>input_sequence_71886
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-------------------------------------------------------------ATGAGCAGTAATTATGACG
CTCTGCTTGATGAAATTATCCAGCATATCAGACAGCTTTGGGGTCAAGTGAATGGACAGCAGAATGGGATGGTGGAAGGT
ATTTTAAGCTTGCCCCAGGGTGCAGGCAAATTCATTATTGTGCTACTCGCTCCACAACACTGGGTGCGCAATAACACTGA
TCCAGTTAGACTATTGTTTTCCTTCCATAATCTGTATTCTGATGGTTTTCACCGAAAAGGCAAGTGGTACCTATTTAAAG
ATATCTATCTAGAGATGCAACAGCGTGGAGAAATTGCAGGAACCAATTTAAGATCACTTGGTTTTACTGGCAACTATAAC
CAACTGGGTTCTGAATTCAGTAGCATTAACTTAGGAGGTTATGCGCTCTTCCAAATTTACAAAGGCATTACTGAGTTTCC
TGGGAAAGAAATCAAACCACAGCTCAAGCTGAGTGTGGTCAGCTTTTCAGAGAGCATGCGATTTCCAATGCTTCGCAAGT
ACATACGTGACCGCATGTCCATGGGTCTGTCTTCCGCAGAGAATATTGAATGGTTGTCGCATCATTTCCAGGATTGGTCA
GTTTATTGTGAGAAGATACGTGACGGTAGAGATGCTTTTGGAGCTATTCCTGGAATAGATAACTTTGATGACCTGCTTGC
ACTTGTTAGTATGATACTATAG----------------------------------------------------------
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>chr1B_1_TraesCS1B01G117100
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAGGGTTTGGTCGATCCAAGAG---TTTTTTTTTAGTTGAGAA
AGATGGACGAGTCGGGGATCTCGAAATAGAAAGAGGAGCCATATCATATCACAACTTGGGCCCTTTTAGGCGCGCGCTCG
ACGGTCAGAGGCCTAGGCCCATTCACTGTGTGTCGTCCAACACAGTGGG------------------CATCATCGTGTTG
GACTCGTTGGGCCATTCTGGCCCATAGTAGCCCTCACGATCACCCCCCAACCAAGGACAAGACAACGAAAAACGCTGCCT
TCCCTCAACACACACACACACACGCACCGGCGCGCGGCTTGCTTCACCATCGTTCTCAGCCAGAAAAACCTCGCTCCTCC
GGCAAAACCCTAGCCGAATCTGGTACGATCTGCTGAGGTTCGACGATCGGCGGACCAGCATTGGCGGCATGGATCCTTTT
GAGGTGCCACCCCCCTCCACTCTCCCCGCCCCCCTCCTCGTTTTTCTCATGGGCCTCCGCACAAAACCCACCTTTCTTAA
TCCTGGGCCTTAATCACTTTATTTATTAATTGCGGTCCGTGCGGTTTGGAATCAGTTCATGGTCCGATTATTTCCCCCAT
CAAGTAGGGGGCGTTGGGTTAGTAGGGCTGGCTGGGATTGGATTTCTCGCAGATTTCGTGTCACGTGTGCGTTTGTTTGG
TTCCGTACGGATTTCCTACATTTATTGTTGCATTTATTATTGTTATATATATGATGATTGATTGGGACGATATACAGCAA
ACGCAAGTTGCTGGCAAACGAAATAGTACTAGATAATACTGTTTATCCTTCATATACTTTTACATGATGATGGGATCTTA
CGGCCTTAAACCATCTCATCAACATAAATTGGTATCTTCTACCGATTGATTGCATGGTTGGATCCTACGCTCATGTTATA
TAATCTTCACTTGCAGAACTCCCCGACATTCCACTTGCAGCTGGACGAGGATCCTGAGACCATGAGCAGTAATTATGACG
CTCTGCTTGATGAAATTATCCAGCATATCAGACAGCTTTGGGGTCAAGTGAATGGACAGCAGAATGGGATGGTGGAAGGT
ATTTTAAGCTTGCCCCAGGGTGCAGGCAAATTCATTATTGTGCTACTCGCTCCACAACACTGGGTGCGCAATAACACTGA
TCCAGTTAGACTATTGTTTTCCTTCCATAATCTGTATTCTGATGGTTTTCACCGAAAAGGCAAGTGGTACCTATTTAAAG
ATATCTATCTAGAGATGCAACAGCGTGGAGAAATTGCAGGAACCAATTTAAGATCACTTGGTTTTACTGGCAACTATAAC
CAACTGGGTTCTGAATTCAGTAGCATTAACTTAGGAGGTTATGCGCTCTTCCAAATTTACAAAGGCATTACTGAGTTTCC
TGGGAAAGAAATCAAACCACAGCTCAAGCTGAGTGTGGTCAGCTTTTCAGAGAGCATGCGATTTCCAATGCTTCGCAAGT
ACATACGTGACCGCATGTCCATGGGTCTGTCTTCCGCAGAGAATATTGAATGGTTGTCGCATCATTTCCAGGATTGGTCA
GTTTATTGTGAGAAGATACGTGACGGTAGAGATGCTTTTGGAGCTATTCCTGGAATAGATAACTTTGATGACCTGCTTGC
ACTTGTTAGTATGATACTATAGATGATCTTTGGTAGCTTAACAGTTGACAGATGCACAATGATACTATAGATGATCTTTG
GTGGCTTAACAGTTGACAGGTGCACAATGTAATCCTCATCAACAAAAACAAGGTCATCACTTCTCTGCAACTTAAAATAG
GTACCGCTGACTGTGAGCCCTCAAAATTTAGCCCATTGGTACTCAGTCTAAACAATAGCATGGGATGTCAAGGACTGAGC
AAGTCATACTTACCTCTGATATCTTTGGGTTCTTCTATGTCTGAAGATAGAACTTGCTACAAAGAGTTCCATATTCAGTG
GATAACAGGCAAGATGCAGAACTAAAGTGACAAAAGAGCACAAATAACAATGTTATGGCTGCACAATGTTTTATGTATGG
ATGTCAGGAACTGTGGTTTCATACAACGACATTTGTAACATTTCTACCGAAGAAAACTGACTCAACGATCATCCTGGTCT
CTATAGCATTTAGCTTAGTT--GACAACATGTCTAACTGGCTGCTGAAGTTCTTGTCACCGAGGTCTGGCAGGTTACCTC
AACTGGCCAGCTGATTGAAGTTAACTTCATATTGGCCCGATAATCTATTCATTGGTTGCAGAAGAAGCAACATACATGCC
TCCTGCTGAAATTGGCCATGCTTAAGATTCAGTTTCCATGCCCTTTTCTGTTTGAGGTGACCCAGCATATGGAGTTCAGC
AGACCTCAAGTCTATAACCAGAGGGGCTTACACAAGATAGTGATTGGCTCTCTGACTGCCATTTTCCACTAAGTGGGGAT
TAAATGCCATCAAACACCTCATATCCACGTATGCTCTGGAAACACTGTAATGATTGACTGTTTTATGGAACTAGACGTTC
TGGTACTCATGGAGAAAATCAGAGGAGAATGCAAGATAAGCTCAAGGCCATTGGACATGTTGCCTGCTGGCAGATGGCTT
CTCTAGTCCTTAGAGGCTTAGAGCATTTTTCTCGTGTGTCTTTTTGTTATTCTTGTTCAAGTTT
>chr1D_20
-------------------TCTCTCTCTCTCTCTCTCTAGGGTTTGGTCGATCCAAGAGTTTTTTTTTTTCAGTTGAGAA
AGATGGACGAGTCGGGGATCTCGAAATAGAAAGAGGAGCCATATCATATCACAACTTGGGCCCTTTTAGACGCGCGCCAG
ACGGTCAGAGGCCTAGGCCCATTCACTGTGTGTCGTCCGACACATAGTGGGCATCCATTCGGCCACTCATCATCGTGTTG
GACTCGTTGGGCCATTCTGGCCCATAGTGGCTCTCACGCTCACCCCCCAACCAAGGACAAGACAACGAAAAACGCTGCCT
TCCCTCAACACACACACG--CACGCACCGGCGCGCGGCTTGCTTCACCATCGTTCTCAGCCAGAAAAACCTCGCTCCTCC
GGCAAAACCCTAGCCGAATCTGGTACGATCTGCTGAGGTTCGACGATCGGCGGGCCAGCATTGGCGGCATGGATCCTTTT
CAGGTGCCGA--CCCCCCTCTCTCCCCGCGCCCC-------TTTTCTCATGGGCCTCGGCACAAAACCCACTTTTCTTAA
TCCTGGGCCTTAATCACTTTATT----AATTGCGGTCCGTGGGGTGTGGAATCAGTTCATGGTCCGATTATTTCCCCCAT
CAAGTAGGGGGCGTTCGGTTAGTACGGCTGGCTGGGATTGGATTTCTCGCAGATTTCGTGTCACGTGTGCGTTTGTTTGG
TTCCGTACGGATTTCCTACATTTATTGTTGCATTTATTGTTAT----------ATGATTGATTGGGACGATATACAGCAA
ACACAAGTTGCTGGCAAACGAAATAGTACTAGATAATACTGTTCATCCTGCATATACTTTTACATGATGATGGGATCTTA
CGGCCTTTGACCATCTCATCAACACAAATTGGTATCTTCTACCGATTGATTGCATGGTTGGATCCTATGCTGATGTTATA
TAATCTTTACTTGCAGAACTCTCCGACATTCCAATTGCAGCTGGACGAGGATCCTGAGACTATGAGCACTAATTACGACG
CTCTGCTCGATGAAATTACCCAGCACATCAGACAGCTTTGGGGTGAATGTG-----------------------------
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>chr1D_1069
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-------------------------------------------------GAATGGACAGCAGAATGGAATGGTAGAAGGT
ATTTTAAGCTTACCCCAGGGTGCAGGCAAATTCATTATTGCAATACTCGCTCCACAACACTGGGTGCGCAATAACAGTGA
TCCAGTTAGGCTATTGTTTTCCTTCCATAATCTGTATTGTGATGGTTTTCACCAAAAGGGCAAGTGGTACCTGTTTAAAG
ATATCTATCTAAAAATGCAAAAGGGTGGAGAAATTGCAGGAACCAATGTAAGATCACTTGGTTTTACTGGCAATTATAGC
CAACTGGGTCCTGCCTTCAGTAGCATTAGTTTAGGAGGTTATGCACTCTTCCAACTTTACAGATGCATTGCTGAGTTTCC
TGGGTTAGAAATCAAACCACACCTCAAGCTGGGCGTGGTCAGCTTTTCAGAGGCCATTCGATTTCCACTGGTTCGACAGT
ACATACGTAA-CGCATGTCCATGGGTCTGTCTCACGCAGAGGATGTTCAATGGTTATCGAATCATTTCCAGGATTGGTCA
GTTTACTGTGAGAAGATACGTGACGGTAGAGATGCTTTTGAAGCTATTCCTGGAATAGATACCTTTGACGACCTGCTTGC
ACTTGTCATTATGATACTATAGATGATCTTTGGTAGCTTAACAGTTGACAGATGCACAATGATACTATAGATGATCTTTG
GTATCTTAACAGTTGACAGATGCACAATGTAATCCTCATCAACAAAAAGAAGGTCATCACTCCTCTGCAACTTAAAATAG
GTACCGCTGACTGTGAGCCCTCAAAATTTAGCCCATTGGTACTCAGTCTAAACAATAGCATGGGATGTCAAGGACTGAGC
AAGTCATACTTACCTCTGTTATCTTTGGGTTCTTCTATGTCTGAAGATAGAACTTGCTGCAAAGAGTTTCATATTCAGTG
GATAACCGGCAAGATGCAGAACTAAAGTGACAAAAGAGAACAAATAACAATGTTATGGCTGCCAAATGTTTTATGTATGG
ATGTCAGGAACTGTGGTTTCATACAACGACATTCGTAACGTTTCTACTGAAGAAAACTGACTCAACGACCATCCTGGTCT
CTATAGCATTTAGCTTAATTGAGACAACATGTCTAACTGGTTGCTGAAGTTCTTGTCACCGAGGTCTGGCAGGTTACCTC
AACTGGCCAGCTGATTGAAGTTAACTTCATATTGGCCCGATAATCTCTTTATTGGTTGCAGAAGAAGCAACATACATGCC
TCCTGCTGAAATTGGCCATGCTTAAGATTCAGTTTCCATGCCCTTTTCTCTTTGAGGTGACCCAGCATATGGAGTTCAGC
AGACCTCAAGTCTATAACCAGAAGGGCTTACACAAGATAGTGATTGGTTCTCTGACTGCCATTTTCCACTAAGTGGGGAT
TAAATGCCATCAACCACCTCAAATCCACGTATGCTCTGGAAACACTGTAATGATTGACTGTTTTATGGAACTAGACGTTC
TGGTACTGATGGAGAAAATCAGAGGATAATGCAAGATAAGCTCAAGGCCATTGGACATGTTGCCTGCTGGCAGATGGCTT
CTCT--------------TAGAGCATTTTTCTCGTGTGTCTTTTTGTTATTCTTGTTCAAGTTT
>SNPs
SSSSSSSSSSSSSSSSSSS---------------------------------------------------S---------
---------------------------------------------------------------------S-------SS-
--------------------------------------S-----SS-S--------------------------------
----------------------------S--S------S-----------------------------------------
-----------------SSS------------------------------------------------------------
-----------------------------------------------------S--------------------------
S-------SSSS---S--S----------S----SSSSSSS----------------S-------------S--------
-----------------------SSSS--------------S---S----------------------------------
---------------S--------S-------------------------------------------------------
--------------------------------------S--S-SSSSSSSSSS---------------------------
--S----------------------------------------S-----S------------------------------
-------SS---------------S------------------------------------------S---S--------
-------S-------------S-----------S--------------------------S-------S------S----
-------S----------S------S------------------S--SS------------------S-----S------
-----------S----------------------------SSS---------------------------------S---
---------S----------------------------S--------------S---S--------------S-------
-----------S-S------S--S-----------------------S-------------------------S----S-
---------S---SS-------------SS--------------S---------S------S-S-----S----------
----SS---------------S---------S-S------------------SS---S---------S--S----SS---
--------S-S---------------------SS-------S--S--S-------S---S--------------------
-----S----------------------------------S--------------------S------S-----------
------S-S-----------------------------------------------------------------------
--SS---------------S----------------------------S------------S------------------
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------------------S---------------------------------------S---------S-----------
------S-------------------------------S-----------------------SS----------------
---------------------------------S-----S-------S--------------------S-----------
-----------------S----------------------S---------------------------------------
----------------------------------------------S--S------------------------------
-------------------------------------------------S------------------------------
----------------------S------------------------S--------------------------------
-------------S-------S----------------------------------------------------------
-------S------------------S-----------------------------------------------------
----SSSSSSSSSSSSSS----------------------------------------------
>forward_492
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------------------------------------------------------------------------ATCCTTTT
GAGGTGCCACCC--------------------------------------------------------------------
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>reverse_1301
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--------------------CAGCGTGGAGAAATTGCAGG----------------------------------------
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>forward_1197
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---------------------------------------------------------CACTGGGTGCGCAATAACAC---
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>reverse_2201
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----------------------------------------CTGCTGAAGTTCTTGTCACCG-------------------
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