>input_sequence_71965
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--------------------------------------------ATGGCCGGTCGTGGGAAGGCAATCGGCACCGGCGCG
GCCAAGAAGGCGACGTCCCGGAGCTCCAAGGCTGGGCTGCAGTTCCCCGTGGGAAGGATCGCCAGGTTCCTCAAGGCCGG
CAAGTACGCCGAGCGCGTCGGAGCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTTGAGTACCTCGCCGCTGAGGTGCGTT
TCTCGCGGATCTCATCCTTGCCCCTGTTCTCGCGGTATTCTATTCCTTGATCCGGTTCCGTCGTGGGTTCCGACAAATCG
GGCTATTCTTAGATCTGTTTAGAACCGTGCCGTCTGTTAATAGCAATGCGTCGAAACCGAAGTTATTTTCGCGTACAAAT
TCGTCAAGATAAGGTTTCTCGGGTGCAGAATCGATGTGCTTTCCTTTGTATTCATTGCATTGGTTGCTGCTTGTTCTAAT
CTGGTCGTCCTTCCCCAT--ATCTAGGTCCTGGAGCTGGCCGGAAACGCCGCCAGGGACAACAAGAAGACCCGTATCGTG
CCGCGGCACATCCAGCTCGCCGTGCGCAATGACGAGGAGCTGACCAAGTTGCTCGGCGGCGCCACCATCGCCAGCGGCGG
TGTGATGCCCAACATCCACCAGCACCTCCTCCCCAAGAAGGCCTCTTCCTCCAAGGCGTCCACCGTCGATGACGACGACA
ACTGA---------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G214700
ACCTCGGCAATTTAAAGATGTCGAGGTTTTGAAGTTCCATTGTACATTATCTCGGAAAAAAAGGTCTTATTGTCCATTCC
GTAGCATTATGCTGGTCACAATGGGGAGGAACTTAGGAGTAACATCACACACTCCAATACAACTTTACTTATGTGTCACA
TATTTAATGAAGAGAGAGGTGCTTGTGGTAACTAGCTAAGTTACCGGAACATCACACACTCCAAAAAACAATGAGTCTAT
AACCTAATAAATACATTGTTGCATGACACTATATAGATATTCCTACCCACTGTGGAGATAGTAACATAGTCTAGGGAAGT
GTCTAAGTTACTAGACTATGCTCTTGCCCATTGTGACTAGCCTAATAAATACATTGTTGCATGACACTACATAGATATTC
CTACCCACTGTGAAAATAGTAACATAGTCTAGGGAAGTGTCTAAGTTACTAGACTATGTTCTTGCCCATTGTGATTAGCC
TTAATACACAGACATATGCATGTGGTTGCAAAAGTACATACTCCTGCTCCATAGGTCGGGAGTTACATTATTGTTTTTTT
AAGGCAAAGTTACATTATTGGTGGACCAAGCCCGCATCTTTACTGGAGAAGAAATAACACCGACAAGTGGGCCATATAGA
AAATTAAAACACGTGACCACTCCGTCGATTCCCATAGAGACCTGGACTCCCGCGGAAAGTCCAAAACGAAAACCTTCCC-
CGCCCCATATGCCCCCGCCCTCCCGCCGCTTCCGGATCCGAACCCTCGCGGCTCCGTCCCTCGCATCCACCGTCCAATCT
CGCGCATCCGACGGCCCAAACCAGCGATCCGCGTGATCGCCGCCCATTGGCTGTCGCCCCGTCCCCACCCTCCTATATAT
TCTCCCCCCGCGCTGAGCGAAACCTCCCACCTGCGTCCCTCTCGCCTCCACCGCCTCCTGTCCCCTCGCGCGTTCCGTCT
CCCAGTAGCGGCTCCCGTCGTTCCCCTC---CTCGGTTGCTGAGATGGCCGGTCGTGGGAAGGCAATCGGCACCGGCGCG
GCCAAGAAGGCGACGTCCCGGAGCTCCAAGGCTGGGCTGCAGTTCCCCGTGGGAAGGATCGCCAGGTTCCTCAAGGCCGG
CAAGTACGCCGAGCGCGTCGGAGCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTTGAGTACCTCGCCGCTGAGGTGCGTT
TCTCGCGGATCTCATCCTTGCCCCTGTTCTCGCGGTATTCTATTCCTTGATCCGGTTCCGTCGTGGGTTCCGACAAATCG
GGCTATTCTTAGATCTGTTTAGAACCGTGCCGTCTGTTAATAGCAATGCGTCGAAACCGAAGTTATTTTCGCGTACAAAT
TCGTCAAGATAAGGTTTCTCGGGTGCAGAATCGATGTGCTTTCCTTTGTATTCATTGCATTGGTTGCTGCTTGTTCTAAT
CTGGTCGTCCTTCCCCAT--ATCTAGGTCCTGGAGCTGGCCGGAAACGCCGCCAGGGACAACAAGAAGACCCGTATCGTG
CCGCGGCACATCCAGCTCGCCGTGCGCAATGACGAGGAGCTGACCAAGTTGCTCGGCGGCGCCACCATCGCCAGCGGCGG
TGTGATGCCCAACATCCACCAGCACCTCCTCCCCAAGAAGGCCTCTTCCTCCAAGGCGTCCACCGTCGATGACGACGACA
ACTGAGGCCCTGTCCTTTCCCTCGCTGCCACCGCCCGCACCATGGATTACATTTGCATCAC-AAAGACGAAGGAGTTTCT
TGTT-----TCGTAGGATTTAGTGTCTTGGTTTTCAGGAGAGTCCCGGATGGTATGGTATTAGGAGAATTTCTAGTTGGT
GGTCGGATTGGTTGCTTTCATCCCATGGCTGTGAATATGGCAAACAAATTTTCGGGTGTTCAAACTCAGATGTAAGGCTG
CTTGATCTTGTCCGGTTTCCATGGTTGAAGAAATTGAAAGGAACTCAACTTTAAGCT-ATTACCAATTTTGTCGCTCATT
GTTCTAATCGTACCTGTTATTTGATTTGCCTGAAGGATTCAC--------------------------------------
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-------------------------AGTGATAGGTTTTTAG---------------------TAGTATGTGATTACATCG
TGCTTTAGTAAATTTGGTATTTCTTGTCGTGCTCTACGAATGATGTGTAACCAAGATGCATCTCCCTTTCTGGGCGATGC
AGGCTGCAATGATTGAAGAACGTGCTGTTGAGCTAACACGAAATTGACTATTTAACTGGACTTACAAGTGCTCCACGGAT
TCCATTATGGAACGTTATATTTTCACAAACTTGATTCCAAATTAGTATCCTTGCATCCCACAACGATCGTTGCATATGCT
TGCTTGGCAGTGGAGGTAGATGCATCACGGACGAAGGGCGCGCGCATGGCATACGGCTCAGGTGTTTCCCTCGACGTGTA
TCTTACTCCACCGGTTCCATATATATAAAGAAAAGAGTCGTGCTATACACACGACATATATAAAGAAAAGAGTCGTGCTA
TACACACGACATATATAAAGAAAAGAGTCTGACATATATAAAGAAAAGAGTCGTGTTATACACACGACAAAAATCAGACG
ATTCACGCACGATGAATGAAATCTAGCCGGACAATCTAGCCGGACATACGTCTGATGGAAAGAGTACCAGCCGGCTCCAG
GCAAATTTAACAATTTTGATTTGTGGATGAAATCATTTCATAAAATAAACTGTTTC
>chr2D_1
ACCTCGGCAATTTAAAGATGTCGAGGTTTTGAGGTTTCATTGTGCATTATCTTGAAAAAAAAGGTCTTATTGTCCATTCC
GTAGCA--------------------------------------------------------------------------
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TTAATACACAGACATATGCATGTGGTTACAAAAGTACACACTCCTACTCCATAGGTCAGGAGTTACATTATTGTTTTTTT
AAGGCAAAGTTACATTATTGGTGGACCAAGCACGCATCTTTACTGGAGAAGAAATAACACCGACAAGTGGGCCATATAGA
AAATTAAAACACGTGACCACTCCGTCGATTCCCATAGAGACCTGGACTCCCGCGGAAAGTCCAAAACGAAAACCTTCCC-
CGCCCCATATGCCCCCGCCCTCCCGCCGCTTCCGGATCCGAACCCTCGCGGCTCCGGCCCTCGCATCCACCGTCCAATCT
CGCGCATCCGACGGCCCAAACCAGCGATCCGCGTGATCGCCGCCCATTGGCTGTCGCCCCGTCCCCACCCTCCTATATAT
TC-TCCCCCGCGCTGAGCGAAACCTCCCACCTGCGTCTCTCTCGCCTCCACCGCCTCCTGTCCCCTCGCGCGTTCCGCCT
CCCAGTTGCGGCTCCGGTCGTTCCCCTCCTCCTCGGTTGCTGAGATGGCCGGTCGTGGGAAGGCAATCGGCGCCGGCGCG
GCCAAGAAGGCGACGTCAAGGAGCTCCAAGGCTGGGCTGCAGTTCCCCGTGGGAAGGATCGCCAGGTTCCTCAAGGCCGG
CAAGTACGCCGAGCGCGTCGGAGCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTTGAGTACCTCGCCGCTGAGGTGCGTT
TCTCGCAGATCTCATCCTTGCCCCTGTTCTCGCGGTATTCTATTCCTTGATCCGGTTCCGTCGCGGGATCCGACAAATCG
GGCTATTCTTAGATCTGTTTAGAACCGTGCCGTATGTTAATAGCAATGCGTCGAAATCCAAGTAATTTT-TTGTCCAAAT
TCGTCAAGATAAGGTTTCTTGGGTGCGGAATCGATGTGCTTTCCTATGTATCCATTGCATTGGTTGCTGCTTGTTCTAAT
CTGGTCGTCCTTCCCCTTTGATCCAGGTCCTGGAGCTGGCCGGAAACGCCGCCAGGGACAACAAGAAGACACGTATCGTG
CCCCGCCACATCCAGCTCGCCGTGCGCAATGACGAGGAGCTGACCAAGTTGCTCGGCGGCGCCACCATCGCCAGCGGCGG
TGTGATGCCCAACATCCACCAGCACCTCCTCCCCAAGAAGGCCTCTTCCTCCAAGGCGTCCACCGTCGATGACGACGACA
ACTGAGGCCCTGACCTTTCCCTCGCTGCCACCGCCCGCACCTTGGAATACATTTGCATCAC-AAAGAC----GAGTTTCT
TGTT-----TCGTAGGATTTAGTGTCTTCGTTTTCAGGAGAGTCCTGGATGGCTTGGTATTAGGAGAATTTCTAGTTGGT
GGTCGGATTAGTTGCTTTCATCCCATGGCTGTGAATATGGCAAACAAATTTTCGGGTGTTTAAACTCAGATGTAAGGCTG
CTTGATCTTATCCGGTTTCCATGGTTGAAGAAATTGAAAGGAACTCAACTTTAAGCTTATTACCAATTTTGTCGCTCCTT
GTTCTAATTGTACCTGTTATTTGTTTTGCCTGAAGGATCCATAGGAGTATTTAATAAAAAACTATCACATTAGGGGTTAC
TGTCTCATAGAACTATCACTTTCAAAAAAGTGACCTATAACTATCATTTTTTAATTTTATGACTAAAAACTACCACTTTT
GAAAAATGATCTGTTATTTAAACACGTTTATGACATGCAAGACCCACCCATTAGGGCTGATGTGGTGGCAAAGTCAATTA
TGTTTACTTACGTTGACTGTTATTACAAGTGGAACCCACCTGTTAGCATCACTCTTCCTCTTGCTCCTTTCTCTCTTGTG
TCATTTCCTCAAACACCTTGTGCACCTGCGAGCTACCTCCATCGTCCTTCACTGCCGGTGCTCACCTCTCCTCATGCCTC
GATCCTGTCTGGAAAGGGAGAGCCTGAGCTGCCCAACCACTCCGGCGACCACCTTTCTCCCTCCCGTCACTCCGACGAGG
TCACCTCTGTCGGCGACAACCGCCACCGGCATGCACGAACCAACCTAGCTAATACTCGCCTTGGTTTGAGCTCCCACATG
AGCTCCTGGGGCGCTTCGTCGCCCGCCTCCTGCTCCTCCGTGCAGGTGCAGCCGGCCCGCACGACGGTGCCGGACGCTGC
CAAACTCGTGCGACTCGTCGAGGAGCTGGAGGAGGCTTTGCCTTGGTCCGAGCTCCCACATGAGCTCCTGGGGCTCCTCG
TCGCCCACCTCCCGTACTCCGTGCAGGTGTAGCCGGCGTGCGCGGCCACGGCGCCGGGCGCCGCCAAGCTTGCGCGCCTT
GTCGAGGAGCTGCAGGAGCGTGAGTCCCGCCTGCGCACCGAGTTGCTTGAGCACAAGATCCTCAAGGAGGCCGTCGTCGA
GGAGCTGCGTCCGATGGTGGCGCCGACGGCCTCGGAGGAAATTCCGTCAGCTTCGGCGGCCGCTTCCATAGTTCCAGCCG
CCGTGGTTGCGCCGCCGTTCCAGTCCCCAACCAACGCCAGGGAGGTGCTGCGCCGGGGCGTCGTCATGGAGGAGTTCGGA
GCTCAAGCCCGGGTGCACAGCAAGTGTTCAACGAAATGCCAAAGTGAGAGAGGAAGAGGAGGAAGAAGAAGATTGATGCT
GACAGGTGGGCCCCACTTGTAATAACAGTCAACGTAACGGTCAAAATAAACGGAGTTGACTTTGCCGCCACATCAGCTCT
GACGGGTGGGCCCCGCATGTCATAAACGTGTTTAAATCGTCTAAACTGGCTTTTTTTCAAAAGTGGTAGTTTTTAGTCAT
AAAATTAGAAATTTTTGGTAGTTATCAGTCATTTTTTTGAAAGTGGTAGTTCTGTGGGACGGTAACCTCTAATGTGGTAG
TTTTTTTGTCAAATACTCGATCCATAGTGATAGGTTCCTAGTATGTAAACGTTATAGGTTTTTAGTATGTGATTACATCG
TGGTTTAGTAAATTTGGTATTTCTTGTCGTGCTGTACGAATGA-------------TCCATCCCCCTTTCTGGGCGATGC
AGGCTGGAATGATTGAAGAACGTGCTGTTAAGCTATCACGAAACTGATTATTTAACTGGACTTCGAGTGCTTCATAA-AT
TCCATTCTGCAACGTTATATTTTCACAAATTTGATTCCAAATTAGTATCTTTGCATCCCACAACGATCGTTCAT------
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>chr2B_569
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--------GTTACATTATTGGTGGACCAAGCACCCATCTTTACTGCAGAAGAAATAACACCGACAAGTGGGCCATATAAA
AAATTAAAACACGTGACCACTCCGTCGATTCCCATAGAGACCTGGACTCCCGCGAAAAGTCCAAAACGAAAACCTTCCCC
CGCGCCATATGCCCCTGCCCTCCCGCCGCTTCCGGATCCGAACCCTCGCGGCTCCGTTC----CATCCGCCGTCCAATCT
CGCGCATCCGACGGCCTAAACCAGCGATCCGCGTGATCGCCGCCCATTGGCTGCCGCCCCGTCCCCACCTTCCTATATAT
TC-CCCCCCGCGCTGAACGAAACCTCCCACCTGCGTCTCTCTCGCCTCCACCGCCTCCTGTCCCCTCGCGCGTTCCGCCT
CCCAGTTGCGGCTCCCGTCGTTCC---CCTCCTCGGTTGCTGAGATGGCCGGTCGTGGGAAGGCAATCGGCGCCGGCGCG
GCCAAGAAGGCGACGTCCAGGAGCTCCAAGGCTGGGCTGCAGTTCCCCGTGGGAAGGATCGCAAGGTTCCTCAAGGCCGG
CAAGTACGCCGAGCGCGTCGGCGCCGGCGCCCCCGTCTACCTCGCCGCCGTCCTTGAGTACCTCGCCGCTGAGGTGCGTT
TCTCGCGGGTCTCATCCTTGCCCCAGTTCTCTCGGTATTCTATTCCTTGATCCGGTTCGGTCGTTGGTTCCGACAAATCG
GGCTATTCTTAGATCTGTTTAGAACCGTGCCGTCTGTTAATAGCAATGCGTCGAAATCGGAGTTATTTTCTTGTCCAAAT
TCGTCAAGATAAGGTTTCTAGGGTGTGGAATCGATGTGCTTTCCTATGTATCCATTGCATTGGTGGCTGCTTGTTCTAAT
CTGGTCGTCCTCCCCCTTTGACCCAGGTCTTGGAGCTGGCCGGAAACGCCGCCAGGGACAACAAGAAGACACGTATCGTG
CCCCGCCACATCCAGCTCGCCGTGCGCAATGACGAGGAGCTGACCAAGTTGCTTGGCGGCGCCACCATCGCCAGCGGCGG
TGTGATGCCCAACATCCACCAGCACCTCCTCCCCAAGAAGGCCTCTTCCTCCAAGGCGTCCACCGTCGATGACGACGACA
ACTGAGGCCCTGACCTGTTCCTCGCTGCCACCGCCTGCACCATGGATTAAATTTGCATCACAAAAGACGAAGGAGTTTCT
TGTTCGTACTCGTAGGATTTAGTGTCTTGGTTTTCAGGAGAGTCCCGGATGGCTTGGTATTAGGAAAATTTAGT-TTGGT
GGTCGGATTAGTTGCTTTCATCCCATGGCTGTGAATATGGCAAACAAATTTTCGGGTGTTTAAACTCAGATGTAAGGCTG
CTTGATCTTGTCCGGTTTCTATGGCTGAAGAAATTGAAAGGAACTCAACTTTAAGCTTACTACCAAATTTGTAGCTCCTC
CTTCTAATCGTACCGTTTATTTGTTTTGCCTGAAGGATCCAT--------------------------------------
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-------------------------GGTGATAGGTTAG------GTAAACGTTATAGGTTTTT----------TACATCG
TGCTTTAGGAAATTTGGTATTTCTTGTCGTGCTGTACGAATGATATCT-ACCAAGATCCATCCCCCTTTCTTGGCTATGC
AGGCTGGAATTATTGAAGAACGTGCTGTTAAGCAATCACGAAACTGACTATTTAACTGGACTTACAAGTGCTCCACGGAT
TCCATTATGCAACGTTATATTTTCACAAAGTTGATTTCAAATTATTATCCTTGCATCCCACAACGATCGTTGCATATGCT
TGCTT---------------------------------------------------------------------------
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>SNPs
--------------------------------S---S------S--------S-S-------------------------
------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
---------------------------S----------S------S-----------S----------------------
-------------------------------S------------------------------------------------
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--S----------------------------------S---------------------------------------S--
------S----------------------------------------------------------------S--------
------------------S-------------------------------------------------------------
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--------------------------------------------------------S-------------SS--S-----
-------------------S------S------------------S-----S----------------------------
----------------S------S----------------------------------------------S---------
--S--S--------------------------------------------------------------------------
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------------S-------------------------------------------------------------------
----------------------------------------------------SS--------------------------
---------S--------------------------------------------------S-------------------
-----------------------------------------------------------------------------S--
-----------------------S--------------S--S--------------------------------------
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------------------------------------SS------------------------------------------
---------------------------------S----------S-S-S--------S----S-----------------
------S----------------------S-----S-------S------------------------------------
---------S-------------------S--------------------------------------------------
-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_108
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--------ATGCTGGTCACAATGGGGAG----------------------------------------------------
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>reverse_1850
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---------GGTTGCTTTCATCCCATGGC---------------------------------------------------
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