>input_sequence_71854
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---------------------------------------------------------------------ATGGAGGAGAA
GGGTGCGCTGCCGCCGGCGACCAGCTCCTCCACCACTTGCAGCAGCGGCGCCTCCGGCCCCGGCTCCCCTGTCGCGACGT
CGTCTTCTGACGAGTCGAGC---G------GCGGCGTCGTTGCTGCCGCGGGCGGCAGGAAGCGGCCGCGGCGGGACCTG
AAGCACCCGACGTACCGCGGCGTGCGCATGCGGGCCTGGGGGAAGTGGGTGTCGGAGATCCGCGAGCCCCGGAAGAAGTC
GCGCATCTGGCTCGGCACCTTCGACACCGCGGAGATGGCCGCGCGCGCCCACGACGTCGCCGCGCTCGCCATCAAGGGCC
GCGCCGCCGCGCACCTCAACTTCCCGGAGACCGCGCACCAGCTGCCCCGCCCCGCCACCGCCGCGCCGGAGGACGTGCGA
GCCGCGGCCGCGCTCGCCGCGCAAATGGACCGAGCACTGGACGCGGACGCCGTCGAGGACACGGACACCAAGGTCGAGGA
GCCAGCGCCGGCACCTGCAGCCGCAGCGCACGCGTTGCCGGATGACGACATTCTTGACCTCGCGCTCTTCGACCTGCCGG
AGTTCCTGCACGAGTTCGGCTTCGCGTTGCCTCCGTCGACGTATGATGCGTACTCATGGCACGACGTCGGGGCCGACGAC
TTCCGGTTCGAGCCGGCGCCGTTGCTGCTCTGGGAGCACTAA--------------------------------------
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>chr6D_1_TraesCS6D01G232800
GGTGATGGCGGTCATCCATCAGAGCCGCATGAGGTGGAACAACCGCTAAACTCGCGGGATCTGACTCCAAATCGATGGAC
TTGGAC----GTGGGGGCCAAGGGGCGTCCATGGCGTTGTCAGCGGAGAAAATGAAGCCAATTCTAAATCAAGGGATGGG
GTCGTGCAAGATGAGAGAAATTTGGGCAACATATTGCACAACGTGGAAGAAAGAGATGGTGATGGACTCTGGTGATGAAA
GAGAGGTCGAAAACAAGCAAAAAGTTTGCAAGATTGGTGGAAGATTTGACAAAACCCTTGTGTCCCAACCCCCAATAGCA
AAGCCGGGCACACGTTGTTGTCTGTCACACTAGAACTTCTAAAGATCAAGGTGAAGCCATACTTGACTACGTCAAGTTTT
GTG----------------CCAAGAACCAGGCTCAAGCTTGGTGAGGCCCATCAGTTTTGTTCTCTCCTGTTGTTCGTTT
CTCTCCCTTGCAGAAAGGCGAGGCTGATCACTCATCAGTTGCTTGGAAGCTAGTCAATTGATCTCAGGCCCTGTACAGTA
CTACGTGCTTTCATCACCGATCCTGCAACTGCAAGGCAGTTGAGTTCACCTTACCGTATCTG----AGCATGTTAGCCGT
GATTGTATCGATTCTCACAGCCGCAGTGAGTAACACATGGCCCTCCCACAAAGCCGCGTCATCTTGCTTAACTAGCC-TT
TTTTACTACTAATATATAAACATATTCTGCATAACAATCACATTTCCTCGCCTCCTGGGGAACGCAAAAACAAGTAGAGT
ATACACGTTGCACTCCCAGTCCCTACCTTGACTCTCTTGTTAAATTAATACTAATCCGTTGCGCACCTGACACTAC-AAA
TACCAGTATATATCTCGCTCACTCTTAAGCCCTGAGGCGTAGCAAGTGACAAGCATACACCAGGCAGTCTGACTGTTTGA
GATTGCGAGCCGTGCTCACTGTGTCGAGTTCTCCCCAGA---ACCACCACCACCACCACGTACGTACCCATGGAGGAGAA
GGGTGCGCTGCCGCCGGCGACCAGCTCCTCCACCACTTGCAGCAGCGGCGCCTCCGGCCCCGGCTCCCCTGTCGCGACGT
CGTCTTCTGACGAGTCGAGC---G------GCGGCGTCGTTGCTGCCGCGGGCGGCAGGAAGCGGCCGCGGCGGGACCTG
AAGCACCCGACGTACCGCGGCGTGCGCATGCGGGCCTGGGGGAAGTGGGTGTCGGAGATCCGCGAGCCCCGGAAGAAGTC
GCGCATCTGGCTCGGCACCTTCGACACCGCGGAGATGGCCGCGCGCGCCCACGACGTCGCCGCGCTCGCCATCAAGGGCC
GCGCCGCCGCGCACCTCAACTTCCCGGAGACCGCGCACCAGCTGCCCCGCCCCGCCACCGCCGCGCCGGAGGACGTGCGA
GCCGCGGCCGCGCTCGCCGCGCAAATGGACCGAGCACTGGACGCGGACGCCGTCGAGGACACGGACACCAAGGTCGAGGA
GCCAGCGCCGGCACCTGCAGCCGCAGCGCACGCGTTGCCGGATGACGACATTCTTGACCTCGCGCTCTTCGACCTGCCGG
AGTTCCTGCACGAGTTCGGCTTCGCGTTGCCTCCGTCGACGTATGATGCGTACTCATGGCACGACGTCGGGGCCGACGAC
TTCCGGTTCGAGCCGGCGCCGTTGCTGCTCTGGGAGCACTAACGATCCGTGTCGTGTGACGAGCAGCTACGGACCGGGCC
GGCAACACGCGGCATGCATGTCAGTTCCAAGTTGGGTTTATGGTGAT---CTGCATGCGGCGTGTTACCGAGCACACTGG
TAAAATCGACTCCTGTGTGGTGTACTAACAAGGACAACTGCAATAGAATCGCAGGCTAAAGATAGTTTGTGGATTCATAT
CTTCTTAAAACTGAATAAAGCTCATCTACTTTACATCTTGATTTGTGCCACATACTCTTAAACTTGCTTCTCTGGTGTTG
GTTGTTCATATGTCTGAGTCTATTTCCCCATCCGCATTACCAGGAAAGGTATTCCTGATCGAAAATACTGGCCAACTTAT
CTTGCAGTGACACTGCATGCAGTTTTGTGTGCATTTGC--------------CTGAAACTCCGATTAGGGTTGATCGCTT
TTGGGCGAAGCACCAGGCAGAGACGGAAGTGCCGCGGCAAGTCCGAGCCAGGAGCAATCCGGAGTCAGGGCCGACACGGC
CGCGGCGTCGCCGGTGGAGGA-----------------------------------------------------------
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------GAGTCAGAGGTTGACGGGTTCGGGTGCCGGGGGTTGCTTGGAGGTCGCCGACGGCGGAGATTGTGCCGGGGTTT
AGAGGTGATCTGGCCGGGGCGTCCGCAACACGTGGAGGGGTGGCGAGGCATG--CGCGGCATCGCAGTCGACCGCCGG--
---GTGGCGACAATAGGCAGTTAGGCCGGCATC-----TCGATTGGCGACAGCATCGAGAGGTAGAAGAAGAAACTACCC
ACTTAAATCTATGAA--AACTATCCACACCGTCACCATGGGAGCCAGTCTTAGAGGTACGTGTTGAGGAACGTGATTGTA
TTAGAAAATATAGGGTAAACTAAAAAGTATTCTGGCTTGTCTTGTATTCCAAATAGATCATGTACTTCTATATATATGCC
CACGGGCTCAAGCAATAAAACGAACGATTCCATCAATTCCTCTCTCTCTTTCTAACAGTACGGGTAACAACAGCGCATCA
TGCTTGATTGGAGCGTCG
>chr6B_1
GGTGATGGTGGTCATCCATCAGAGCCGCATGAGGCGTAGCAATTGCTAAACTCTCGGGATCCGATTCCAAATCGATGGAC
TGGGACTTATGTGGGGGCCAAGGGGCA---ATGGCATTGTCTGCGGAGAAAATGAAGCCAATTCTAAATCGAGGGATGTG
GTCGTGCAAGATGAGAGAAATTTGGGCTACATATTGCATAACGTGGAAGAAAGACCTGGTGA--GACTCTGGTGATGAAA
GAGAGGTCGAAAACATACAAAAAGTTTGCAAAATTGTTGGAAGATTTGACAAAACCCTTGTGTCCAAACTCCCAATTGCA
AAGCGGGGCACACGTTGTTGTCTGTCACACTAGAACTTCTAAAGATCAAGGCGAAGCCATACTTGACCATGTCAAGTTTT
GTGGCCAGCATGCATAAATCCAAGAACCAGGCTCAAGCTTGGTGAGGCCCATCAGTTTTGTTCTCTGCT-----------
-------------------------------------GTTGTTTGGAAGCTAGTCAATTGATCTCAGTCCCTGTACAGTA
CTACGTGCTTTCATCACCGATCCTGCAACTGCAACGCAGTTGAGTTCACCTTACCGTATCTGTCTTAGCAAGTTAGCCGT
GATCATATCGATTCTCACAGCCGCAGTGAGTAACACATGGCCCTCCCACAAAGCCGCGTCATCTTGCTTAACTAGCC-TT
TTTTACTACTAATATATAGACATATTCTGCATAACAATCACATTTCCTCGCCTCCTCGGGAACGCAAAAACAAGTACTGT
ATACACGTTCCACTCACAGTCCCTGCTTTGACCCTCTCGCTAAATTAATACTAATCCGTTGCGCACCTGACACTAC-AA-
TACCAGTATATATCTCGCTCACTCTTAAGCCCTGAGGCGTAGCAAGTGACAGGCATACACCAAACAGTCTGACTGTTTGA
GATTGCGAGCCGTGACCACTGTGTCAAGTTCTCCTCAGA---ACCACCACCACCACCACGTACGTACCCATGGAGGAGAA
GGGTGCGCTGTCGCCGGCGTCCAGTTCCTCCACCACTTGCAGCAGCCTCGGCTCCGGCCCCAGCTCCCCCCTCACGACGT
CGTCTTCTGACGACTCGAGCGGCGGCGGCGGCGGCGTCGTTGCTGCCGCGGGCAGCAGGAAGCGGCCGCGGCGGGACCTG
AAGCACCCGACATACCGCGGCGTGCGCATGCGGGCCTGGGGGAAGTGGGTGTCGGAGATCCGCGAGCCCCGCAAGAAGTC
GCGCATCTGGCTCGGCACCTTCGACACCGCCGAGATGGCCGCGCGCGCCCACGACGTCGCCGCGCTCTCCATCAAGGGCC
GCGCCGCCGCGCACCTCAACTTCCCGGAGACCGCGCACCAGCTGCCCCTCCCCGCCACCGCCGCGCCCGAGGACGTGCGA
GCCGCGGCCGCGCTCGCCGCGCAAATGGACCGCGCACCAGACGCGGACGCCGTCGAGGACACATACACCAAGGTCGAGGA
GCCAGCGCCGGCACCTGCAGCGGCAGCGCATGCGGTGCCGGACGACCACATTCTTGACCTCGCGCTCTTCGACCTGCCGG
AGTTCCTGCACGAGTTCGGCTTCGCGTTGCCTCCCTCCACGTATGATGCGTACTCATGGCACGACGTCGGGGCCGAGGAC
TTCCGGTTCGAGCCGGCGCCGTTGCTGCTCTGGGAGCACTAACGATCCGTGTCGTGTGACGAGCAGCTAGGGACCGGGCC
GGCAACACGCGGCATGCATGTCAGTTCCAAGTTGGGTTTATGGTGATGATCTGCATGCGGCGTGTTACCGAGCACACTGG
TAAAATCGACTCCTGCGTGGTGTACTAACATGGGCAACTGCGATAGAATCGCAGGCTAAAGATAGTTTGTGGATTCATAT
CTTCTGAAAACTGAATAAAGCTCAGCTACTTTACATCGTTATTTGTGCCACATACTCTTAAACTTGCTTCTCTGGTGTTT
GTTGTTCATATGTG-GAGTCTATTTCCCCATCCACATTACCAGGAAAGGTATTCCTGATCGAAAATACTGGCCAACTTAT
CTTGCAGTGACACTGCATGCAGTTTTGTGTGCATTTGCTATTCATC--TTGCCTGAAATTCCGATTAGGGATGATCGCTT
TTGGGCGAAGCACAAGGCAGAGACGGAAGTGCCGCGGCAAGGCCGAGCCAGGAGCGATCCGGAGTTAGGGCAGACATGGC
AGCGGCGTTGCTGGTGGAGGA-----------------------------------------------------------
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------GAGTCGGAGGTTGATGGGTTCAGGTGCCGGGGTTTGCTTCGAAGTCGCCAACGACGGAGATTGTGCCGGGGTTT
AGAGGT---CTGGCCGGGGCGTCAGCAACACGTTGAGGGGTGGCGAGGCATG--CGCGGCATAGCAGTCGACCGCTGG--
---GTGGCGACAATAGGCAGTTAGGCCGGCGCCAGGCGTCGATTGGCGACAGCATCGGAAGGTGGAAGAAGAAACTACAC
ACTTAAATCTATGAAGAAACTTCCCACACCGTTACCATGGGAGCCACTCCTAGAGGTGCGGGT-----------------
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>chr6A_646
GTCACC--------------------------------------------------------------------------
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-----------------------------------CATGGCTCTCCCACAAAGCCGCGTCATCTTGCTTAACTAGCCTTT
TTTTACTACTAATATATAAACATATTCTGCATAACAATCACATTTCCTCGCCTCCTCGGGAACGCAAAAACAAGTACTGT
ATACACGTTGCACTCCCAGTCCCTACCTTT-CCCTCTCGATAATTTAATACTAATCCGTTGCCCACCTGACACTACAAA-
TACCAGTATATATCTCGCTCACTCTTAAGCCCTGAGGCGTAGCAAGTGACAAGCATACACCAGACAGCCTGACTGTTTGA
GATTGCGAGCCGTGACCACTGTGTCAAGTTCTCCTCAGAACCACCACCACCACCACCACGTACGTACCCATGGACGAGAA
GGGTGCGCTGTCGCCGGCGTCCAGTTCCTCCACCACCTGCAGCAGCCTCGGCTCCGACCCCGGCTCCCCAGTCGCCACGT
CGTCTTCTGACGAGTCGAGCGGCG------GCGGCGTCGTTGCTGCCGCGGGCGGCAGGAAGCGGCCGCGGCGGGACCTG
AAGCACCCGACGTACCGCGGCGTGCGCATGCGGGCCTGGGGCAAGTGGGTGTCGGAGATCCGCGAGCCCCGCAAGAAGTC
GCGCATCTGGCTCGGCACCTTCGACACCGCGGAGATGGCCGCGCGCGCCCACGACGTCGCCGCGCTCGCCATCAAGGGCC
GCGCCGCCGCGCACCTCAACTTCCCGGAGACCGCGCACCAGCTGCCCCGCCCCGCCACCTCCGCGCCGGAGGACGTGCGA
GCTGCGGCCGCGCTCGCCGCGCAAATGGACCGCGCACCGGACGCGGACGCCGTCGAGGACACGGACACCAAGGTCGAGGA
GCCAGCGCCGGCACCTGCAGCGGCAGCGCACGCGTTGCCGGACGACCACATTCTTGACCTTGCGCTCTTCGACCTGCCGG
AGTTCCTTCACGAGTTCGGCTTCGCGTTGCCTCCCTCGACGTATGATGCCTACTCCTGGCACGACGTCGGGGCCGACGAC
TTCCGGTTCGAGCCGGCGCCGTTGCTGCTCTGGGAGCACTAATGATCCGTGTCGTGTGACGAGCAGCTAGGGACCGGGCC
GGCAACACGCGGCATACATGTCAGTTCCAAGTTGGGTTTATGGTGATGATCTGCATGCGGCGTGTTACCGAGCACACTGG
TAAAATCGACTCCTGCGTGGTGTACTAAAAAGGGCAACTGCAGTAGAATCGCAGGCTAAAGATAGTTTGTGGATTCATAC
CTTCTTAAAACTGAATAAAGCTCAGCTACTTTACATGGTGATTCGTGCCACATACTCTTGAACTTGCTCCTCTGGTGT--
--TGTTCATATGTC-GAGTCTATTTCCCCATCCGCATTACCAGAAAAGGTGTTCCTGATCGAAAATACTGGCCAACTTAT
CTTGCAGTGACACTGCATGCAGTTTTGTGTGCATTTGCTATTCATCAGTTGCCTGAAATTCCGATTAGGGTTGATCGCTT
TTGGGCGAAGGACAAGGCGGAGT-----------------GGCCGAGCCAGGAGCGATCCCGAGTCAGAGCAGACATGGC
AGCACTAGTAGAAAAGGGGGCTTTGGTCCAGGCCGGGTAAGCCCATTAGTCCCGATTCAGTCCAGAACCGGGACCAATGG
ATGCATTTATCCCGGTTCGTGCGGCTAAGGCATTAGTCCCGGTTCACCTGGACCCTTTAGTTCCGGTTCGTGCCACGAAC
CGGGACCTTTAGTCCTGGTTGGTGCCACCAATCGGGACTAATGGGTTTTGAGGCATTAGTACCGGTTCATGGCACGAACC
GGTACTAAAGGTCCCATTTTCAAACTCTCCCCTCCTCCCCCCGTGGACCGCCTTTTCAGTTTTAGAAAAAACAAAAGAAA
ATGATGGAAATGTCAAAAAAAATAAAATAAGTTTCCCATGTGATATGTGGTCTAGTTGTTGGGAAAATTTACAAATATGA
ATTTTGACTTTATTTACAAAATCTCTCTGGAATTTGTAAAATGGGCATAACTTTTGCATACGAACTCGGATTAAAAAGTT
TTTTATATGAAAAAGCATCTACTCGAAAAGTTACATCCGATGGAGACCGCCTATGGCCTGTTTGCAAATTTGTAGAATCC
TCAAATTCCAAAAGAAAAAAAGTTATGCTCAAATTTCAGATTTTTTAAATTTTCATTAAATCTGGTCAAACTATGGTCAA
ACTACTTATTCAAGAAGTATTAGTGTTACTAAATAATTATTCAAAAATATTAGTGTTATTAATTTCAGTTTTTTTGAATT
TTGGTCAAATCTGGTCAGACTATGGTCAAACAATGGTCAAACTACTTATTCAAGAAATATTAGTGTTACTAAAAAATTAT
TGTTTTTTTAGAACAATAGTTTCAAACTCAAACAGTGAAATGTGTGACTTCATGCTCAAGCTAAACTCCTGAGGGTTAAT
AGGATTGACATCTTACTATTGTGAGGAAAACAACGAGTGCAGACTTGGAAACGAGGGAGAATAGAACCCGGAAGTTAAGC
GTGCTCAGGCTGGGGGAGTGGGAGGATGGGTGACCGTCCGGGAAGTTAGATGATTTGGAATGATGAGGGGTGATTAGAGA
TTAAATTGAGCAGTGATGAGGGGTGATTAGAGATTAGAGGTTAAAATAATTCAGAAATTTGAAAATAAAAAAAATCAAAA
AATTCCCTTTAGTACCGGTTGGTGTTACCAACCGGGACTAAAGGTGGACCGGCCACGTGGAGAGCCTTTAGTCCTGGTTC
TGGTTTGAGTCGGAGGTTGACGGATTCGGGTGTTGGGGCTTGCTTGGAGGTTGCCCACGACGGAGATTGTGCCGGGGTTT
AGAGGT---CTGGCCGGGGCTTCGGCAACACGTGGAGGGGTGGCGAGGCATGTGCGCGGCATCGTAGTCGACCGCTGGGT
GGCGTGGCGACAATAGGCAGTTAGGCCGGCG-------TCGATTGGCGGCAGCATCGAGAGGTGGAGGAAGAA-------
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>SNPs
--------S-------------------------S-S-S---SS---------S-------S--S---------------
-S------------------------SSSS-----S-----S----------------------------S-------S-
---------------------------S----------S---------------SS------SS----------------
---------------SS--------------S----S----------------------------S---S------S---
----S----------------------------------------------S---------------S-S----------
------------------------------------------------------------------S--SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S-------------------------S------------
----------------------------------S-----------------------------------S---------
---SS---------------------------------------------------------------------------
--------------------------------------------------------S-------------------SS--
--------------------------------S----S-S---------------------------------------S
---------------------------------------------------------------S----------------
--------------SS---------S--------S---------------------------------------------
----------S--------S----S---------------------SS--S------------------S----------
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--------------------------------S----S------------------------------------------
---------------------S--------------------S---S---------------------------------
----------------------------------S---------------------------------------------
---------------------------------------------------------------------S----------
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---------------S-----------------S----------------------------------------------
------------------------S------------S-----------------------------------------S
--------------S-----------------------------------------------------------------
----------------------------------------------------------S---------------------
-------------S---------------------------S-------------S---------------S----S---
S-------S--S--------------------------------------------------------------------
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-----------S--------------------------S----------------S---S--------------------
------SSS--------------S---------------------------------------------------S----
------------------------------SS-------------------------------S--------------S-
---------------------SS---------S-------------S--S-------S--S--SSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_517
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-----------------GCGAGGCTGATCACTCATCA-------------------------------------------
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>reverse_1567
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----------------------------------------------GACATTCTTGACCTCGCGCT--------------
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>forward_880
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------------------------------------------------------------TGCGCACCTGACACTACAAA
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>reverse_3919
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TGCTTGATTGGAGCGTCG
