>input_sequence_71830
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----------------------------------------ATGGCGATTGCTTCTCTCATCGCCTCCAGGTTCGCCAGGT
CCGGCCACGGGCACGCCCTCCCCGCCGCCGCCGCGGCCATCTCTCAGGTGCCGCCTCCCCCTCCAACTCTTGCCCCTTGC
TCAAAATGCAAATC-TTGGTTGTTCCTCCGCCGATGTTGATCTGATATGCTGGTTTGTTCCACCGCGCGCGCGATCTGGT
GGTGGTCAGGCGCCCAGGGCCCAGCACGCCGCATCTCCGCTGCTCTCCGGCTTCGGACCACTCACTCGCGCCTTCAGGTA
ACCACCATCACCA-GCTCAACTCACTACGTACGTG----CACAGATAACTAGCTGATCCGCTCAACATTGAAATTGAATC
GAATGTATGCCCTACCCTGCTGTCCTGTATGTGTGTGTGTGCAGCTCAAGGCCTCTATGGAAGGGAGCGTTCGTCGACGC
GTTCCTGCAAAGGATAAAGAACAAGAGGGAGAACCTCAACGGCAAGAAGATCTGGTCTCGCAGGTCTTCCATCCTGCCGG
AGTTCGTCGGTTCCACCGTGCTCATTTACAACGGCAAGACTCACGTCCGCTGCAAGATCACCGAGGGGAAGGTCGGCCAT
AAGCTTGGGGAGTTTGCTTTTACGCGCAGACGGAGGCCCCATCGGGCCATTTTGGCGAAG------GGCGGTCAAGGAAA
GGGGAAGAAGAAGTAA----------------------------------------------------------------
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>chr3B_1_TraesCS3B01G602100
AGGTTTGAGAAGGCCCGAATGCATAT-AAAATACATGGGATTGGACAAATGATGTGAAAGTTGTGCATAGGACAAAGTTA
GGGGGTGCTTTGCCCAAACTTGGTGCAAACATGAGTTTGGTTTGCTCAGATTTGAGAACAAAGTGTACCACCAGAAACAT
AGCAAAATTATGGTCAAGAAACATAAACCATTTGCCAAATTACGTGCAAACCCTACGCACTGCCGAATTATACTCAACGA
CGGTTTTGAAGTCCAGGAATCTCAAGTTCATCCAGTCATGCTCTGCGGGAGGTTGAATGGTGTACGTGAGTTTCTGAAAT
CTATTCTTCAGGGAAATTCAGAGAGTCTTGGGGTCCCTCTCCGCCAGGTACTCATTCTTGAGAATAGTCCAGAGATGACG
TCGTGGAAAATGCAGAACCTCAAAGTTCTCAATCCTTGTCGGGCTGC-ACCCTCGACTGAATCTTCGGCGACGGTGTTTC
CTAAACCTCTTCCTTCGAGTATGATTTCAACATCCAATCTCCAGGCGAGATAGTTGTGCCCATGATGAATCCGGTTCTAG
TTTTTCATGCGTATAATAGGATTACTAGCAATAATTCATGATTAAAGCAATTTCAGATTACTTGCATAATAAAAGCTACA
ATAACAATTATATTAAGAGGCACTAGAAAGCATTTAATAATAGAAAATTAAAGTTAATTACAAGGACTAAAATGTAAAAC
TTCACATTTGACTGCAATTTCCGACAAGGGG------------TTTCACGCTGGTCGGACCTTTCCGTAATTCATGAGAA
GTCCAGGGGCTTTATCGCAAAGATTAGCTCCTTTTTTTTCTACACAAGAAAATAAGCCTGGGCCATCTTCAT--------
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-------------------------------------------GGGTTGGGCCAAAGGCCACGGCCCGCTCACAGTGTGG
TTCC-GGTAAGGAAGATTTGCTCCTCCTCCTCTCCGTCTCTCCGGTCTCCA--------------CGCCGCCGCCGCCCG
CTCCTACGGGGAGCCGATCCCGCGCCTGAGCGCAGCAGCCATGGCGATTGCTTCTCTCATCGCCTCCAGGTTCGCCAGGT
CCGGCCACGGGCACGCCCTCCCCGCCGCCGCCGCGGCCATCTCTCAGGTGCCGCCTCCCCCTCCAACTCTTGCCCCTTGC
TCAAAATGCAAATC-TTGGTTGTTCCTCCGCCGATGTTGATCTGATATGCTGGTTTGTTCCACCGCGCGCGCGATCTGGT
GGTGGTCAGGCGCCCAGGGCCCAGCACGCCGCATCTCCGCTGCTCTCCGGCTTCGGACCACTCACTCGCGCCTTCAGGTA
ACCACCATCACCA-GCTCAACTCACTACGTACGTG----CACAGATAACTAGCTGATCCGCTCAACATTGAAATTGAATC
GAATGTATGCCCTACCCTGCTGTCCTGTATGTGTGTGTGTGCAGCTCAAGGCCTCTATGGAAGGGAGCGTTCGTCGACGC
GTTCCTGCAAAGGATAAAGAACAAGAGGGAGAACCTCAACGGCAAGAAGATCTGGTCTCGCAGGTCTTCCATCCTGCCGG
AGTTCGTCGGTTCCACCGTGCTCATTTACAACGGCAAGACTCACGTCCGCTGCAAGATCACCGAGGGGAAGGTCGGCCAT
AAGCTTGGGGAGTTTGCTTTTACGCGCAGACGGAGGCCCCATCGGGCCATTTTGGCGAAG------GGCGGTCAAGGAAA
GGGGAAGAAGAAGTAAGAAATGGGAATGTGCGTGCGTCAAAGGTGAGGTTACGATATTGTTATTAGAAATGGATTTGGAT
ATCAG-CAGCTGATACTGCACAAAGTTTACCCTTGCTGCATTGTAGCAAGGCTCTTTTGTTATCCTGAAATGAAA-----
TTTTCTTTAGTTGCGGCGGGTGGAAATAATAAAAACATTCGGTTGGTGCTAACTTGGGCGTTGTGGCAGAACAATCTGTG
TTGCTTGTATTTAGCTTCCAGCCTAACTTGTGATAAATGATGGAACACAGGACAAAAATAACCCACGTTGACCACATCAT
GCCTTTGCTATCCTCATAGATCTTCGTGTGGCTATCTTTTA---------------------------------------
---------------------------------------------GCTATTAGTATGTTGT--GGTCAATTTCCAATCTA
CATTTTGAAAA-TGGATGTCTTGGTAGATTGTAG------ATTCCAAACTATATTCCTATTAGATTGTACTCCCTCTCTG
AAGAAATATAAGAGTGTTTAGATCACTAAAGTAGTGATCTAAACACTCTTATATTTCTTTATGGAGGGAGTATGTACTTT
CATTACCATA----CCAAAAAGATCAGAAGTATGCGAAGATTGGTTGGGTAGATCAGAAGTTAGGGCAG-TCTGACTTCA
ACCTGCTCTCCTGTGCATTACTCTGTTTTTCTTCACTGTAGCCCATTTATCTTGTAGCACAATTTCAACCTTTGGGCATG
ATTGAATTAAATTTTCTTGATAATAGTAAAGTTG-AGATTTGTGTGTATAG-ATAACTGATACAAAATCCTGAAGTGAAC
TTATATTATAAGAGAGGTGACGTGTCAAATCATAGGAGC-GTGTCTTTTATTTAATTTTAGTTTGACAAGTGTTTTAAGG
AGCTGTACCTTATAATTATAATTCTCAGGTTCTAGTGCCGCACGTCAGGTTTCATCTTCGCCGGCAAATCTTTGTCACAT
GGTTAAGGCAGGTGACTGTGATGTTCAATATTTGTGATCAGTATCCCATATTTTACTTCTCTTATTGGGGTTGGGTTAAA
GTG
>chr3D_1
AGGTTTGAGCAGGCCCAAATGCATATAAAAATACATGGGATTGTACAAAGGATGTGAAAGTTGTGCATAGGACAAAGTGA
GGGGGTGCTTTGCCCAAACTTGGTGCAAACATGAGTTTGGTTTGCTCAAATTTGAGAACAAAGTGCACCACCAGAAACAT
AGCAAAATTCTGGTCAAGAAACATACACCATTTGCCAAATTATGTGCAAATCCTATGCAGTGCCGACTTATACTCAACGA
CAGCTTTGAAGTCCATGAATCTCAAGTTCATCCACTCATGCTCTGCACGAGGTTGAATGGTGTACCTGAGTTTCTGG--T
CTATCCTTCAGGGAAATCCAAGGAGTCTTGGGGTCCCTCTCCTACAGGTACTCATTCTTGAGAATAGTGTAGAGATGATG
CCCTGGAAAATGCAGAACCTGCAAATTCTCGGTCCTTGTCGGGGGCGTACCCTCGACTGCACCTTCGGCGACTGTGTTTC
CCAAACCTCTTTCTTGCAGTACGATTTCAACATCCGAACTCCAGGCGAGGTAGTTGTGCCCATCAATGCTAAG-------
----------------------TTCAACAAATTCTTTGTTAATAAAGCCATACAAATTTACTC-----------------
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-----------------------------------------------------------------------------GAA
GTCCAGGGGCTTCATCGCAAAGATTAGCTCCTTTTTTTTCCACACAGGAAAATAGGCCTGGTCCATCTTCATCTGAC---
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-------------------------------------------GGGTTGGGCCAAAGGCCACGGCCCGCTTACAGTGTGG
TTCCAGGTAAGGAAGATTTGCTCCTCCTCCTCCTCTCCGTCTT----TCCA--------------CGCCGCCGCCACCCG
CTCCTACGGGGAGCCGATCCCACGCCTGAGCGCAGCAGCCATGGCGATTGCTTCTCTCATCGCCTCCAGGTTCGCCAGGT
C------CGGCCACGCCCTCCCCGCCGCCGCCGCGGCCATCTCTCAGGTGCCGCCTCCCCCTCCAACTCTTGCCCCTTGC
TCAAA-TGCAAATC-TTGGTTGTTCCTGAGCCGATGTTGATCTGATTTGTTGGTTTGTTCCACCGCGCGCGCGATCTGGT
------CAGGCGCCCAGGGCCCAGCACGCCACATCTCCGCTGCTCTCCGCCTTCGGACCAGTCACTCGCGCCTTCAGGTA
ACCACCATCACAA-GCTCAGCTCACTACGTATGTGCAAACACAGATAACTAGCTGATCCGCTCAACATTGAAATTGAACC
GAATGTATGTCCTGCCCTGCTGTG-----TGTGTGTGTGTGCAGCTCAAGGCCTCTATGGAAGGGAGCGTTCGTCGACGC
GTTCCTGCAAAGAATAAAGAACAAGAGGGAGAATCTCAACGGCAAGAAGATCTGGTCCCGCAGGTCTTCCATTCTGCCGG
AGTTCGTCGGTTCCACCGTTCTCATTTACAACGGCAAGACTCACGTCCGTTGCAAGATCACCGAGGGGAAGGTCGGCCAT
AAGCTTGGGGAGTTTGCTTTTACGCGGAGGCGGAGGCCCCATCGGGCCATTTTGGCGAAG------GGCGGTCAAGGAAA
GGGGAAGAAGAAGTAAGAAAAGGGAATGTGCGTGTATGAAAGGTGAGGTTACGATATTGTTATTAGAAATGAATTTGGAT
ATCAATCAGCTGATACTGCACAAAGTTTACC-TTGCTGCATTGT---AAGGCTCTTTTGTTATCCTGAAATGAAATGAAA
TTTCCTTTAGTTGCGGC---TGGAAATAATAAAAACATTCAGTTGGTGCTAACTTGGGTCTTGTTGCACAACAATCTGTG
TTGCCTGTATTTAGCTTCCAGCCTAACTTGAGAGAAATGATGGAACACAGGACAAA------------------------
----------------TATATCTTGGTGTGCCTATCTTTTACTCCCTCCGTTCCATAATAGATGACTCAACTTTGTACTA
ACTTTAGTACAAAATTGGGTCATCTATTTTGGAACGGAGGGAGTAGCTATTAGTATGTTGT--GCCCAATTTCCAGTCTT
CATTTTGAAAA-TGGATGTCTAGGTAGATTGTAG------ATTCCAAACTATATTCTTATTAGATTGTACTCCCTCTGTA
AAGAAATATAAGAGCATTTAGATCACTAAAGTAGTGATCTAAACACTCTTATATTTCTTGATGGAGGGAGTATATAGTTT
CATTACCATA----CCAAAAAGATCAGAAGTATACGAAGATTGGTTGGGTAGATCACAAGTTAT-G-CAATCTGAATTCA
ACCTCTTCTCATGTGCATTACTCTCTTTTTCTTCACTGTAGCCCATTTATCTTGTACCACAATTTCAACCTCTGGACATG
ATTGAATTAAATTTTCGTGATAACCGTAAAGTTGTAGATTAGTTTGTATAG-ATAAATGATACAAAATTGTGAAGTGAAC
TTATATTATAAGAGAGGTGACGTGTCAAATCGTAAGAGC-GTGTCTTTTATTT--TTTTAGTTTGACAAGTGTTTTAAGC
AGCTGTACCTTATAATTATAATTCTCAGGTTCTAGTGCCGCACGGCAGGTTTCATCTTCACTGGCAAATC--TGTCACAT
GGTTATGGCAGGTGACTGTGACGTTCAATATTTGCGATCAATATCCCATATTTTACTTCTCTTATTGGGGTTGGGTTAAA
GTG
>chr3A_546
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-------------------------------------------------------------------AATCCAGTTCCAG
CTTTCCACGCGTATAGTATGATTACTAGCAACAATTCATGATTAAAGCAATTTCAGATTACTTACATAATAAAAGCTACA
AAAATAATCATATTTAAAAGCGCTAGAAAGCATTTACCAATAGAAAATTAAAGTTAACTACGAGGACTAAAATGTAAAAT
TTCAAATTTGA-TGCAATTACCAAAAAGTCGGGGGAGGCAAATTTTCACGCTGGTCGGATCTTTTTGTAATTCATGAGAA
GTCCAGGGGCTTTATCGGAAAGATTAGCTCCTTTTTT-TCTACACAAGAAAATAGGGCTGGTCCATCTTCATCTGACTAT
AGCTGGCCAAACGGGCCGTGCTAACTGGGCCGACCCAGTAGCACGCAGGAACGACATGGCCCAGGCACGGCACGACCCGA
GCTAAACGGGCTAGGCCCGGCACACGGCACGCCATGGGCCATGCCTGGGCCTGGAGGCTGGGCACGCGGGCCGGCACGGC
ACGGCCCGTTTAATTCTTTTCAGATTTTTTATATATATAAGACCTAAATTACAGCCTAATAGGCCTAAAATACAGCCCAA
TAGGCTAAAAATCAGATGGGCTAGCGTGCTAAACGTGCCACGGGCCGGCCTGTTTAATAGTCAGGCCGTGCCTGGGCCAG
AGAGCCACTCCCGTGGGCCGGCACGGCACGGCACGGCTATTAAACGTGCCATGGCGGGCCGTGCCGGGCCAGGCACGATT
AGCACGTGCTGGGCCGGCCCGTTTGGCCAGGTCTGCATCTGACGGGTTGGGCCAAAGGCCATGGCCCGCTTACAGTGTGG
TTCC-GGTAAGGAAGGTTTGCTCCTCCTCTTCCTCTCCGTCTC----TCCGGTCTCCACGCCAGCCGCCGCCGCCGC---
--------------------------------CAGCAGCCATGGCGATTGCTTCTCTCATCGCCTCCAGGTTCGCCAGGT
CCGGCCACGCCCTCCCTG---CCGCCGCGGCCGCGGCCATCTCTCAGGTGCCCCCTCCCCCTCCAACTCTTGCTCCTTGC
TCAAA-TGCAAATCTTTGGTTGTTCCTGCGCCGATGTTGATCTGATTTGTTGGTTTGTTCCACCGCGTTCGCGATCTGGT
CGTGGTCAGGCGCCCAGGGCCCAGCACGCCGCATCTCCGCTGCTCTCCGGCTTCGGACCTCTCACTCGCGCCTTCAGGTA
ACCACCATTACAAGGCTCAGCTCACTATGTATGTGCACAGATAACTAACTAGCTGATCCTCTCAACATTGAAATTGAATC
GAATGTATGCCCTGCCTTGCTGTCC------TGTGTGTGTGCAGCTCAAGGCCTCTATGGAAGGGAGCGTTCGTCGACGC
TTTCCTGCAAAGAATAAAGAACAAGAGGGAGAATCTCAACGGCAAGAAGATCTGGTCTCGCAGGTCTTCCATCCTGCCGG
AGTTCGTCGGTTCCTCCGTGCTCATTTACAACGGCAAGACTCATGTCCGTTGCAAGATCACCGAGGGGAAGGTCGGCCAT
AAGCTTGGGGAGTTTGCTTTTACGCGCAGACGCAGGCCCCATCGGGCCATTTTGGCGAAG------GGCGGTCAAGGAAA
GGGGAAGAAGAAGTAAGAAAAAGGAATGTGTGTGCGTCAAAGGTGAGGTTACGATATTGTTG---GAAATGAATTTGGAT
ATCAATCAGCTGATACTGCACAAAGTTTACC-TTGCTGCATTGT---AAGGCTCTTTTGTTATCCTGAAATGAAA-----
TTTCCTTTAGTTGCGGCGGGTGGAAATAATAGAAACATTCAGTTTGTGCTAACTTGGGCGTTGTGGCACAACAATCTCCG
TTGCTTGTATTTAGCTTCCAATCTACATTTTGGAAATGGATGTCTTGGTAGATTGCAGATTCCAAACTG-----------
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-----------------------------------------------CATTAGTATGTTGT--GGGCAATTTCCAATCTA
CATTTTGAAAA-TGGATGTCTTGGTAGATTGTAG------ATTCCAAACT-TATTCTTATTAGATTGTA-----------
------------------------------------------------------------------------TATAATTT
CATTACCATA----CAAAAAAGAT--GAAGTATGCGAAGATTGGTTGGGTACATCAGAAGCTATGG-CAATCTGAATTCA
CCCTGTTCTCCTGTGCATTACTCTGTTTTTCTTCACTGTAGCCCATTTATCTTGTAGCACAATTTCAACCTCTGGACATG
ATTGAATTACATTTTCATGACAACCGTAAAGTTGTAGATTTATTTGTATAG-ATAACTGATACTAAATTGTGAAGTGAAC
TTATATTATAAGAGAGGTGACGTGTCAAATCGTAGTAGGAGTGTGTCTTTATT--TTTTAGTTTGACAAGTGTTTTTAGG
AGCTGTACCTTATAATTATAATTCTTAGGTTCTAGTGGCACACATCAGGTTTCATCTTCGCCGGCAAATCATTGTCACAT
CGTTAAGGCAGGTGACTGTGACGTTCAATATTTGCGATCAATATCCCATATTTTACTTTTCTTATTGG---TGGGTTAAA
G--
>chr5B_1219
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-------------------CCCAGCACGCCGCGTCTCCGCTGCTCTCGGGGTTCGGATCAGCGGCTCGCGCTTTCAGGTA
ACCACCATTACAGTCATCACAGGCAGT---------------------CTCGCTATGCTGCTCAAC------ATTGACTC
CAATGTATGCCCCCAAGCTG----C------TGTCTGCGTGCAGCTCAAGGCCTCTATGGAAGGGAGCGTTCGTCGACGC
GTTCCTGCAGAGAATAAAGAATAGCGGGGGGAGCCTGAACGGCAGGAAGATCTGGTCTCGCCGGTCTTCGATCCTGCCGG
AGTTCGTCGGCTCCTCCGCGCTCATCTACAACGGCAAGACCCACGTCCGCTGCAGGGTCACCGAAGGGAAGGTCGGCCAT
AAGTTCGGGGAGTTTGCTTTTACGCGGAAACGGAGGCCCCATCGCGCGATTACGGCGAAGAAGGCCGGTGGTCAAGGAAA
GGGGAGGAAGTAGGAAG-----------------CGTGAAAGGTGAGCGGA-----------------------------
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--------------------------------------------AGCCATTACTATGTTGTGCGGGCAATTTCCAATCTA
CATTTTGAAAAATGGATGTCTTGGTAGATTGTGCTAGTACATTCCAAACTGTATTCTTATTAGATTGCG-----------
------------------------------------------------------------------------TGTAATTT
CATTATTACCATACCAAAAAAGAT--GAAGTATGCCAAGATTGGTTGGGTACATCACAAGTTAT-GGCAATCTGAATTC-
-----------------TTACTCTGTTTTTCTTCACTGTAGCCCATTTACCTTGTAGCACAATTTCAAACTCTGGGCATG
ATCGAATTAAATTTTCGTGATAACACTAAAGTTGTAGAGTTGCTTGTATAGAATAACAGATACAAAATTGTGAAGTGAAC
TTATATTATAAGAGAGGTGATGTGTCAAATCGTAGGAGC-GTGTCTTTTATTT--TTT-AGTTTGGTAAGTGTTTTAAGG
AGCTGTACCTTATAACTGTAAATCTGAGGTTCTAGCGCCGCACGTCAGGTTTCATCTTAGCCAGCAAATCTTTGTCACAT
GGTTAAGGCAGGTGACTGTGACGTTCAATAT--------AATATCCTGTATTTTACTTCTCTTATTGGGGTTGGGTTAAA
GTG
>SNPs
---------S------S--------------------------S-----S----------------------------S-
------------------------------------------------S----------------S--------------
---------S---------------S----------------S-------S----S---S------S-------------
-S-S-----------S------------------S-----------SS-----------------S----------SSS-
----S------------S--SS--------------------SS------------------------SS--------S-
S-S-----------------SS--S-----SS-----------SSSS------------S-S----------S-------
-S---------S---SS----S-------------S-S-----------S-------------S-SS----------S--
S---S--S-------S--S--------------------------------------------S----------------
-S--S---S-----S-S-S--S--------------SS-------------------S---S-----------------S
----S------S-------S--S-S---SS-----------------------------S----SS--------------
------------------------------------------------------S------S------------------
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----------------------------------------------------------------------S---------
--------------------------------SS-SS-SSSS-SSSS---------------------------------
---------------------S----------------------------------------------------------
----------S---------------------------------------------------------------------
-----S---------------------S------------------S--S------------------------------
S-------------------------------------------------------------------------------
-----------S-------S-----------S------------------------------------------------
-------------S-----------SSSS---------------------------------------------------
------------S-------------------------------------------------------------------
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--------------------S--------------------------------------------------S--------
----S--------------------------S------------SSS---------------------------------
---S------------------------------------S---------------------------S-----------
---------------------------------S-----------------------SSSS--S-SS-SSSSSSSSSSSS
SSSSSSSSSSSSSSSS--S-----S-----S-------------------------------------------------
-----------------------------------------------------------------S--------------
--------------------------------------------------------S--------------------S-S
--------------SS-------------------------------------------S----------------S---
---------------------------------------------------------------S--SSS------S----
-----S-----------------------------------------------------------------S--------
----------------S------S-------------------S------------------------SS----------
-------------------------------S---------------------SS-------------------------
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---------------------S------------S-----S---------------------------------------
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>forward_1400
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--------------------CTCCTCCTCCTCTCCGTCTC----------------------------------------
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>reverse_2464
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---------------------------------------------------------------CACGTTGACCACATCAT
GCC-----------------------------------------------------------------------------
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