>input_sequence_71932
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--------------------------------------------------ATGGCCACCGCGTCGCTCTCCGCTCTGTCC
TCGGCGGCCGCCGCCGCCGGCAAGCGCTTCGTCATCTCCTCCCCGTCGCTCTCCTTCGCCTCCCGCCGCATCGCCGCCCC
AGCCCGCCTCCGCGCCGCCGCCGTCCCGGGGGCGAGGAGATTCGCGGCTTCCGCGGCATCGGCATCCACGGTCGTGGCCA
CCATTGCGGTCGGCGACAAGCTGCCCGACGCCACGCTCTCCTACTTCGACCCGGCCGACGGCGAGCTCAAGACGGTGACT
GTCGGGGAGCTGACTGCAGGGAAGAAGGTCGTGCTCTTCGCGGTCCCGGGCGCCTTCACCCCGACCTGCTCGCAGAAGCA
CCTGCCAGGGTTCATCGAGAAGGCGGGCGAACTCCGGGCCAAGGGGGTGGACACCGTGGCGTGCGTCTCGGTGAACGACG
CCTTCGTGATGAAGGCGTGGAAGGAGAGCCTCGGCCTCGGCAAAGACGTGCAGCTGCTGTCGGACGGCAACATCGAGCTC
ACCCGCGCGCTCGGCGTGGAGATGGACCTCTCTGACAAGCCCATGGGGCTCGGCGTGCGGTCCCGCCGCTACGCGCTCCT
GGCAGACGACGGCGTCGTCAAGGTGCTCAACCTGGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCA
AGGCGCTCTGA---------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G169100
GAAGTAAAGTCGTGCTTCTCGATAAAGGAAAAAAAATCCGGAATGGTGCTTCCGGTTTCCTGTATTTTTTCTTCAATTTT
TTCGGTATTCGTTTTTGTTGTTGGTATTTCATGTTTTCTTTTTTTGGATTTCCATTTTTTCATGAATTTTTCGTTCAAAC
TTATTAACATGGTATCTAGTTTCGAAGATCTCGATGTGAGAAGTCCCACGGTAAAAACGGTTCGAGATTTGGGCGCACGA
TTTAAGAGATAAAACGATTTGGACGCACGGTTTAAGAGATAAAACGTTTTGAATAAAACACATTTATGCAAAAATGAAAC
CACTCAGGTCATGATAAGGGATCCATATGCAGTGTATCACATTGTCAGCGCGTGAGAGATCTAGGGAAAAAGAATACCTA
ATCATGAGGATCCTCCAGAATCTTTTCACATTCAAGTAATGCATCTTGATTGCAGCGGTTTCAACCTATGATTTATAAAT
AGCTTCAACACAAAAGACAAAACAATCTCTCCAACGCATAAATGGTTGTGAGTTTACGTGGTTTCGGACTTGGTACAACC
TCAAAACACCTTCCCTTTGGTTTGCACGACCAAAAAATTATTCTGAAGGTCTACAGAAAAGATTAAAAAAATATGAATCA
CTTGTCAGCGTGTGAGAAGATGAGGAGCGAGCTTTGCAAAGGTAACCCTCGACTTTTTTTTTGCGAATTGGGAATTGAGG
TAACCCTCGAGTTGTGATTTCGGAAAAGAACGCGAACCCGAGAGGGGAGAGAACCAAACAGGCCCAACCAAGTGCT----
-GGGCCGCCTGCCTAATCCAGGGCAACAGCACGACGTCCACCCATTCCGCCGACGCGTCCAACGAACCAACCAAAATCGC
GCTGCTCCCACCTATC----ACGTCGCGCCCGGCCGTTCCTTCCATCCAAAACCTAAACCCCAC-CCCCACGCTCTTCCC
AAGGCCGAACAGATAGCATTTCCTCGAACACATCGCCTCGTCCCTCCTCCATGGCCACCGCGTCGCTCTCCGCTCTGTCC
TCGGCGGCCGCCGCCGCCGGCAAGCGCTTCGTCATCTCCTCCCCGTCGCTCTCCTTCGCCTCCCGCCGCATCGCCGCCCC
AGCCCGCCTCCGCGCCGCCGCCGTCCCGGGGGCGAGGAGATTCGCGGCTTCCGCGGCATCGGCATCCACGGTCGTGGCCA
CCATTGCGGTCGGCGACAAGCTGCCCGACGCCACGCTCTCCTACTTCGACCCGGCCGACGGCGAGCTCAAGACGGTGACT
GTCGGGGAGCTGACTGCAGGGAAGAAGGTCGTGCTCTTCGCGGTCCCGGGCGCCTTCACCCCGACCTGCTCGCAGAAGCA
CCTGCCAGGGTTCATCGAGAAGGCGGGCGAACTCCGGGCCAAGGGGGTGGACACCGTGGCGTGCGTCTCGGTGAACGACG
CCTTCGTGATGAAGGCGTGGAAGGAGAGCCTCGGCCTCGGCAAAGACGTGCAGCTGCTGTCGGACGGCAACATCGAGCTC
ACCCGCGCGCTCGGCGTGGAGATGGACCTCTCTGACAAGCCCATGGGGCTCGGCGTGCGGTCCCGCCGCTACGCGCTCCT
GGCAGACGACGGCGTCGTCAAGGTGCTCAACCTGGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCA
AGGCGCTCTGAGCCGCGCCTGCTCTGCTCCTTGCCTGAGTCGTGTCTAGTGCTCCGGAGTAGTGAATAATAATCCGACGA
ACTGTTGCTCGTGTGAGTGTCCTTCGATGCGTCGACATCGTGGAGAGGATTTTGTTTTGTTTTGTTGAGAATTGCGTGCT
GTCCATGTGCTCGATGAAATGACTTGAATTTTTCAAGGCGTCGTACTTGTTCTTAGCATTGTCGGTGGTAAAGCC-----
-TTTGCTGAGATGTTTACATAGCTCGCGTACAAAATACTCCCTCCGTCCCATAATATAAATATAAGAGTGTTTTTTACAC
TATATTTAGTGTTAAAAACGCTCTTATATTGTGCTGAGATTGAAAGCAGCTAAGATAGGTACGGATGCGATGAAGGGTGT
TTCAAAGTTCTGATGAAGGGTGTTTCAAAGTTCTATAACAAGAGATGGAAATTTTGGATGCAGACCAACTGGTAGCAAAT
AGTGTATCTCTCTTTTTTGCACTGCATGAAGACACCGAGCAAAACCTATTTGGACCGTCGATCCATTTACACAGATTAGC
TAATTGTCCGTGCGTTGTGCGCATACTTATTATAGTGATTCAATACTAATTATATCAGACATATGCCTTACACACACTAT
ATTTAAGATTTTGATCACATTTAACTTGATTTGAGTATAGGTAGAGAATGCAAGGGAAGTTTTGATTTAGTTGAGGCTTT
GTTAAGTTTTAATTTGATTTGGGTATTTATAGGGGAGGAAATGAAAGTTTTGATTTAGTTGTGACATTGAGTTAATGCCG
GACGTGATTTTAGTAAAGTATCGATTATGTTTAGATTATTCCAAGTTACTCTATTTATGTTGGTTTTAATTTTGTGCAGC
ATTGATTGAGACTACAAAAAAATCAACATAAAACATAGAAGGAAGGGGGTCGTGGGGAGGAAAATCCAAGGGAGAAAGGG
AGGCGACGGAACCAACTCCCTTTAATAGTAGAGATAGCCGTTGCAAACCCTATTCTA
>chr6D_718
AGGTA---------------------------------------------------------------------------
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----CCTCGACTGGTGATTTCGGAAAAGAACGCGAACCCGAGAGGCGAGAGCACCAAACAGGCCCAACCAAGTGCTCAGC
TGGGCCGCCTGCCTAACCCAGGGCAACAGCACGACGTCCACCCATTCCGCCGACGCGTCCAACGAACCAACCAAAATCGC
GCTGCTCCCACCTATC----ACGTCGCACCCGGCCGTTCCTTCAATCCAAAACCCAAACTCCACACCCCACGCTCTTTCC
AAGGCCGAACAGATAGCATTTCCTCGAACACATCGCCTCGCCCCTTCTCCATGGCCACCGCATCGCTGTCCGCTCTGTCC
TCGGCGGCCGCCGCCGCCGGCAAGCGCTTCGTCCTCTCCTCCCCGTCGCTCTCCTTCGCCTCCCGCCGCATCGCCGCCCC
AGCCCGCCTCCGCGCCGCCGCCGTCCCGGGGGCGAGGAGATTCGCGGCTTCCGCGGCATCGGCATCCACGGTCGTGGCCA
CCATCGCGGTCGGCGACAAGCTGCCCGACGCCACGCTCTCCTACTTCGACCCGGCCGACGGCGAGCTCAAGACGGTGACG
GTCGGGGAGCTGACTGCAGGGAAGAAGGTCGTGCTCTTCGCGGTCCCGGGCGCCTTCACCCCGACCTGCTCGCAGAAGCA
CCTGCCAGGGTTCATCGAGAAGGCGGGCGAGCTCCGCGCCAAGGGGGTGGACACCGTGGCGTGCGTCTCGGTGAACGACG
CCTTCGTGATGAAGGCGTGGAAGGAGAGCCTCGGCCTCGGCGAAGACGTGCAGCTGCTGTCGGACGGCAACCTCGAGCTC
ACCCGCGCGCTCGGCGTGGAGATGGACCTCTCCGACAAGCCCATGGGGCTCGGCGTGCGGTCCCGCCGCTACGCGCTCCT
CGCCGACGACGGCGTCGTCAAGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCA
AGGCGCTCTGAGCCGCGGCTGCTCTGCTTCTCGCCTGAGTCGCGTCTAGTGCTCCGGAGTAGTGAATAATAATCCGACGA
ACTGTTGCTCGTGTGAGTTTCCTTCGATGCGTCATCATCGTGGAGAGGATTTTGTTTTGTTTTGTTGAGCATTGTGTGCT
GTCCATGTGCTCGATGAAATGACTTGAATTTTTCATGGCGTCGTACTTGTTCTTC-CATTGCCAGCGCTAAAGCCTGAGG
GTTTGCTGAGATGTTTACA-------------------------------------------------------------
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>chr6B_776
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-------------------------------------------------------AAACAGGCCCATCCAAGTGCT----
-GGGCCGCCTGCCTAATCCAGGGAAACAGCACGGCGTCCACCCGTTCCTCCTCCGCGTCCAACGAACCAACCAAAATCGC
GCTGCTGCCCCCCTATCACGACGTCGCACCCGGCCGTTCGTTCCATCCAAAACCTAAACCCCAC-CCCCACGCTCTTCCC
AAGGCCAAACAGATAGCATTTCCTCGAACACATCGCCTCGTCCCTCCTCCATGGCCACCGCGTCGATCTCCGCTCTGTCC
TCGGCGGCCGCCGCTGCCGGAAAGCGCTTCGTCCTCTCCTCCCCGTCGCTCTCCTTCGCCTCCCGCCGCATCGCCGGCCC
AGCCCGCCTCCGCGCCGCCGCCGTCCCGGGGGCGAGGAGATTCGCGGCTTCCGCGGCATCGGCATCCACTGTCGTGGCCA
CCATCGCGGTCGGCGACAAGCTGCCCGACGCCACGCTCTCCTACTTCGACCCGGCCGACGGCGAGCTCAAGACGGTGACG
GTCGGGGAGCTGACTGCAGGGAAGAAGGTCGTGCTCTTCGCGGTCCCGGGCGCCTTCACCCCGACCTGCTCGCAGAAGCA
CCTGCCAGGGTTCATCGAGAAAGCGGGCGAGCTCCGCGCCAAGGGGGTGGACACCGTGGCGTGCGTCTCGGTGAACGACG
CCTTCGTGATGAAGGCGTGGAAGGAGAGCCTCGGCCTCGGCGAAGACGTGCAGCTGCTGTCTGACGGCAACCTCGAGCTC
ACCCGCGCGCTCGGCGTGGAGATGGACCTCTCCGACAAGCCCATGGGGCTCGGCGTGCGGTCCCGCCGCTACGCGCTCCT
CGCCGACGACGGCGTCGTCAAGGTGCTCAACCTCGAGGAGGGCGGCGCCTTCACCACCAGCAGCGCCGAGGAGATGCTCA
AGGCGCTCTGAACCGCGCCTGCTCTGCTCCTTGCCTGAGTCGTGTCTAGTGCTCCGGAGTAGTGAATAATAATCCGACGA
ACTG-TGCTCGTGTGAGTGTCCTTCGATGCGTCGTCATCGTGGAGAGGATTTTGTTTTGTTTTGTTGAGCATTGCGTGCT
GTCCATGTGCTCGATGAAATGACTTGAATTTTTCATGACGTCGTACCTGTTCTTAACATTG-------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSS------S-S--------------------------------S-----S----------------------------
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---------------------------S----------------------------------------------------
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---------------------------------S----------------------------------------------
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----S--------------------------------------------------------------------------S
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------------------------------S-----S-------------------------------------------
-----------------------------------------S-----------------------------S--------
--------------------------------S-----------------------------------------------
S--S-----------------------------S----------------------------------------------
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----------------------------------S----------------------------------S----------
-----------------------------------S-------------------S-----S-S-S-S------------
-------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_588
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--------CCTTCCCTTTGGTTTGCACG----------------------------------------------------
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>reverse_2060
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-----------------------------------------------------------TACGGATGCGATGAAGGGTG-
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