>input_sequence_71867
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--------------------------------------------------ATGGAAGCCATTGCGGCCTCGGCGAAGCCC
ACCCTCCGCGTGGCCGCTCTCAGCGGCTCCCTCCGCAACAACTCGTGGCACCACGGCCTCATCCGTGCCGGTACGTACGC
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------TACATTTTACATGGATTTATACTT
TGC-----------------------------------------------------------------------------
---------------------ATGCAC--------------------------------------------TGCTGTGCT
GACTGCACCTTGCATGC-------GTAGCCGAGGAGCTGTGCGAGGAGTGCATGCCTGGGCTGCGCATCGACCACGTCGA
CATCTCCGGCCTGCCCATGGCCAACCCGGACCTGGAGACCGACGGCGGCAACGGCTTCCCGCAGGCCGTCGAGGCCTTCC
GCGACAGGATCAGCGCCGCCGACTGCTTCCTCTTTGCCTCGCCCGAGTACAACTACTCCGTCACCGGCTCGCTCAAGAAC
GCGCTGGACTGGGCGTCCAGAGGCACGCACAAGTGCTGGGCGGACAAGGCGGCGGCGATCGTCTGCGCGGGGGGCGACTT
CGGCGGGGGCAGGGCGTCGCTCCACCTGCGCGAGATCGGGATATACCTGGACCTGCACTTCATCAACAAGCCGGAGCTCC
ACATCAGGGCGTACGAGGACCCGCCCAAGTTCGACGGCGAGGGGAACCTCATCGACGCCCAAGCCAGGGAGCGGCTCAAG
AAGGTGCTCCTCTCGCTGCAGGCCTTCACGCTCAGGCTGCAACGCACGGAGAATTGA-----------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>chr3B_1_TraesCS3B01G551600
TTTGCCGTTCTTGACCTACATTAGTTTTGCAACAAGTTGCACCTCAGTTAGGTAGTCACTAAAAAATTCCGTGATAGACA
CCAGATTCTAAAAAAATTGTTAACGGATTTCTTTTCATAAGTCCTCCTATTTGACGATAGCCAAGATTTCACACAAGTTG
GAGCGTAGTGGGCGGCCATCTCTGGCAATGTCTGGTCCAATGAATGGTTTTCTATCTTTGTTTTTTGAGACGGGTTTCCA
GTGTTTTTGTACGTAGTTAAATATTTAAAATTATATTTATAATAATTAAAAATATATAAAAATGGCCACCTTGTGTTTAG
AAAAATAGTTTGTGCGGGTATATATTCATCACACACACACACACACACACACACACACACAAACATATTACATATATTAA
AAAATGTTTACCATATATTGAAAAAATATTTATTGTATAAAGAAAATAAAAAAAATGGCGCAAAAGGAGAAAATCGGAAT
AGATACCAAGAGATATACAAACGAGAAGACCTTTATTATCTGCACAAGGCCGGCCTTATGAGACCCGCAACATGATATCC
AGCGACGGCGAGGCGAGTGACGCCATCGATGAGGTCTGAATACTA-------CGGCTGCTGGCCGTCTCGCTCAAAGTGC
AGCGGTTGTTGGCCGTATACTCACGTGCAGTGCTTACACATGCATCCATGAGTAATATTGTTCCTACATTAGGCAACTAT
ATAAGAAACATGATGCCATCGATGACGATCTCATACCTTTCCACTACTGACCGGTACAGGTCAAGAATTCACTCTCTTTG
TCCAACCAGACACAGTGGACACGTCAACGAATCCGACGTTCGCGATGAACTGGCTGAGATCGA-TTCTGCTCGTCTATTT
AAGGCAGCCGTCTCCTCCTCCAATGGACCGCATTCACCTGATCTAGCTCAACACCGGGCCAGTAAACCCAAGCAGCCACT
CACTCTCCGGTTATCACTGACACAGCAACCAAGCTCGATACGA--GGAAAATGGAAGCCATTGCGGCCTCGGCGAAGCCC
ACCCTCCGCGTGGCCGCTCTCAGCGGCTCCCTCCGCAACAACTCGTGGCACCACGGCCTCATCCGTGCCGGTACGTACGC
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------TACATTTTACATGGATTTATACTT
TGC-----------------------------------------------------------------------------
---------------------ATGCAC--------------------------------------------TGCTGTGCT
GACTGCACCTTGCATGC-------GTAGCCGAGGAGCTGTGCGAGGAGTGCATGCCTGGGCTGCGCATCGACCACGTCGA
CATCTCCGGCCTGCCCATGGCCAACCCGGACCTGGAGACCGACGGCGGCAACGGCTTCCCGCAGGCCGTCGAGGCCTTCC
GCGACAGGATCAGCGCCGCCGACTGCTTCCTCTTTGCCTCGCCCGAGTACAACTACTCCGTCACCGGCTCGCTCAAGAAC
GCGCTGGACTGGGCGTCCAGAGGCACGCACAAGTGCTGGGCGGACAAGGCGGCGGCGATCGTCTGCGCGGGGGGCGACTT
CGGCGGGGGCAGGGCGTCGCTCCACCTGCGCGAGATCGGGATATACCTGGACCTGCACTTCATCAACAAGCCGGAGCTCC
ACATCAGGGCGTACGAGGACCCGCCCAAGTTCGACGGCGAGGGGAACCTCATCGACGCCCAAGCCAGGGAGCGGCTCAAG
AAGGTGCTCCTCTCGCTGCAGGCCTTCACGCTCAGGCTGCAACGCACGGAGAATTGACTCAAGATCGAATAAATTTGGCA
CCAAAGCATCCTAAATAATCTGCATTTCAGCTCAGATGTTCACTTTTAGTTTGGGCTATGGCCCTGGTTTCGTTAGTCTG
AGCAATTTTACTTCGTATTCGTGTAATTGTATTTTGTACTTCCATGAAATAAAAAGAAGATGCTGCTACTGTAAGCAGCC
TGCT----------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------TATTAACTCTCCGGAGAGTTGCTCTCGTGT------------
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---------------GTGTTGGACTTTTTTTTTTCCCCAGTACATTAGCTATTTAGCTTCATAAATCAAGCACTTCTCTG
ATTATTCGACTAATGCGAATGTGCCATGATTTGGATCTATGCGCTAATCGATCATAATCCCACCATCATTTTTGTTATTA
ATTTTTTGTGCCTGTCATACTGGGACAGTGGGAACAACAGAGTTTTCTTTTAGAGAAACACTATTATTATGGGGCTATAC
ACGCGGTAGAAAAATTAGGTCAATCGGTTGAGAGATATGGTATGCAACAAGTGAATGTTTCAAACAAGAAATGAATTCAA
ATTTTCGTATAACGCCCTTCTAATCCAGTCTATCTAATGTCTTTTTCAGGAGCTAAAGGAAATGCATCTGCTCGAATTAT
TTTTTTCTTAGAGGAAAGGCATGTGCTCAACTTTATAAATAAAGCCACCACGCGGAGTACAACACGAAAACCACAAACAC
ATAAACCCAAACAAGACATCATCACAGGCCAACAACAAAGGCACGCATGCCTGATAAGTTTACGGCACACAGGCCGCCGA
GAGAACAACATAGAGGCATGCAGGCCCACAACCTACCTGGATAACATAGAAAACACTCCTAGGCTTGAGCATGAGGATCT
GGAGGCCATAGCGAAACAACAGATGCCCGAACCTTCAGAATCAACGGCTCCAAAGCGTCATGATCAAAGGCCCTAGTTAA
TAATCTCCACTGCCACAAGAAGATAGTCGTTTTAAAGAGAAAAACAACAGGATTGTTAGGAAATACATGCTCAATATT
>chr3D_497
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------ACAAACGAGAAGGCCTTG---ATCTGCACAAGGCCGGCCTTAAGAGACCCGCGACTTAACATCC
AGCGACGGCGAGGCGAGTGACGCCATCGATGAGGTCTGAATACTACTAGTGCCGGCTGCTGGCTGTCTCGCTCAAAGTGC
AGCGGTCGTTGGCCATATGCTCACGTGCAGTGCTTACACATGCATCCGTGAGTAATATTGTTCCTGGATTAGGAAACTAT
A--AGAAACATGATGCCATCGATGACGATCTCATTCCTTCCCACT----ACCGGTACAGGTCAAGAATTCACTCTCTTTG
TCCAATCAGACACAGCGGTCACGTCAACGAATCCGACGTTCACGATGAACTGGCTGAGATCGA-TTCTGCTCATCTATTT
AAGGCACCCGTCTCCTCCGCCAATGGACCGCATTCACCTGATCTAGCTCGACGCC-GGCCAGTAAACCCAAGCAGCCACT
CACTCTCAGGTTATCACTGACACAGCAACCAAGCTCGGGACAAGGGGGAAATGGAAGCCGCTCCGGTCTCGGCGAAGCCC
ACCCTCCGCGTGGCCGCTCTCAGCGGCTCCCTCCGCAGCAACTCGTGGCACCACGGCCTCATCCGCGCCGGTACGTACGC
A-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------CACATTTCACGCTGATTTAATCTG
CA------------------------------------------------------------------------------
-----------------------------------------------------------------------TGCACTGCT
GACCGCGCCTTCCATGCGTGCTATGTAGCCGAGGAGCTGTGCGAGGAGTGCATCCCGGGGCTGCGCATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGCCAACCCGGACCTGGAGACCGACGGCGGCGACGGCTTCCCGCCGGCCGTGGAGGCCTTCC
GCGACAGGGTCAGCGCCGCCGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCCGTCACCGGCTCGCTGAAGAAC
GCGCTGGACTGGGCGTCCAGGGGCACGCACAAATGCTGGGCCGACAAGGCGGCGGCGATCGTCTGCGCGGGAGGCGACTT
CGGCGGGGGCAGGGCGTCGCTCCACCTGCGCGAGATCGGGATATACCTAGACCTGCACTTCATCAACAAGCCGGAGCTCC
ACATCAGGGCGTACGAGGACCCGCCCAAGTTCGACGGCGAGGGGAACCTCATCGACGCCAAAGCCAGGGAGCGGCTCAAG
AAGGTGCTCCTCTCGCTGCAGGTCTTCGCGCTCAGGCTGCAACGCAGGGAGAATTGACTCGAGATCGAATAAATTTGGCA
CCAGAGCTACCTAAATAATCTGCATTTCCGCTCAGATGATCACTTTTAGTTTGGGCTATGGCCCTGGTTTCGTTAGTCTG
AGCAATTTTACTTCGTATTCGTGTAATTGTATTTTGTACTTCCGTGAAATAAAAAGACGATGCTGCTACTGTAAGCATCC
TGCTTATTAAATGAGGTAATAACACCAGTGGTGCTTGAACTTGTCATCGATGTCCATTTTAATGACTGAACTTGAAAAAT
ACGCTGAAGTGGTTTTAAAACTTGGCATGTGCGTTCAAATATGGTGCATTTTGTCGTCTGTAGACGTAAACTATGCTGAT
GTGGCACCGTATGGCATGCCAGCATGACGAGGAGCCCATATGCAGCTGGGACAGGTTTGGGATCCACCTGTTGTGTACAA
CAGAAACATATAATTGCGTGGAAATAGTTACCTCAAGGAGGATCAAACAAGCGCCCTCGCCCAATAGCGCACACTCTGAT
AACCAATTCGCCAATAGTTAACCGTTGTCTTAGAAGGATAGCAAAGTTCTATCTAGTTTACACAAACACACTCGTGTGGT
GAAATGGGCTGAAGTTATTGCAGCCTATTATTCCATGCTATTTTTTTATAAAAATCGTGTGTCTTGAGAAACAGTGGCGA
AGCCACACTTGAGCTGGCTAGTGAATTGACTACATAGCTTTTGGCAGAACAACGTACAGAAAGTAGAAATTATGATAAAA
AATCTTATAAATGCATCCATATGACTACACAAAGCTCAGTTGACTACACATGCTAGAGTTTCTGGCACAAATATACATTC
ATATAAATTAACTTACTATTAAAAAGTTCATGTAATTTGAAAATATTCCCATAATTAAAGTAAAACATATGAATTATAAA
ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATGTATTATTAGTTTATTAGTCTTTTAGTTACATCACTATTAA
CATTACTTGAACATTTTTTGAAAGTAATTTTTATTTATGTTATTCATAGCACCTGAGTATTACAAATTAATTTATTAATG
TGACTATAATTTACATACTTTTTATAATTTCTTAAAAATAAAAAATAACCAATAAGTAGAAATGGGTTGCACTGATTGCA
GTCCATTTATACCCCGCGATGGTCTTGGGAAAATTGCTAAACGGTATAATTTCTAAAAAAAAGAACATGGTTTCATGGGC
CGCAATAACTACAGTCCATTTCACCCCACGAGAGTGTTAGGTTAAACTACATAAGCATTGACTATCTTACCAATGCAAGG
AAGTTCGTCTAGTTCATTGGTTAGCACATCGTGTGCGATTCGGCTAGGTTGCCGGTTCGATTCTCAGCGATGTTGGAAGT
ATTCTTGCAATTTTATTTTGTGTTGTACGCTGGGAGGTGGGTCCCAATGGCCATAGAGACACATACTTTCTTGAGCCAAA
CCTGCCCACCTGCAAGTGGGCCCTCCGCCATGCTGCCGTGCCATACGGTGCCACATTAGCATAGTTCACGTCTACAGCAA
ATGCACCGTATTTGAACACCTATGACATGTTTTGGAACCACTTTGGCGTATTTTTCAAGTTCAGGCACTAAAGTAAACAT
CGGTGGTAAGTTCAAGTACCATTGGCGTTATTACATCTTATTAAATCTCCGAAGAGTTGCTCTCGTGTTTCAAGATGGCA
ACGGGCCCGAAACCCGCGTCCCCGCGGGTTTTTACCTTATTAGGCAACGGGGACAGGCGTCTTTCTAACCCCGATGGGTA
CATAATAAAACCTGACATGTTTCGCGGGTTCAAACCCATTTGAGTAGTACCCGAACCCACAACTCGACATACGTCCATCT
ATGCATTCTATTTCAAAACTTATGTATTTGACCATTTCGTATCATTTGTGTTCGTGATTTGTGAACCATGAATTCTATTT
CACAACTTGTGTAATTGGACATCTTATTGAACCATGTATGGCTGGTATATGCTCCTGTTTGTTGCTGAAATATGCTAACC
TTTGTTGCTGAAATGGGTTGTTGTATTGTGTTGAAGTATGCTCCTTTTAGCTACTGTTATTGCACAAATGTTGATGAAAC
ACACTATCGTATGCTGCTGACATTTGCTCAAGTTTTGCTGCTGAAATATGCTCCTTTTTGCGGCTGAAATATACAATGTT
TGTTGTTTCAGATGCTATTCTTTGTTGCTACTATTTATCTTATGTGGTTGTTGCTGAAATATACTATGTTCGTTGCTTAA
ATATCCTGATTCTTGCTGCTGCTATTGCTGTAATATGCTCATGTTTTTCTTTCAAAAGCTGCTGTCTTCACTGTCTACTT
GTGCGGGCGGGTTCCCCGTGGGTTTCAAAACCCCAACGGGTTTAGGGGCCGGGCAAAAAACTGTCCCCGTGCATGGAGAC
GGGGACGGGGACGGGCTTGTGATTTTTTTCATGGGGACGGGTTTGGACAAGCAAAATCTGGTAGGTTTCATCCCAGTTGC
CATCTTGACTCGTGTGTGTTGGACTTTGATTATTCAA---TACATTAGCTATTTAGCTTCATAAATCAAGCACTTATCTA
ATTACTCGACTTGTGCAAATGTGCCACGATTTGGATAGGTGCGCTAATCGATCATAATCCCACCATCATTTTCGTTTTCC
ATTTTTTATGCATGTTATACTGGGACAATAGGGACAACAGAGTTTTCTTTTGGAGAAACACTATTATTATGGGGTTGTAC
ATGCAGTAGAAAAATTACGCCATTCCGTTGAG--ATATGGTATGCGACAAGTGAATACTTGAAACAAAAACTGAATTCAA
ATTCTCGAATAACGTCCTTTTAATCCAGTCTATCTAATGTCTTTTCCAGAAGCTAGAGGAAATGCATCTACTCGGATTCA
TT------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr3A_565
--------------------------------------------------------------------------------
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----ACGGCGAGGCGAGTGACGCCATCGATGAGGTCTGAATACAAAG-GTGCCGGCTGCTGGCTGTCTCCCTCAAAGTGG
AGTGGTCGTTGGCCATATGCCCACGTGCATCCATGAGTAGTATTCAA-----TAATATTGTTCCTAGATTAGGCAACTAT
A--AGAAATATGATGCCATCGATGACGATCTATGCT-TTTCCACTACTGACCGGTACATGTCACGAATTCAGACCTGATC
GAGCT-------------TCACGTCAACGAATCCGACGTTCACGATGACCTGGCTGAGATTGATTTTTGGTCATCTATTT
AAGGCAGCCGTCTCCTCCGCCAATGGACCGCACTCACCTGATCGAGCTCCACACCAGTG------ACCCAAGCAGCCACT
CACTCTCAGGTCATCACAGA------AATCAAGCTCGAAACAAGGGGAAAATGGAAGCCGTTGCGGCCTCGGCGAAGCCC
ACACTCCGCGTGGCCGCTCTCAGCGGCTCCCTCCGCAACAACTCGTGGCATCACGGCCTCATCCGCGCCGGTATGTTTGA
ACATATTCAATTGAGAAAAGTCTGAAATAAATCTTGAGTTCGTACTCTTAAGTCTGAATTGAACCCTAGCCTTGAAATCC
TGAAATTGTCACCCTATACTCGTTGATCCCGGTCTATCCCGGTTGATTTCTACAAAATACTTGTTTGGTGCACCGGGAGA
AAGGATGTCTCCGGTAGGGATTACACAATCTCACGGACTACACTAGTCCACATGTCAGATTCNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NATCTTCTCCATTTTCCTTCTTTCTATCTCACTCAAATATGAAGCTAACGTGCTAGCACAGAGCATATATCAGATCCTGA
TTGGTTCGGTTGTTTCTGTCATTATTAGCTGTTTCCTTGTATTTCTTGTATTCAGGTAAGTGAACCTCATATATATGATA
CAACTGAAGTTACTTTTTGTAGTAAATAGAAAGGTTAGGCTAGTTCAGTCCTTGCAAACAAATGCTCAGTTTAGCCATGT
CAAGCTGATACTTCCACCATAATATATAAAAAAATGAATTTGGTATAAAAAAGGGTGATACATGGGGAACTTTTTTTTTT
GGGTACGTGCTACAAGTAGCGGCACAATGCATTTTCCAGTGTGCCCCTATATTTGTTGAGACTAGTATGTTTTACTAGAT
CAGGATTGCCCTTTTTCCAGTGCACCAAAGGAACATTTAGCAGAAATCCGCCAGGATAGACCGGGATTAGAGAGTACAGA
GTGTCGGTTCCAGGGATTTGAAGGTTAGGGTTCAATTCAAACTAAGAGCATGAATTCAAGGTTTATTTTAGACTTTTCCC
TATTTAATTTTCTAGACGGTAAGTGTCACACATCATGTACGTGGCACTCCGGCCATTACATTTTTCGATGAATTGTAGTA
ACACACGGCAAGTTTCTGTCAAAAAACAAACTGAAATATGAAAATGCCATGTTTGCGAAGTAAAATTACCATC-----CT
TGCATAACTAAACTTGCCATACAAAATGTTCATAGTAGCCATGTGCTCGTACCTGATGTGTGGGGATTATGTGCAGTGCT
GACTGTGCCTTGCATGTGTGG--TGCAGCCGAGGAGCTGTGCGAGGAGTGCATTCCAGGGCTGCGCATCGACCACGTCGA
CATCTCCGGCCTGCCCATGGCCAACCCGGACCTCGAGACCGACGGTGGCGACGGTTTCCCGCCGGCCGTGGAGGCGTTCC
GCGACAGGGTCAGCGCCGCGGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCCGTCACCGGCTCGCTCAAGAAC
GCGCTGGACTGGGCATCGAGGGGCACACACAAATGCTGGGCTGACAAGGCAGCGGCGATCATCTGCGCGGGGGGCGACTT
CGGCGGGGGCAGGGCGTCGCTCCACTTGCGCGAGATCGGGATATACCTGGACCTGCACTTCATCAACAAGCCGGAGCTCC
ACATCAGGGCGTACGAGGACCCGCCCAAGTTCGACGACAAGGGGAACCTCATCGACGCCCAAGCCAAGGACCGGCTCAGG
AAGGTGCTCCTCTCGCTGCAGGCATTCGCGCTCAGGCTCCAACGCAAAGAGAATTGACTGAAGATCGAACAAATTTGGCA
CAATAGCAACCTACCTAATCTGCATTTC----------------------------------------------------
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------------------------------------------------------------------------------
>chr3D_1020
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------------------CGGCGAAGCCC
ACCCTCCGAGTGGCCGCATTCTGCGGCTCCCTCCGCAAGGACTCGTGGCACCGCGGCCTCATCCGCGCCGGTACGCACAA
TTCATCACC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------------------AATCACCATG-----GT
TGCCTAGCTCGCTTGCTAATTATGCAC--------------------------------------------CGCTGAGTT
GATCG-----------------ATGTAGCGGAGGAGCTTTGCGAGGAGTCCATCCCGGGGCTGCGCATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGAGACCGACGGCGGCAAGGGCTTCCCGCCGGCCGTGGAGGCGCTCC
GCGACAGCGTCCGCGCCGCAGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCGGTCACAGCGTCCCTGAAGAAC
GCGCTGGACTGGGCGTCGAGGGGCAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGATCGTGTGCGCGGGGGGCGACTT
CGGCGGGGCCAGGGCGTCGCTCCACCTCCGCCAGATCGGGGTGTTCCTCGACCTCCACTTCATCAACAAGCCGGAGCTCC
ACGTGAGGGCGTTTGCGGAGCCGCCCAAGTTCGACGAGGAGGGGAACCTCATCGACGCCGAGACCAGGGAGCGGCTCAGG
AAGGTGCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCTCCAGCACAACATGGAC-GACTGACTGACTCAAGATCGA----
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------------------------------------------------------------------------------
>chr3A_1020
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------CGGCGAAGCCC
ACCCTCCGCGTGGCGGCCTTCTGCGGCTCCCTCCGCAAGGACTCGTGGCACCGCGGCCTCATCCGCGCCGGTACGCACAA
TCCATCACC-----------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------AATCACCATTATATAGT
TGCTTAGCTCCCTTGGTTATTTTGCAC--------------------------------------------TGCTGAGTG
CAACTGAATTTGCATGACCT--ATCTAGCCGAGGAGCTGTGCGAGGAGTCCATCCCGGGGCTGCGCATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGCCAACCCGGACCTGGAGACCGACGGCGGCGAGGGCTTCCCGCCGGCCGTCGAGGCGCTCC
GCGACAGGGTCCGCGCCGCCGACTGCTTCCTCTTCGCCTCACCCGAGTACAACTACTCGGTCACGGCGTCCCTCAAGAAC
GCGCTGGACTGGGCGTCCAGGGGCAA---CAACTGCTGGGCGGACAGGGCGGCGGCGATCGTGTGCGCGGGGGGCGACTT
CGGCGGGGCCAGGGCGTCGCTCCACCTCCGCCAGGTCGGGATCTTCCTCGACCTCCACTTCATCAACAAGCCGGAGCTCC
ACATCAGAGCGTTCGCGGAGCCGCCCAAGTTCGACGGCGAGGGCAACCTCATCGACGCCGTGACCAGGGAGCGGCTCAAG
AAGGTGCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCT------------------------------------------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>chr3D_1170
--------------------------------------------------------------------------------
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----------------C-------GTAGCCGAGGAGCTGTGTGAGGAGTGCATCCCGGGGCTGCGGATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGTGACCGACGGCGGCGAGGGCTTCCCGCCGGCCGTCGAGGCGCTCC
GCGACAGGGTCCACGCCGCCGACTGCTTCCTGTTCGCCTCGCCCGAGTACAACTACTCGGTCACCGCCTCCCTCAAGAAC
GCGCTGGACTGGGCGTCCATGGGCGAGCACAACTGCTGGGCTGACAGGGCGGCGGCGATTGTTTGCGCGGGGGGCGACTT
CGGCGGGGGCAGGGCGTCGTTCCACCTCCGCCAGATCGGGGTCTTCCTGGACCTTCATTTCATCAACAAGCCTGAGCTCC
ACGTGAGGGCGTTCGCGGACCCGCCCAAGTTCGACGAGGAGGGCAACCTCATCGACGTCGAGACCAGGGAGCGGCTCAAG
AAAGTGCTCCTATCGCTCCAGGCCTTCGCGCTCAGGCTCCAGCCCAAGGACGACTAACTGAAGATCCATGATACTTGGCA
CC------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>chr3B_1171
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------GTAGCCGAGGAGCTGTGCGAGGAGTCCATCCCGGGGCTGCGCATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGAGACCGACGGCGGCGAGGGCTTCCCGCCGGCCGTCGAGGCGCTCC
GCGAGAGGGTCCGCGCCGCCGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCGGTCACCGCCTCCCTGAAGAAC
GCGCTGGACTGGGCGTCCAGGGGCAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGATCGTGTGCGCGGGGGGCGACTT
CGGCGGGGCCAGGGCGTCGCTCCACCTCCGCCAGATCGGGGTGTTCCTCGACCTCCACTTCATCAACAAGCCGGAGCTCC
ACATCAGGGCGTTCGCGGACCCGCCCAAGTTCGACGAGGAGGGCAACCTCATCGACGCCGTGACCAGGGAGCGGCTCAAG
AAGGTTCTCCTCTCGCTCCAGGCCTTCGCGCTCAGGCTCAAACACAAGGACGAGTGACTGACT----CAAGATC------
--------------------------------------------------------------------------------
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------------------------------------------------------------------------------
>chr3D_1171
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------------------GTAGCCGAGGAGCTGTGCGAGGAGTCCATCCCGGGGCTGCGCATCGACCACGTGGA
CATCTCCGGCCTGCCCATGGTCAACCCGGACCTGGAGACCGACGGCGGCGAGGGCTTCCCGCCGCCCGTCGAGGCGCTCC
GCGAGAGGGTCCGCGCCGCCGACTGCTTCCTCTTCGCCTCGCCCGAGTACAACTACTCGGTCACGGCGTCCCTGAAGAAC
GCGCTGGACTGGGCGTCGAGGGGCAAGCGCAACTGCTGGGCGGACAGGGCGGCGGCGATCGTGTGCGCGGGGGGCGACTT
CGGCGGGGCCAGGGCGTCGCTCCACCTCCGCCAGATCGGGGTGTTCCTCGACCTCCACTTCATCAACAAGCCGGAGCTCC
ACATCCGTGCGTTCGCGGAGCCGCCCAAGTTCGACGAGGAGGGCAACCTCATCGATGCCGTGACCAGGGAGCGGCTCAAG
AAGGTGCTCCTCTCGCTCCAGGCCCTCGCGCTCAGGCTGCAGCACAACAAGGAC-GACTGACT----CAAGATC------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSS------------S----SSSS---------------------S---------S--S-S-S----
---------------------------------------------------------------S----------------
------S-------S---S----------------------------S------------------S-------------
-SS-------------------------------S---------------------------------------------
-----S---------S--S----------------------S------------------------------S-------
------------------S------------------------------S-----S------------------------
-------S------------------------------S--S-----------------S--------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------SSS----------S
SSS-----------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--S-----------------------
--------------------------------------------------------------S-----------------
--------S-------------------------S---------------------------------------------
--------------------S-----------S-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S------------------S---------------------------------
---S----S-------------------S---------S-----------------------------------------
-------------------------------------------S-------------S-------------------S--
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------S------S----------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------SS--S---SSSSS-----------------------------------S---S
----S------SS---S---------S---------SSS---------------------------------S---S-SS
-------S---S---S-----------S-S--S------------------S----------------------S-S---
-S--S------------S-S--S--S------SS-----------S----------SS--S------S--S---------
---S---S------S----S-------------------------S---S-----S-------------S----S---SS
--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_172
--------------------------------------------------------------------------------
------------------------------------------------------------------------ACAAGTTG
GAGCGTAGTGGG--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
>reverse_5848
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------GTGCCTGTCATACTGGGACA-----------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------------------------------------------------------------------------
