>input_sequence_71988
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-------------------------------------------ATGGACGGCATTGCTCCTGCCTCCGCCCCCGCCCCCG
CCCCCGCTCCGGCTGGCCCCCCGTGGCAGCACGTCGGCAGGAGCCTCTCCGGCGCCGGCGCGACGGGCCTGACGGCCGCC
GGCACGGTGCTCCTCTTCCTCTACCTCGCGGGGCGCTTCGTCTGGGTGTACAACAAGGAGGTGGCCGCCGCGAACGCGCC
CAGCGCACGGGTCGACGCGGCCACCCCGGTCCGCGTCGTCGTCGTGGTCCCGCGGCCCCTCCGCGGCGCTGCGCCGCCGG
TGTCGCAGCTCCCGGCGTTCGTGCGCGGCGAGGAGGGCCACCGGGGCGCGCCGGAGGAGTGCGCGGTGTGCCTCTCGGAG
TTCGGGGAGCGGGAGGCCGGGCGGCGGCTGCCGGGGTGCGGCCACGGGTTCCACGAGGCGTGCATCGCGGCGTGGCTCCG
GCTCAGCTCGACGTGTCCCCTCTGCCGCGCCGCCGTGGCCTCGCCCGGGTGAGTACAGACAAGGCGAGGAGGGGCGACGG
CCGTGGTCCGCGTGGTCGATAACGTACGTGTGCATGTAGAAGAATTGTAGATGTAGGTAGACGTCG-TCGAAGCCAGCTC
GGGCGTTTGTCTCTGCTC---GGCATATTCGCATATCCGGCCGCAGCGCTTTGCTCTGTCCTACTCACCCAAGGCACATA
TATTT---------------------------------------------------------------------------
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>chr2D_1_TraesCS2D01G109100
CAACATTCATTCCTATCATCCAAAGCTCCTATATTTATCCACCCAAATGCCACCTACTTACCCTCCACTGCAAGCAAACC
CTCTCCGGGTGCTCGCTCGACGCTTGGTGACCACACAAGTTGGAGAACATCATGGAAGTGTGCTCAAACTTCACTAGAAT
CAAGGACATGCACAAGGAGGCAGACACTATGGTAAAGAAGGCGACGATGAAGGAGTTGAAGACGCTGATTCCTGGCCGAG
TGAAAGGCCCTATGTCACCGGACATACTGCGCTAGGCCATGGATCAGGCCAAGTCCGACGATGCTGGTCAGAGAGCAAGA
TGGGCCAAGTAGGTGAAAATCGTTAGCAAGGAGGTGAAAATAGGACTTACCGCCATTGCCGAAGTGCCGATGATAAACGT
CAGTGCTCGCCTTGTTGTTCTCCGATCCGCCGATCACCACCGCAGGTGTGAAAGTGGGAGAGGAGAGAGAGCAATGAGGG
AAGGTGAGGTTAATTTATGTCGCGGCATCGGAAAACAACGCGACGCCTCGAGGCCGCCTTCACGCGTGCAACCGCCACAC
CCACGTGCCTCGAGTTGCACCCCTCGGGCCTGACTGTGAAAGAACGGTCCATTCGGCGTTCCCTCAGAGCCGGGACCAAT
GGTGCTTTAAACTTCGTGTGGGCCAGCTTTTGGATGCGACTCAACCACCAAAACAGATCAATTTCTTTGTGCGCGAGCCG
TCAGTTGAGCTTAATGCGAGCAACCGAACGCGTCAGAACGCGATCTTTCCATTCCCTTGGATCACTTAGGACTTCCGAAT
CAGAAAGAATGCTGCACGGCCCAAACGTGATTGCCACGCGCTGTCACCAAACCTATCCGAAAGGAACACGACGGCACAAC
GTAAACGCAAACGATGTCTTGTACCGCCGGTAGACGAGACAGAGCAGTGCAC--TTCATGCCCATTTAAAACCCGGACCC
AACTGGCCACCT-ATACGATCTCGCTCTGCCGTGTCGCCGGGCATGGACGGCATTGCTCCTGCCTCCGCCCCCGCCCCCG
CCCCCGCTCCGGCTGGCCCCCCGTGGCAGCACGTCGGCAGGAGCCTCTCCGGCGCCGGCGCGACGGGCCTGACGGCCGCC
GGCACGGTGCTCCTCTTCCTCTACCTCGCGGGGCGCTTCGTCTGGGTGTACAACAAGGAGGTGGCCGCCGCGAACGCGCC
CAGCGCACGGGTCGACGCGGCCACCCCGGTCCGCGTCGTCGTCGTGGTCCCGCGGCCCCTCCGCGGCGCTGCGCCGCCGG
TGTCGCAGCTCCCGGCGTTCGTGCGCGGCGAGGAGGGCCACCGGGGCGCGCCGGAGGAGTGCGCGGTGTGCCTCTCGGAG
TTCGGGGAGCGGGAGGCCGGGCGGCGGCTGCCGGGGTGCGGCCACGGGTTCCACGAGGCGTGCATCGCGGCGTGGCTCCG
GCTCAGCTCGACGTGTCCCCTCTGCCGCGCCGCCGTGGCCTCGCCCGGGTGAGTACAGACAAGGCGAGGAGGGGCGACGG
CCGTGGTCCGCGTGGTCGATAACGTACGTGTGCATGTAGAAGAATTGTAGATGTAGGTAGACGTCG-TCGAAGCCAGCTC
GGGCGTTTGTCTCTGCTC---GGCATATTCGCATATCCGGCCGCAGCGCTTTGCTCTGTCCTACTCACCCAAGGCACATA
TATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNG---------------
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-----------------------------------------------------------------------------TAT
GGTTAGTTTGTGTTCCATTGTACTCACTACGATTGCAATGCTTTTTTTTTTGGACAAAGGGTATCATTAACATTAAGAGC
AATGTGCATGAGTAATTTTACAATCGTTCATCTGCAGATTACCTAGCTTTAAAAGCGTTGGACATAGATCCTCTGAATGG
AGACTATTGCTACAAGTCATACCTGGATGCAGACTTGTGAGAGCAAGATCTGCTGTAGACAAAGTTCATGTTGATGTGAT
AAACCTGAACTTGAAAGTTGTTGGTGACTTGAAAGAATTTAGCCAGATCGGGCTCGGCTAAGACGACAGGGGCCAAGTGC
AAGGTGAACTAGGAAATGGTGTGTCATTCACTCATTCTCGTTGATACTGCGGCATCGGGGTGCTCAACATTGAAAAATTT
GCATGTGCCTTGCGGTTAAGATGGCTGTGGTATGATTTGGAGGAGCCAAACAAACTATGGATGGGGCTTGGTAAAAACCC
ATGCACTGAGGACGACCTTAATTTCTTCTATGCCTCCCCCACGATCACTGCGGGGAATGGCACC-AAACGCCAATTTGGG
ACTCACCTTGGTTGCTTGGGCGCAAACCTAAGGACATTGCCCCACTAATATTTGATGCCTCGAGGAGAAAGAACTGAAAA
GTGCATGAGGCCCTAAAAGAGAATGCTTGGTTTCTAAAGTGCATGAGCCTATGCCAAC
>chr2A_764
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-------------------------------------------TCTTTCCGCTTCCTTGGATCATGTGGGACTTCCGAAT
CAGGCAGAATGCTGCACGGCCAAAACGTGATTGCCCCGCGCTGTCACCAAACCTATCCGAA-GGAACATGACGGCACAAC
GTAAACGCAAACGATGTCTTGG-----------------------AGTGCAC--TTCATGCCCATTTAAAACCCGGACCC
ATCTGGCCACCTCGTACGATCTCGCTCTGCCATGTCACCGGACATGGACGGCATTGCTCCAGCCTCCGCCCCCGCCCCCG
C------TCCGGCCGGCCCGTCGTGGCAGCAAGTCGGCGTGACCCTCTCCGGCGCCGGCACGACGGGCCTGACGGCCGCC
GGCACGGTGCTCCTCTTCCTCTACCTCGCGGGGCGCTTCGTCTGGGTGTACAACAAGGAGGTGGTCGCCGCGAACGCGCC
CGGCGCACGGGTCGACTCGGCCACCCCGGTCCGCGTCGTCGTT---GTCCCCCGGCCCCTCCACCGCGCAGCACCGCCGG
TGTCACAGCTCCCGGCGTTCGTGCGCGGCGAGGAGGGCCATCGGGGCGCGCCGGAGGAGTGCGCGGTGTGCCTCTCGGAG
TTCGGGGAGCGGGAGGCCGGGCGGCTGCTGCCGGGGTGCGGCCACGGGTTCCACGAGGCGTGCATCGCGGCGTGGCTCCG
GCTCAGCTCGACGTGTCCCCTCTGCCGCGCCGCCGTGGCCTCGCCCGAGTGAGTACAACCAAGGCGAGGAGGAGCGACGG
CCGTGGTCCGCATGGTCGATAACGTGCGTGTGCATGTAGAAGAATTGTAGACGTAGATAGACGTCGTTCGAAGCCAGCTC
GGGCGTTTGTCTCTGTTCTGGGGCATATTCGCATATCCGGCCGCAGCGCTTTGCTCTGTCCTGCTCACCCAAGGCACATA
TATTT---------------------------------------------------------------------------
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>chr2B_765
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--------------------------------------------CTTTCCGCTTCCTTGGATCATCTGGGATTTCTGAAT
CAGAAAGAATGCTGCACGGCCAA------ATTGCCGCGCGCTGTCACCAAACCTATCCGAGA-GAACACGACGGCACAAC
GTAAACGCGAACGATATCTTGTACCGCCGATAGACGAGACAGGGCAGTGCACTTTTCATGCCAATTTAAAACCCGGACCC
ATCTGGTCACCTCATACGATCTCGCTCTGCCGTGTCGCCGGACATGAACGGCATTGCTCCTGCCTCCGCCCCCGCCCCCG
C------TCCGGCCGCCCCCTCGTGGCACCACGTCGGCAGGACCCTCTCCGGCGCCGGCGCTACGGGCCTGACTGCCGCC
GGCACGGTGCTCCTACTCCTCTACCTCGCGGGCCGCTTCGTCTGGGTGTACAACAAGGAGGTGGCCGCCGCGAACGCGCC
CGGCGCACGGGTCGACTCGGCCGCCCCGGTCCGCGTCGTCGT---GGTCCCGCGGCCCCTCCGCAGCGCCGCGCCGCCGG
TGTCGCAGCTCCCGGCGTTCGTGCGCGGCGGGGAGGGCCACCGGGGCGCGCCGGAGGAGTGCGCGGTGTGCCTCTCGGAG
TTCGCGGAGCGGGAGGCCGGGCGGCGGCTGCCGGGGTGCGGCCACGGGTTCCACGAGGCGTGCATCGCGGCGTGGCTCCG
GCTCAACTCGACGTGTCCCCTCTGCCGCGCCGCCGTGGCGTCGCCCGGGTGAATGCAAACAAGGCGAGGAGGGGCGACGG
CCGTGGTCCGCATGGTGCGCAACGTACGTGTGCATGTAGAATTGGAGTAGATGTAGATAGACGTCGTTCGAAGCCAGCTC
GGGCGTTTGTCTCCGTTCTGGGGCATATTCGCATATCCGGCCGCAGCGCTTG-----------------CAAGGCACATA
TATTTCTCTTGCGTGACATGTGTATAGTTGATCCATTAGTTGGTACTCCTTTCTTTTTTTTTTGCGGGAAAAACTTTCAA
TCTATTCATCTTCAATCATGGTAGTACAACGAATACTAGAAATAATAAAAATTACGTTCAGATCCGTAGACCACCTAGCG
ACGACTACAAGCACTGAAGCGAGCCGAAGGCGCGTCGCTGTCATCGCCCCTCCCTCGCCGGAGCCGGGCAAACCTTGTTG
TAGTAGACAGTCGGGAAGTTGTCGTGCTAAGGCCCCGTAGAACCAACGCACCAGAACAGCAACCGCCGCGGATGAAGAGT
GTAGATCAAAAGGATCCAACCTGAAAACACACGAACGAAGACGAACGACGAACAGATCCGAGCAAATCCACCAAAGGCAG
ATCCGCCGGAGACACAACTCCACACGCCCACCAACGATGCAAGACGCATCACCGGAACGGGGGCTAGGCGGGGAGACCTT
TATTCCATCTTCAGGGAGCCGCCACCGTCTCGCCTTCCTGAGCAAGACACAAATACTAACAAAGCTCGAAAAAAGATCTA
AAAACGGAGGCCTCCCACCGGCAAGGGCCGAGATCCACTCCGCCTCCATGGCCGTAGAGCCACCGGAGACGGGATGGACC
GGCACCGGCGCCGGTGGGAGGCACAGCACAGCACAGATATGACATGTACATTTGGTCGTTTTAGAAAAATGCAAGCATAT
GGTTAGTTTGTGTCTCATTGCACACACCACGATTGCAATGCTATTCTTTTTGGACAAAGGGTATCATTAACATTGAGAGC
AATGCGCATGAGTAATTTTACAATCGTTCATCTGTAGATTACCTAGCTTTAAAAGCACTGGACTTAGATCCTCTTGAATG
GAG----------------TATCTGGATGCAGACTTGTGAGAGCAAGATCCTCTGTAGACAAAGTTCATGTTGATATGAT
AAACCTGAACTTGAAAATCGTTGGTGACTTGGAAGAATGTAGCTAGATCGGGCTCGGATAAGATGACCGGGGCTAAGTGC
AAGGTGAACTGGCAAATAGTGTGTCATCCTTGTGA--------ATACGGCGGTCTCGGGATGCTCAACACTGAAAAATTT
GCACATGCCTTGCGGTTAAGATAGCCATGATATGAGTGGAAGGAGCCAAACAAGCTATGGGTGGGGCTTGGTAA---CCC
ATGCACCGCGGATTACCTTAATTTCTTCTATGCCTCCACCATGATCACTGTGGGGAATGGCGCCAAAACGCCATTTTGGG
ACTCACCTTGGTTGGTTGGGTGCAAACCTAAGGACATTGCCGCGCTAATATTTGATGCCTCGAGGAGAACGAATTGAAAA
GTGTGCGAGGCCCTAAAAGGGAATGCTTGGATTCTAAAG-------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------SS-S----------SS-S------------
---------------------S-------------S--------------------------------------------
-----------------------------S------------S-------------------------------------
-S---------------------------------------S--------------------------------------
-SSSSSS------S------S---------------------S-------------------------------------
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-S--------------S-------------------------SSS-------------------S----S----------
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---------------------------------------------------------S----------------------
-----------S--------------------------------------------S-----------------------
---------------S----------------------------------------------S-----------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
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-------------SS-----S--S---S--------------S--S----------------------------S-----
----S-----------------------------S---------------------SS-----S----------SS-SS-
SSSSSSSSSSSSSSSSSSS--S----------------------------SS-----------------------S----
----------------S-S------------S------S----S-------------S-----S---S-----S------
----------S-S----S---------S-SSSSSSSSSSSSSS----S----SS-----S---------S----------
---SS-----------------S--SS--S-----S-S-S-------------S------S-------------SSS---
------S-S---SS-----------------------S---S--------S----------S-----------S------
--------------S-----S--------------------S-S-------------------------S---S------
---SSS-------------S----------S--------SSSSSSSSSSSSSSSSSSS
>forward_413
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-------------------------------------------------------------------------TAAACGT
CAGTGCTCGCCTT-------------------------------------------------------------------
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>reverse_2698
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---------------------------------------------------------CTAAGACGACAGGGGCCAAG---
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