTGACCGGAGAAGGGAGGAGT---TGCTCTGTTTCTTGGCTAATTTCGGCGGGCGGC
GATGCCGGACTCCGACAACGACTCCGGCGGGCCGAGCAACGCGGACTTCTCGTCGCCCAAGGAGCAGGACAGGTTCCTGC
CGATCGCGAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCCAACGCCAAGATCTCGAAGGACGCCAAGGAGACGGTG
CAGGAGTGCGTGTCCGAGTTCATCTCCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACCAT
CAACGGCGACGACCTGCTGTGGGCCATGACCACGCTCGGCTTCGAGGACTACATGGAGCCGCTCAAGCTCTACCTGCACA
AGTTCCGCGAGCTGGAGGGCGAGAAGGCCGTCGGCGCCGGCGGCGTTGGCGCGTTACCCTCCCCCGGCGGCTCCGGCTCG
CAGCAGAGGGAGTCGACGCCAAGGAACAATGGCGGAGGCGGTGAGGCCGGCGGCTACGGCGGCATGTACGGCGGCCCCGG
GGCAGGGGGAGGCGGCGGCGGCGGCATGTTCATGATGATGGGGCAGCCCATGTACGGGTCCCCGCCGGCGGCAGGGTACC
AACATCCGCAGCATCACCACCAGATGATGACGGGAGGGCAAGGCGGGTATGGCTACGGCGACGCCGGCGCCGGCGGCGGG
TCTTCGTCGTCCTCACCGTTCGGCAAGCAAGACAGGGCATGACCTACCCTGCTTGCACGAGCTTGTTCGTTGGCGTGTCT
GTTTTACTGGTAACCGGAGTTGCCAACGGCCAGCCGCCAGGCCAGTTAATCTCCACAGTACTACTCCTTTTTTGTGTTCT
GAATGTGGTTTAAGTCAGTCGATTTTATTCCAAATTAGCAGCACCAGCGCGACTAGTTGCATCTAGCCCGCTACTGTAAA
ATGGGCTACTGACAAGGTGCATTTACATACAAAAATTAATGGCAAGTGCATTTTGACAGTGTAGTACTGACGATCGAGCA
TGTTCTGTGGTCACACGAATGCGCATACATACTCTGGCTGGGC-----AGTGGTACTGCCTGATTGGTACTTTTCCGTGG
AGATAATTTGGAATATCGG--------------------GGTGTCGGCATGGATAATCCTTGGATGAGGAGACTTATTCC
GAATACCGGGTCTTCTGAGCGCTAGTGTACTGCTAAGATGTCAGAGTGGTTA----------------------------
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>chr2B_91
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----------CAAAAGTATTCATAAGCTTTCTTTTGCCTATGGTGTGGTAAATACCTCGAGAGGCCTAAAATTAACAAAA
ACAAAGCAAACGATTGGGTGAAATGAAATACTCCTATTAAAATGTTATATAGGTGTCTTGTCAATGCTGTTTTAAGGACC
TCTCATCAACGTCGTACCAAATGTTTGAGTCGGAGAACATGAGATCTTTGTATCATCAATAGGCCCATTTCTCACCATCT
CATCATCAGATATTTGCTGACAGAACTTGAACGT----TATGCCACTTGGTTGCATTATGGAGGATCTTGTCATTAACTT
TGATTGGGATGCCGCTCAAAAGGCGAGTAGGTGCATGCCCAAATAATGGAGGCAAGTGACAGCAAGATTCTTACGCCGAC
CAACGGAGTTAAAAATAAAAATAGGCCCGGGAGGTGGCCACGTCAGACCCAGCTGCTCCACGTAGGCACCCGACGTGGCA
GACCTCCGCCACGGCTGCATGGACCACCCGCGCCGATCGATGCACCGAATTCCCCCGCATGCTGCCGGCGTGGCACCGAC
GGACGGCATCGCGGGCGCCGGCCCAGCAATACTTATCGACAAACAAACGGCGCACGTCTCGCCACGTCACCCCCTCGATG
CGTTCTTATCCCCACGATCCGTCCGACGGGCCCTGCCATTCTCCACTCCCCCTCGTCAAAGTCTCAAACCCCCTCGCCTC
CCACCTCACTCGCCACTAGC----GCCTCCCCCCTCCTCCCGCCGGTCCCTACAAATTCTCGCCGCCCCGCCGGTTCCAC
CTGCGATTGACGCGCTTCCACTCCCGTTCTTGGAGCCGCTGATTCGGAGCCTTCCGGGTCTGGTTGGCGCTGGGTTGTTC
GGGTCGTTTGATCGGGTTTAGAGTTGACCGGAGAAGGGAGGAGT---TGCTCTGTTTCTTGGC----TTCGGCGGGCGGC
GATGCCGGACTCCGACAACGACTCCGGCGGGCCGAGCAACGCGGACTTCTCGTCGCCCAAGGAGCAGGACAGGTTCCTGC
CGATCGCCAACGTGAGCCGGATCATGAAGAAGGCGCTGCCGGCCAACGCCAAGATCTCCAAGGACGCCAAGGAGACGGTG
CAGGAGTGCGTGTCCGAGTTCATCTCCTTCATCACCGGCGAGGCCTCCGACAAGTGCCAGCGCGAGAAGCGCAAGACCAT
CAACGGCGACGACCTGCTCTGGGCCATGACCACGCTCGGCTTCGAGGACTACATGGAGCCGCTCAAGCTCTACCTCCACA
AGTTCCGCGAGCTCGAGGGCGAGAAGGCCGTCGGCGCCGGCGGCGTTGGCGCGTTACCCTCCCCCGGCGGCTCAGGCTCG
CAGCAGAGGGAGTCGACGCCAAGGAACAATGGCGGAGGCGGTGAGGCCGGCGGCTACGGCGGCATGTACGGTGGCGCCGG
GGCAGGAGGAGG---CGGCGGCGGCATGTTCATGATGATGGGGCAGCCCATGTACGGGTCCCCGCCGGCGGCAGGGTACC
AACATCCGCAGCATCACCACCAGATGATGACGGGCGGGCAAGGCGGGTACGGCTACGGCGACGCCGGCGCCGGCGGCGGG
TCTTCGTCGTCCTCAGGGTTCGGCAGGCAAGACAGGGCATGACTGTCCCTCCTTGCACGAGCTTGTTCGTTGGCGTATCT
GTTTTACTGGTAACTGGAGTTA-----GGCCAGCCGCCAGGCCAATTAATCTCTACAGTAC-----CTTTTTTGTGTTCT
AAATGTGGTTTAAATCGGTCAATTTTATTCCAAATTAGCACCACCAGTGCGACTAGTTGCATTTAGCTCGCTACTGT-AA
ATGGGCTACTGACAAGGTGCATTTACATACAAAAATTAATGGCAAGTGCATTTTGACAGTGTA---CTGACGAGC----A
TGTTCTGTGGTCACCTGAATGTG----CATACTCTGGTTGGGT-----TGTGGTACTGCCTGATTGGTACTTTTCCGTGG
AGATAATTTGGAATATCGGGTGTCGGTTGTGTGATCTCAGGTGTCGGCATGGATAATCCTTTGATGAGGAAATTTATTGC
AAATACCAAGTCTTTTGAGTGCTGGTGTACTGCTAAGATATTAGGGTGGTTAGT--------------------------
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>SNPs
--S----S----------------S--SS----------------SS-SS-SS--------S--------SSS-S-----
----------------------------------------------------------S----S----------------
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----------------S---------------------------------------------------------------
----------------------------------------------------------------S------SS-------
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-------------------------------------S--------------------S--------------S------
----------------------------------------------S---------------------------------
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-------------------------------------------------------------------S--------S---
-------------------S-----------------------SSSS-------------------S-----S-------
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--------------------------------------------------------------------------S-----
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-------------S------------------------------------------------------------------
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-------------------------------------------------S------------------------------
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-----S--------------------------------------------------------------------------
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-------------------------------------------SSSSS--------------------------------
---------------------------S------------------------S---------------------------
--S---------------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_62
------------------------------------------TGGCCTATGGTGACTTCGTC------------------
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>reverse_2044
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-------------------------------------------CTGGTTGTGGTACTGCCTGA-----------------
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