>input_sequence_71841
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----------ATGGCGTCCACCAACGGCTACGGCAACGTCACCGGCGGCGGCCTCCCCACCCACACCGCCACCTCCAAGC
CGCCCGTCGACGACCCGCGCCACCAGAAGCAGCGCCTGCGCCGCCGCCGCGGCTGCCTCTGCTGCGCGTGCCTCGCCGTC
ACCCTCGTCCTCGTCGCCGTCGTCCTCCTGATCCTCTTCCTCACCGTGCTCCGCGTCCGGGACCCGACCACGCGGCTCGT
CTCCACGCGCCTCATCGGCGTCGCCCCGCGCCTCACCTTCCCGGCGCTCAACATCCAGCTCAACGTCACCCTCCTCCTCA
CGGTGTCCGTGCACAACCCCAACCCGGCCTCCTTCTCCTTCCCCTCGGGCGGCCACACCGACCTCACCTACCGCGGCGCC
CACGTCGGCGACGCCGAGATCGACCCCGGCCGCGTCCCCAGCAAGGGGGACGGGGACGTGCAGCTGGCGCTGACGCTGCA
GGCGGACCGGTTCGCCGGGGACCTGGCGCAGCTGGTCGCCGACGTGGAGGCCGGGTCGCTGCCGCTGGAGGCCAGCACCA
GGATCCCCGGGCGGGTGGCGGTGTTCGGCGTGTTCAAGCGCCACGCCGTCGCCTACTCCGACTGCAGCTTCGTCTTCGGC
GTCGCGGAGATGGGCGTCCGCAGCCAGGAGTGCCGCGACCACACCAAGCTCTGA--------------------------
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--
>chr5B_1_TraesCS5B01G144300
GCACTATGGCTAGTCTCAGTTCTAAATGCTCTAATAACCAGTGCATATTCCAAAAGACAGGGATCCTGAGATGCCAGCAA
GAGGAGATCCGTCTCTGGACGTCCACGGTGGACTTGGAGCTGGCCGTGATGTCCGTCTCCATGACTCCCATCCTGGTACG
GTTGGGCGTGGAAACAAGATGACACCGCGATACCAACAGACGGGGAGGATTGCTGGTACCGGTTGGAGCGTGGAAACACG
GGAGCGATCATCAGCTCAGT------------------------------------------------------------
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---------AAGTGCTGGACGTGGACGGGCAACGGAACTGTGGGACTAATTGGCGCACCCCGTCGGGC-GACGACGGCGA
CCACGACGCGTTGCCCGCCCAAAGCGCGGCTTCCCAATTTAATTCGTCCTCGCCCAGCCCTGCGTAGTGGGCGCCGTGTC
AGTTCGTTTCGCGCTCCTAGTCGCCGGTCTGGTTGGTTGGTGCGGCGCCGCCCATGGCGAGCCAACCTTGTGCTGTCC--
--CAGTATTCAATTCCCAACGCCCAGCCATACACCC-AACCGTCCAACCATCGGCAGTAC------ACTGTGTGAGACTC
CTGTGAAGACCATCAACAACCACTCCGATGTGATCGTGTACATGT--TTGTTTTCTTTTCTTTCGTTGGGATCGTGTA--
------------------------------CATGTTCCCAAATAGAAT----CACTAGGCTGTGTACTATCGGTGTGCTT
GATCCCCCTCCCCGTTTCA--TGCGTGCTGTAAAAGGAAAATGAT---TA--CATCTTGAAAAGCAAAATATTTGTAG-T
TTCACACAGAAACGATATTTTGCGTACATGGAAACAACTCAGAAAAATCGATTCGCATTTGCGC---TAGCCGTGTTTAG
AAGCAGTATAAAAGTCGTCATCCGGGCATTGGTATCCTTCCATCCCCACCGAAAAATCGAATCAAACCACCTCCACCTCC
GCCTCCACGCACGCTCGCACGCACGCTCGCCGCCACTGCAAGTTTGCAACCCCCTCCATCTCTCTCAACATCCCGAGCCT
GCCCCAACCAATGGCGTCCACCAACGGCTACGGCAACGTCACCGGCGGCGGCCTCCCCACCCACACCGCCACCTCCAAGC
CGCCCGTCGACGACCCGCGCCACCAGAAGCAGCGCCTGCGCCGCCGCCGCGGCTGCCTCTGCTGCGCGTGCCTCGCCGTC
ACCCTCGTCCTCGTCGCCGTCGTCCTCCTGATCCTCTTCCTCACCGTGCTCCGCGTCCGGGACCCGACCACGCGGCTCGT
CTCCACGCGCCTCATCGGCGTCGCCCCGCGCCTCACCTTCCCGGCGCTCAACATCCAGCTCAACGTCACCCTCCTCCTCA
CGGTGTCCGTGCACAACCCCAACCCGGCCTCCTTCTCCTTCCCCTCGGGCGGCCACACCGACCTCACCTACCGCGGCGCC
CACGTCGGCGACGCCGAGATCGACCCCGGCCGCGTCCCCAGCAAGGGGGACGGGGACGTGCAGCTGGCGCTGACGCTGCA
GGCGGACCGGTTCGCCGGGGACCTGGCGCAGCTGGTCGCCGACGTGGAGGCCGGGTCGCTGCCGCTGGAGGCCAGCACCA
GGATCCCCGGGCGGGTGGCGGTGTTCGGCGTGTTCAAGCGCCACGCCGTCGCCTACTCCGACTGCAGCTTCGTCTTCGGC
GTCGCGGAGATGGGCGTCCGCAGCCAGGAGTGCCGCGACCACACCAAGCTCTGATCCTACCGACC--------TTCCTTC
GTCCGTCCGTTCGACGG----TGTCCGTCTCCGCCGCGCGCGTCGCCGGAGATGGAGGCGAGGAGGATCCC-TTTTTGTG
CCATGTTCGTTTGATACGCACGGCACGTGTGGGTGGGGCCGGCGACGTCGTTGTCATCACGGAGAGAAGAGAAAAGAGTT
CTAGAATTCGTTCCTGACGGT----GCTTCATCATCAGTATAGTACAG---------TACTGCTGTAGTTAGTCTCGGCC
TTGGGTAGA--ATTAATTTGTCGTTTCAGTTGTTTCCATTGCTAGGCTTGATCTTGCGATTTTGATGGAATTTTCTTGT-
----ACAGAGACAGGGTGGAC--------TAGTATACACGGATATTGCTTGCTCTTATTGTTCATCACATCATCATC---
-----ATGTGTTTAGATTCTTGCTTAGTGCGCACGAATCCTAAGCACGGCCTCATCTTATATTATGCTTAT---------
-ATATAGCTTGCTGTTACGGGGTCGCTCGGAGACCTTCCTCGAGTGCTTGATGTTCTGATTACTCTACATAATCCTC---
TAAAGCCAAGCCAGACCACCTGTGCTGAAAGTTCAAAAAAAGCCACCTGTGCTGAAAGTAATTTTTAGGTTACAATATGG
TGGATTCGTGATGCCACCAAATATGTCGGCAAATA-AAGTCAAACAAACATAAGCAGTGAAAAATAAACCCTGTTTCTAG
TCCTGTTTCCTCTGATCAATGAAAGCTCCCCTTTTCCTCACAAAGGGGACGAAAAAGGATACAAATGCCAGGGATAAATC
GAGGCCGTCAGCCAGTCCATCAGAAGCTCTATCTGACGGCTAAAATTAACAGGAAGAGCAGCCATCAATCATCATGACAG
ACCAGCACGATTAATAAGGCAGATGAATTACAGCTCGGCACAATTAACACTACTAGTACGCCAGCAGCTCACCCTACACC
AGTCGCATCAAACC-----AAGCCGTGTTCGAATTCGCCACTGCGTCATTTCGGTGTCACAAGAGAGTATTACATCCAAG
TG
>chr5A_31
------------------------------CTAATAACTAGTGCATGTTCCAAAAGACAGA-ATCCTGAGATGCC--CAA
GAGGAGATCCGTCTGTGGACGTCAACGGTGGACTTGGAGCTGGCCGTGATGTCCGCCTCCATGACCCCCATCCTGGTACG
GTTGGGCGTGGAAACATGATGACACCGCGATACCAACAGAACGGGAGGATCGCTGGTACCGGTTGGAGCGTGGAAACACG
GGAGCGATCATCAGCTGAGTAAGTGCTGGACGTGTGTCAGCTTACCTATGTCAATTCTGGGGCAGGATTGATTCTCCTCT
TCCTGAGATCATTTGGCATATCAAGGTTCCACCAAGAATAAGATTCTTCAGTTGGCTCTTTGTACAGGGCAAATGTTTGA
CTGCGGACAACCTTGCGAAGCGAGGTTGGCCTCACAACCCGATCTGTCAATTATGCCACTTAGGGTGGGAGGATGGTCTG
CACCTTGTATCTAGCTGCCCCTTCACGGCTGGTATTTGGGGCTATTGCCTGGCGATATATAATTTTCCATTCAACCTCTT
ACCTATTGCTCATACTGGCTCTATATTGGACTGATGGTTAAAGGCTCTGGATCGTACAGGCAGGAAAAAGGACCTATCAT
CACTTATAATGACGGTGTCCTGGCAGGTTTGGAAAGAAAGAAACAGCCGCATATTCAACAACAAGGCAAACCACTTCCTG
AAGGTCGCTGAGAACATTATCAATGAGCTGAATTCTTGGAGAATCGCTGGATTCAAAGGAGCACAATGGACAGGCGCGAG
ATAATTTCTTTCTTTCTTTCTTTCTTTTTCTAGTGTACATTTGTATAGCTTTTCCTTCCCCTTTCTGGCCTTCAGCCGTC
CTGAACCTTGACATGTATTTCTTGGGGTGTCTCATCCTATCTTAATGAATGAAATCAGCACAATGCTGTTTTTCGTCAAA
AAAAAAAAAAAGTGCTGGACGTGTACGGGCAACGGAACTGGAGGACTAATTGGCGCGCCCCGTCGGGC-GACGACGGCGA
CCACGACGCGTTGCCCGCCCAAAGCGCGGCC-----ATTTATTTCGTCCCTGCCCAGCCCTGCGTAGTGGGGGTCGTGTC
AGTTCGCTTCGCGCTCCTTGTCGCCGGTCTGGTTGGTTGGTGCGGCGCCGCCCATGGCGAGCCAACCCTGTGATGTTCCC
GTCAGTATTCAATTCCCAACGCCCAGCCATACACCC-AACCGTTGG---------AGTAC------ACTATGTGAGACTC
CTGTGAAGACCATCAACAACCACTCCGATGTGATCGTGTAGTACATGTTTTTTTCTTTTCTTTCGTTGGGATCGTGTA--
--------------------------------------------GAAT----CACTAGGCTGTGTGCTATCGGTGTGCTC
GATCCGCCTCCCCGTTTCA--CGCGTGCTGTAAAAGGAAAATTATAACTA--CATCCTTAAAAGCAAAATATTTGTAGTT
TTCACACAGAAACGATATTTTGCGTACATGGAAACAACTCAGAAAAATCGATTCGCATTTGCACTAGTAGCCGTGTTTAG
AAGCAGTATAAAAGTCGTCATCCGGGCATTGATATCCTTCCATCCCCACCGGAAAATCGAATCAAACCACCCCCACCTCC
GCA------------CGCACGCACGCTCGCCGCCACTCCAAGTTTGCAACCCCCTCGATCTCTCTCAGCATCCCGAGCCC
GCCCCAACCAATGGCGTCCACCAACGGCTACGGCAGCGTCACCGGCGGCGGCCTCCCCACGCACACGGCCACCTCCAAGC
CGCCCGTCGACGACCCGCGCCACCAGAAGCAGCGCCTGCGCCGGCGCCGCGGCTGCCTCTGCTGCGCGTGCCTGGCCGTC
ACCCTCGTCCTCATCGCCGTCGTGCTCCTGATCCTCTTCCTCACCGTGCTCCGCGTGCGGGACCCGACGACGCGGCTCGT
CTCCACGCGCCTCATCGGCGTGGCCCCGCGCCTCACCTTCCCGGCGCTCAGCATCCAGCTCAACGTCACCCTCCTCATCA
CGGTGTCCGTGCACAACCCCAACCCGGCCTCCTTCTCCTTCCCCACGGGCGGCCACACGGACCTCACCTACCGCGGCGCC
CACGTCGGCGACGCCGAGATCGACCCCGGCCGCGTCCCCAGTAAGGGGGACGCGGACGTGAAGCTGGCGCTGACGCTGCA
GGCGGAGCGGTTCGCCGGGGACCTGGCGCAGCTGGTCGCGGACGTGGAGGCCGGATCGCTGCCGCTGGAGGCCAGCACCA
GGATCCCCGGGCGGGTGGCGGTGTTCGGCGTGTTCAAGCGCCACGCCGTCGCCTACTCCGACTGCAGCTTCGTCTTCGGC
GTCGCGGAGCTGGGCGTCCGCAGCCAGGAGTGTCGCGACCACACCAAGCTCTGATCCTCCCCTTCGT------TTCGTCC
GTCCGTCCGCTCGACGATAGTTGTCCGTCTCCGCCGCGGGCGTCGCCGGAGATGGAGGCGAGGAGGAGACCTTTTTTGTG
CCGTGTTCGTTTGATACGCACGGCACGTGTGGGTGGGGCCGGCGACATCGTTGTCATCACGGAGAGAAGAGAAAAGGGTG
AGGTGTTTCTGGAATTTCCGATGACGCTTCATCATCATTTCATCAGTATAGTACTCCTACTGCTGTAGTTAGTCTCGGCC
TTGGGTAGA--ATTAATTTGTCTTTTTAGCTGTTTCCAGTGCTGGGTTTGGTCTTGCGATTTTGATGGAATTTTCTTGT-
----ACAGAGACAGACAGGGTGGATTGATTAGTATACACGGATATGTCTTGCTCTTATTGTTCATCACATCATCATCATC
ACATCATGTGTCTAGATTCTTGCTTTGAGCGCACGAATCCTAAGCACGACCTCATCCTATATTATGCT--T---------
-ATATAGCTTGCTGTTACGGGGTCGCTTCGAGGCCTTCCCCGAGCACTTGATCCTCTGATTACTCTCTATATATAATCCT
TAAAGCCAAGCCACCTGT-------------------------CACCTGTGCTGAAAGTAATTTTCAGGTTACAACATCG
TGGATTCGTGATGCCACCAAATATGTCGGCAAATACAGGTCAAACATAC--AAGCAGTGAAAAATAAACCCTGTGTGTAG
TCCTTTTTCCTCTGATCAATGAAAGCTCCCCTTTTCCTCGCGAAGGGAACGAAAAAGGGTATCAAAGGCAAGGACAAATC
GAGGCCGTCAGCCAATCCATCTGAAGCTCTATCTGACGGCTAAAATTAACAGGAAGAGCAGCCATCACTAATCGTGACAG
GACAGCACAATTAATAAGGCAGATGAATTACAGCTCAGCACAATTAACACC---AGTACGCCAGCAACTCACCCTACACC
AGTCGCATCAAACCAAGCCAAGCCATGTTCGATTTCGCCACTGCATCATTTCGGTGTCA---------------------
--
>chr5D_54
-----------------------------------------------------AAGACAGGGATCCTGAGATGCCAGCAA
GAGGAGATCCGTCTCTGGACGTCAACGGTGGACTTGGAGCTGGCCATGATGTCCGTCTCCATGACTCCCATCCTGGCACG
GTTGGGCGTGGAAACATGATGACACCGCGATACCAACAGACGGGGAGGATTGCTGGTACCGGTTGGAGCGTGGAAACACG
GG----------AGCTCAGT------------------------------------------------------------
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---------AAGTGCTGGACGTGGACGGGCAACGGAACTGGAGGACTAATTGGCGCGGCCCATCAGGCGGACGACGGCGA
CCACGACGCGTTGCCCGCCCAGAGCGCGGCC-----ATTTAATTCGTCCCCGCCCAGCCCTGCGTAGTGGGCGTCGTGTC
AGTTCGCTTCGCGCCCCTCGTCGCCGGTCTGGTTGGTTGGTGCGGCGCCGCCCATGGCGAGCCAGCCTTGCCCCGTCC--
--CAGCATTCAATTCCCAACGCCCAGCCATACACCCCAACCGTCCAACCATTGGGAGTACACTGTCACTGTGTGAGACTC
CTGTGAAGACCATCAACAACCACTCCGATGTGATCGTGTACATGT--TTTTTTCCTTTTCTTTCGTTGGGATCGTGTACA
TGTCCCCCCGCAAAAAAAAAGGATCGTGTACATGTTCCCAAATAGAATTACGCACTAGGCCGTGTACTATCGGTGTGCCC
GATCCGCCTCCCCGTTGCATGCGCGTGCTGTAAAAGGAAAATGAT---TAAACATCTTTAAAAGAAAAATATTTGTAG-T
TTCACACAGAAACGATATTTTGCGTACATGGAAACAACTCAGAGAAATCGATTCGCATTTGCACTAGTAGCCGTGTTTAG
AAGCAGTATAAAAGTCGTCATCCGGGCATTGATATCCTTCCATCCCCACCGGAAAATCGAATCAAACCACCTCCGCCTCC
GCCTCCACGCACGCACCCACGCACGCTCGCCGCCACTGCAAGTTTGCAACCCCCTCGATCTCTCCCAGCATCCCGAGCCT
GCCCCAACCAATGGCGTCCACCAACGGCTACGGCAACGTTACCGGCGGCGGCCTCCCGACGCACACCGCCACCTCCAAGC
CGCCCGTCGACGACCCGCGCCACCAGAAGCAGCGCCTGCGGCGCCGCCGCGGCTGCCTCTGCTGCGCGTGCCTGGCCGTC
ACCCTCGTCCTCGTCGCCGTCGTCCTCCTGATCCTCTTCCTCACCGTGCTCCGCGTCCGGGACCCGACCACGCGGCTCGT
CTCCACGCGCCTCATCGGCGTGGCCCCGCGCCTCACCTTCCCGGCGCTCAACATCCAGCTCAACGTCACCCTCCTCCTCA
CGGTGTCCGTGCACAACCCCAACCCGGCCTCCTTCTCCTTCCCGTCGGGCGGCCACACGGACCTCACCTACCGCGGCGCC
CACGTCGGCGACGCCGAGATCGACCCCGGCCGCGTCCCCAGCAAGGGGGACGCGGACGTGAAGCTTGCGCTGACGCTGCA
GGCGGACCGGTTCGCCGGGGACCTGGCGCAGCTGGTCACGGACGTGGAGACCGGGTCGCTGCCGCTGGAGGCCAGCACCA
GGATCCCCGGGCGGGTGGCGGTGTTCGGCGTGTTCAAGCGCCACGCCGTCGCCTACTCCGACTGCAGCTTCGTATTCGGC
GTCGCGGAGCTGGGCGTCCGCAGCCAGGAGTGCCGCGACCACACCAAGCTCTGATCCTACCGACCTTCCTTCGTTCCTTC
GTCCGTCCGTTCGACGATAGCTGTCCGTCTCCGCCGCGCGCGTCGCCGGAGATGGAAGCGAGGAGGACACCTTTTCC-TG
CCGAGTTCGATTGATACGCACGGCACGTGTGGGTGGGGCCGGCGACGTCGTTGTCATCACGGAGAGAAGAGAAAAGAGTG
AGGTGTTTCTGGAATTTTCGTCGACGCTTCATCATCAGTATAGTA--------------------TAGTTAGTCTCGGAC
TTGGTAGAATTATGAATTTGTCATTTTAGTTGTTTCCATTGCTGGGTTTGGTCTTACGATTTTGATGGAATATCTTGTAC
AGAGACAGAGAGAGACAGGGTGGGCTAGTTAGTATACGCACATATGGCTTGCTCTTATTGTTCATCGCATCATCATC---
-----ATGTGTCTAGATTCTTGCTTTGTGCGCACGAATCCTAAGCGCGGCCTTATTATCTTATACGTATGCTTTATACTC
CATATAGCTTGCTGTTAGGGGGTCGCTCGGAGACCTTCCTCGAGTCCTTGATGTTCTGATTACTTTACATAACCCTT---
TAAAGCC--------------------------------AAGCCACCTGTGCTGAAAGTAATTTTCAGGTTACAACATCC
TGGATTCGTGATGCCACCAAATATGTCGGCAAATACAAGTCAAACATACGCAGGCAGTGAAAAATAAACCCTGTTTCTAG
TCCTGTTTCCTCTGATCAATGAAAGCTCCCTTTCTCCTCACAAAGGGGACGAAAAAGGATATCAAAGCCAGGGACAAATC
GAGGCCGTCAGCCAGTCCATCAGAGGCTCTATCTGACGGCTAAGATTAACAGGAAGAGCAGCCATCAATCATCGCGACAG
ACCAGCACAATTAATAAGGCAGATGAATTACAGCTCAGCACAATTAACACT---AGTACGCCAGCAGCTCACCCTACACC
AGTCGCATCAAACCAAACCAAGTCATGTTGGAATTCGCCACTGCATCATTTCGGTGTCACCAGAGTAATACATCAAGTG-
--
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------S-------S---------------------------------
-----------------------S--------------------------------------------------------
----------------S---------------------------------------------------------------
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----------------------------------------SS--------------S-----------------------
------------------------------SSSSSS-------------S-----------------------S------
------S-----------S-------------------------------------------------------------
---------------------------------------------------S--S-------------------------
-------------------------------------------------S------------------------------
-------------------------------------------------------------------------------S
-----S---------------S------------------------------------S---------------------
--------------------------------------------------------------S-----------------
-------------------------------S-------------------S----------------------------
--------------S-----------------------------------------S----------S------------
------------------------------------------------------------S-------------------
-------------------------------------------------------------------------S------
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---------------------S----------------------------------------------------------
----------------------------------------------------------S---------------------
----------------------------------------------------S-------S-------------------
---------------------------------------S----------------------------------------
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---------S----------------------------------------------------------------------
----------------S--------------------------------------------------SS-----------
--S----------------------------------------------------------------------------S
SSSSSS---SSSSS-SS-S--------------------------SSS--------------------------------
----------------------S---S----------------S--S---S-----------------------------
--------------SSS--SS------------------------S----------------------------------
-----------S-------------S------------------------------S------------S----------
---------------------------------------------S--------------------------S---S---
-------------SSSSSSSSSSSSSSSSSSSSSSSSSS--------------------------S---------S--S-
----------------------------------------------S--SS-----------------------------
-------------------------------------------------------------SS--S--------S-----
-------------------------------------------------------------------------S------
--------S---------------------------S--------------SSS--------------------------
------------------------S-------------------S---------------S----SSSSSS-SSSSSSSS
SS
>forward_1652
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--------------------------------TATCCTTCCATCCCCACCGA----------------------------
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--
>reverse_3266
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-----------------------------------------------------------------TGCCAGGGATAAATC
GAGGC---------------------------------------------------------------------------
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--
