>input_sequence_71813
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---------------------------------------ACAGCC-AAAAACAAGAGATATCCCAAGCACCTAGCTATTT
CTTGCCCTCTCCTCCACACACAACCATGGCGGCTGTTATTTTGTCCAACACCCGGGTTATGCCCACCAGTTATAACAAGA
CCATCATGAGCAACTTGTCCTTGCACCGTATCGGCGATGGGGCCGGCACAAATCAAGCCACTGTGATCCAAAAGGATTAC
AAGTTTGGTCATACTGCTGTTAATGACTGGGTAATTTACGAAGGTGCAGGCCCCGGTCCGGTGTTCGCCCGCGGACAAGG
CAGCCACATTCTTGCCGGCAACTCCATATCTACCATCATGATAACGTTCGAGGATCCAAGGTACGACATTTTTAAATTTT
TATGGCTTCGTTAATTAGGATA---------------------------------------GTTAATCTACATTATAAGA
AGTTAAATTATTTCTGTTTCTCATTTTCATTTTCCACATGCACATAGGTACAAGGGCTCCAGCCTTGCTCTTATGGGCAA
CATCTTGGATAATGGTCAGTGGGCTATTGTTGGAGGGACTGGGTTATTTAAGTATGCAACTGGATTCATTGACTTGGTTC
CTGTTCAACAGTCGAGCCCCAAGAACATTTCAAACATCACCATCGAAGTATGCAATCCAAATTATTGATGCAAATAAGGT
CAAAGACGAACGTCATAACTATATATGTATCCTCCATAATAAA-------------------------------------
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>chr1B_1_TraesCS1B01G042600
TGCAAGTGGAGTGGGCTTTGATTATTAGCCGATTATGCCGGTGCTATCTATTCTCTTCATGTGAAATTTATCATGGATTA
TGTTTATATAACTCTAAAAATTTATTTCAAAAGCCCGTGGCAACGCGTGGGCACTCTAATCATTTATTTTAGCTTTTGTT
ATTTCTAGTATGTATAACTGGTATCTCGAAAGGAAACTTGCAAATGGTAGCTAATTGCTCAGTAGATTTACAACAGAGCT
TGCAACTAAGTGGGGTCAACTGGCAGCTAATGGCAAGGTATT---------------------TAAAACCAATGTCATGA
CTCACGAGACTGAAAAATTAATCTCTTTCTTCCTTGTATTTGGTGATAAGCATGTGACTGATCACGTGATGCATCAAACG
TATCTGAAACAAAATTATCTTCCTGCTTGCAAGTGGAAGTTTTGTAATGCCAATACACACTGTCTCAGATGGCTGTCGAT
GCGTCGGTGTGGCCATTTGATTAGTTATCAGAGCCTGCATCGCTATTGATAAGATTAAATATTTTCCTCATGATTATACT
GGTTCGTAAAAACGTCTCAGGCTGTGTACGACCATTGTATAACATAGAACTCAAACAGTATACTCGTCTTGCTCACTA--
----------------------CACTAGCTTGTGTTTCCTAGTGCTGCGCATGTGGTTCTTCTGAGCATTCCAATGGCAG
CCCTTCTTGCGC--------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------ATGTGCTAACATTGTAAATGCAAAAGAGGCCTAAT
TGCATATCATAGTTTTTTACGCAGCTAGCCAGTTAGTCACCGACAGTGACAGTAATTAAACACTGTTGTTTGAAGTAATT
AAGTCTCTCTAAAACAGACTTACTAAATTAACTGATCCTCTGAACTCAGTGACTTTGATGATGTGTTGCTCTTATCTAGT
ACCCAGTAGCCACATGATGCATTTGCTGAGGCCTGAAGCCTCTGGACGCAGTAA-GCACACACATAGCCAAGGCATAAGC
ATGCTATATATAGACATGTGATTGCCTTTGTTACTCTCCACAGCC-AAAAACAAGAGATATCCCAAGCACCTAGCTATTT
CTTGCCCTCTCCTCCACACACAACCATGGCGGCTGTTATTTTGTCCAACACCCGGGTTATGCCCACCAGTTATAACAAGA
CCATCATGAGCAACTTGTCCTTGCACCGTATCGGCGATGGGGCCGGCACAAATCAAGCCACTGTGATCCAAAAGGATTAC
AAGTTTGGTCATACTGCTGTTAATGACTGGGTAATTTACGAAGGTGCAGGCCCCGGTCCGGTGTTCGCCCGCGGACAAGG
CAGCCACATTCTTGCCGGCAACTCCATATCTACCATCATGATAACGTTCGAGGATCCAAGGTACGACATTTTTAAATTTT
TATGGCTTCGTTAATTAGGATA---------------------------------------GTTAATCTACATTATAAGA
AGTTAAATTATTTCTGTTTCTCATTTTCATTTTCCACATGCACATAGGTACAAGGGCTCCAGCCTTGCTCTTATGGGCAA
CATCTTGGATAATGGTCAGTGGGCTATTGTTGGAGGGACTGGGTTATTTAAGTATGCAACTGGATTCATTGACTTGGTTC
CTGTTCAACAGTCGAGCCCCAAGAACATTTCAAACATCACCATCGAAGTATGCAATCCAAATTATTGATGCAAATAAGGT
CAAAGACGAACGTCATAACTATATATGTATCCTCCATAATAAAGCGGACACCGGTTGTTCGCATTTCCATGTACCAGCCA
TGCATGACCCTTTTCAATGGTGGCGTTTCAATTTGTTCCCTTGTATTTTCTCTATTCGGAGTGATTTTTTAT-TTCTACT
AGATCCTTTTCAAGGTGTTACTTCCCATTTTCATGTATTA----CTATGTTGTGCAACAAATCAATAAAGTTCATTTGGT
GGCAACCG-AACAAACTGATATAGTGATAGTATGGGCCGGACCATCTTGTTTCTACTATGGGTCAGGGCGATCTACATCA
GGTCATTGTCTAGGTACTTATGTGATCCAGCGGATGAGCCAAATAATTGTCTTATATAAACCATTATCCCTGCCGTGTTA
C-AGTCTTAACCACATAAATTACTACAATAAGTACATATGATTTCAATGAGTTTACAGGTTCTATGAATTCAAAACCATA
TTGTAGTGGCGGGTGAATTACAGTGCCCGCCACAACATAATAGGTAAAGATAAAAAGGGCATCGCGGGATGTTATAACAA
CTAGTTTACTTCCACTTGTTCCCTTTCAGAACAGTAATGCTCCCGCGACACATACTCCATTATACTTAGGCGCGGGACGA
ACATGTTCAGCCAAGATACTTGCTTCAGAGGCTCCCTGAAATTGCTCTTTTGCTTCACAGGTGGTTTGATTTTCTACGGA
GAAAGAATTGATTGTATTTTCTACTCCTGAGTGAGCGAAAAAAACCGAAAAAGCAATATCAAACAAAGGCAAAAAATCCT
GAAACTTTGCGACATCAAACATGCTCAAATGTTTTAGGCTTTTGCACAATTTTATCCACGAATGACATTCCAGGAGCTCT
GAACAGAAAATTACAAAATTACGACACAAATGTTTTTGCACTTTTTGAGCAGTGGGTTTTTTATGAGCTCCTCGAATGTT
ATTTTGAGATCAAATTTGCAAGAACCTAAAATATTTTATCATGTTTGATGTTGTAAAATTCCTGGATTTTTAGATTTTGT
TTGATTTAGT
>chr1B_1
TGCAAGTGGAGTGGGCTTTGATTATTAGCTGATTATGCCCGTGCTATCTGTTCTCTTCGTGTGAAATTTATCATGCATTA
TGTTTATATAACTCTAAAAAATTATTTCAAAAGCCCGTGGCAACGCACGGGCACTCTAATCATTTATTTTAGCTTTTGTT
ATTTCTAGTCTGTATAACTGGTATCTCGAAAGGAAACTTACAAATGGTAGCTAATTGCTCAATAGATTTACAGCAGAGCT
TGCAAATAAGTGGGGTCAACTGGCAGCTGATGGCAAGGTATTGGTAGTACACCATGCAACGAATAAAACCAATGCCATGA
CTCACGAGACAGAAAAATTAATATCTTTCTTCCTTGTATTTGGTGACAAGCATGTGACTGATCACGTGATGCATCAAACG
TATTTGAAACAAAATTAGCTTCCTGCTTGCAAGTGGAAGTTTTGTAATGCCAGTGCACACTGTCTCAGATGGCTGTCGAT
GCGTCGGTGTGGCCATTTGATTCGTTATCAGAGCCTGCATCGCTATTGATAAGATTAAATATTTTCCTCATGATTATATT
AGTTCGAGAAAACGTCTCAGGCTGTGTACGACTATTGTATAACGGAGAACCCAAACACTATACTCGTCTTGCTCACTA--
----------------------CACTAGCTTGTGTTTCCTAGTGCTGCGCATGTGGTTCTTTTGAGCATTCCAATGGCGG
CCCTTCTTACGC--------------------------------------------------------------------
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---------------------------------------------ATGTGCTAACATTGTAAATGCAAAAGAAGCCTAAT
TGCAAATCGCAGGTTTTTACGCAGCTAGCCAGTTAGTCACCGACAGCGATAGTAATTAAACGCTGTTGTTTCGAGTAATT
AAATCTCTCTAAAACAGGCTTACTAAATTAATTGATCCTCTGAACTCAGTGACTTTGATGATGTGTTGCTCTTATCTAGT
ACCCAGTAGCCACATGATGCATTTGCTGAAGGCTGATGCCTCTGGACGCAGTAA-GCACACACATAGCCAAGACACAAGC
ACTCTATAAATAGACATGTGATTCCTTTTGTTCCTCTCCACGGCCAAAAAGCAAGAGACATCCCAAGCACCTAGCTATTT
CTTGCCCTGTCCTCTGCACACACTCATGGCCGCTGTTATCTTGTCCAACACCCAGGTTATGCCCACCAGTTATAACAAGA
CCATCATGAGCAACTTGTCCTTGCACCGTATCGGCAATGGGGCCGACACAAATCAAGCCACTGTGATCCAAAAGGATTAC
AAGTTTGGTCATACTGCTGTTAATGACTGGGTAATTTACGAAGGTGCAGGCCCAGGTCCGGTGTTCGCCCGTGGACAAGG
CAGCCACATTCTTGCCGGCAACTCCATATCTACCATCGTGATAACATTCGAGGATCCAAGGTACAATGTTTTTAACTTTT
TATGGCTTCGTTAATTAGGATATTTAACAAAATTATATATCCGTTCAACACATTCTAGATTGTTAATCTACATTATCAAA
AGG--AATTATTTCTGTTTCTCATTTTCATTTTCCACATGCACATAGGTACAAGGGCTCCAGCCTTGCTGTTATGGGCAA
CATCTTGGATAATGGTCAGTGGGCTATTGTTGGAGGGACTGGGTTATTTAAGTATGCAACTGGGTTCATTGACTTGGTTC
CTGTTCAACAGTCGAGCCCCAAGAACATTTCAAACATCACCATCGAAGTATGCAATCCAAACTATTGATGCAAATAAGGT
CAAATACGAACGTCATAACTAT----GTTTCATCCATAATAAAGCAGACACCGGTTGTTCACATTTCCATGTACCAGC--
-A-ATGACCCTTTTTAATGGTGGTGTTTCAGTTTGTTCCCTTGTATTTTCTCTATTCTGGGTGAGTTTTTGTCTTGTACT
AGATCCTTTTCAGGGTGGTACTTCCCCTTTCCATGTATTA----CTATGTTGTGCGACAAATCAATAAAGTTCATTTGGT
GGCAACCG-AACAAACTAGTATATTGATAGTATGTTACGGACCATCATGTTTCTACTATGGGCCAGGGCGATCTACATCA
GGTCATTGTCTAGGTACTTATGTGATCCAGCGGACGAGCCGAATAATTGTCTTATATAAACCATTATCCATGTTGTGTTA
ATAGTCTTAACTGCATAAACTACTACAATAAATACATATGATTTCA----------------------------------
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>chr1B_155
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--------------------------------------------------------------------------TTTGTT
ATTTCTAGTCTGTATAACTGGTA-CTCGAAAGGAAACTTGCAAATGGTAGCTAATTGCTCAATAGATTTACAGCAGAGCT
TGCAAATAAGTGGGGTCAACTCGCAGCTGATGGCAAGGTATTGGTAGCACACCTTGCAAAGCATAAAATAAATGTCATGA
CTGACGAGACTGAAAAATTA--ATCTCTCTTCCTTGTATTTGGTGACAAGCATGTGACTGCTCATGTGGTGCATCAAACG
TATCTGAAACAAAATTATCTTCCTACTTGCAAGTGGAAGTTTTGTAATGCCAGCGCACACTGTCTCAGATGGCTGTCGAT
GC------------------------------------ATCGCTATTGGCAAGATTAAATATTTTCCTCGTGATTATATT
GGTTTGAGAATCCGTCTCAGGCTGTGTACGACCATTCTATATTGGAGAACTCAAACACTATACTCGTCTTGCTCACACCA
TTCTCTTCTCCGTTCTCCACTTCACTAGTTTGTGTTTTCCAGTGCTGCGCGTGTGGTTCTT---AGCATTCCAATGGCGC
CCTAGTGGCCACCATGGCTATCCGGCCACTGGTCTACAATGCTGATGAGCAAGGTGTGTAGCTCCCTCCTAGACCAGTAC
AAGGTAATGGAGGGAATGGAGAAGCAGCATAGGATTCCCAAGCGCAAGCTTCCAGCCATCATCAAAATGCCATCATCAAA
ATGGAGAAGCAGCATAGGATTCCCAAGCGCAAGCTTCCAGGCATGTGCGAATCTTGATCGGATCAACAAATTTAACTACT
AATTGTCACTAGTTGGACCCAATGCCCTATTGTTGGTTGGTGGTGATGTGCTAACATTGTAAATGTAAAAGAAGCCTAAT
TGCATATAGCAGTTTTTTACGCAGCTAGCCTGTTAGTCACCGACAGCGACAGTAATTAAACGTTGTTGTTTGGAGTAATT
AAGTCTCTCTAAAACAGACTTACTAAATTAATTGATCCTCTGAACTCAGTGACTTTGAAGATGTGTTGCTCTTATCTAGT
ACCCAGTAGCCACATGATGCATTTGCTGAGAGCTGATGCCTCTGGACGCAGTAAAGCACACACATAGCCAAGGCATAAGC
ACTCTATAAATAGACATGTGATTCCTTTTGTTCCTCTCCACAGCCAAAAAGCAAGAGACATCCCAAGCACCTAGCTATTT
CTTGCCCTCTCCTCTTCACACACTCATGGCAGCTGTTATCTTGTCCAACACCCGGATTATGCCCACCAGTTATAACAAGA
CCATCATGAGCAACTTGTCCTTGCACCGTATCGCTAACGGGGCCGACACAAATCAAGCCACTGTGATCCAAAAGGATTAC
AAGTTTGGTCATACTGCTGTTAATGACTGGGTAATTTACGAAGGTGCAGGCCCAGGTCCGGTGTTCGCCCGTGGACAAGG
CAGCCACATTCTTGCCGGCAACTCCATATCTACCATCATGATAACGTTCGAGGATCCAAGGTACAATGTTTTTAACTTTT
TATGGCTTCGTTAATTAGGATATTTAAT-AAATTATATATCCGTTCAACACATTCTAGATTGTTAATCTACATTATCAAA
AGG--AATTATTTCTGTTTCTTATTTTCATTTTCCACATGCACATAGGTACAAGGGCTCCAGCCTTGCTGTTATGGGCAA
CATCTTGGATAATGGTCAGTGGGCTATTGTTGGAGGGACTGGGTTATTTAAGTATGCAACTGGGTTCATTGACTTGGTTC
CTGTTCAACAGTCGAGCCCCAAGAACATTTCAAACATCACCATCGAAGTATGCAATCCAAACTATTGATGCAAATAAGGT
CAAATACGAACGTCATAACTAT----GTTTCATCCATAATAAAGCAGACACCGGTTGTTCACATTTCCATGTACCAGTAA
TA-ATGACCCTTTTTAATGGTGGTGTTTCAGTTTGTTCCCTTGTATTTTCTCTATTCTGGGTGAGTTTTTGTCTTGTACT
AGATCCTTTTCAGGGTGGTACTTCCCCTTTCCATGTATTATTAGCTATGTTGTGCGACAAATCAATAAAGTTCATTTGGT
GGCAACCG-AACAAACTAGTATATTGATAGTATGTTACGGACCATCATGTTTCTACTATGGGCCAGGGCGATCTACATCA
GGTCATTGTCTAGGTACTTATGTGATCCAGCGGACGAGCCGAATAATTGTCTTATATAAACCATTATCCATGTTGTGTTA
ATAGTCTTGACTGCATAAACTACTACAATAAATACATATGATTTCA----------------------------------
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>chr1B_312
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------------AAAAATTAATATCTTTCTTCCTTGTATTTGGTGACAAGCATGTGACTGGTCACATGATGCATCAAACG
TATTTGAAACAAAATTATCCTCCTGCTTGCAAGTGGAATTTTTGTAATGCCAGTGCACACTGTCTCAGATGGCTGTCGAT
GCGTCGGTGTGGCCATTTGATTCGTTATCGGAGCCTGCATCGCTATTGGTAAGATTAAATATTTTCGTCGTGGTTATATT
AGTTCGAGAAATCGTCTCAGGCTGTGTACGAC-ATTGAATAACGGAGAACCCAAACACTATACTCGTCTTGCTCACTA--
----------------------CACTAGCTTGTGTTTCCTAGTGCTGCGCATGTGGTTCTTCTGAGCATTCCGATGGTGG
CCCTTCTTACGC--------------------------------------------------------------------
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---------------------------------------------ATGTGCTAACATTGTAAATGCAAAAGAAGCCTAAT
TGCATATCGCAGGTTTTTACGCAGCTAGGCAGTTAGTCACCGACAACGTCAGTAATTAAACGCTGTTGTTTGGAGTAATT
AAGTCTCTCTAAAACATACTTACTAAATTAATTGAACCTCTGAACTCAGTGACTTTGATGATGTCTTGCTCTTATCTAAT
ACCCAGTAGCCACATGATGCATTTGCTGAGGGCTGATGCCTCTGGACGCAGTAA-GCACACACATAGCCAAGACATAAGC
ACTCTATAAATAGACAGGTGATTCCTTTTGTTCCTCTCCACAGCCAAAAAGCAAGAGACATCCCAAGCACCTAGCTATTT
CTTGCCCTCTTCTCTGCACACACTCATGGCCGCTGTTATCTTGTCCAACACCCGGGTTATGCCCATCAGTTATAACAAGA
CCATCATGAGCAACTTGTCCTTGCACCGTATCGGCAATGGGGCCGACAGAAATCAAGCCACTGTGATCTAAAAGGATTAC
AAGTTTGGTCATGCTGTTGTTAATGACTGGGTAATTTACGAAGGTGCAGGCCCAGGTCCGGTGTTCGCCCGTGGACAAGG
CAGCCACATTCTTGCCGGAAACTCCATATCTACCATCATGATAACGTTCGAGGATCCAAGGTACAATCTTTTTAACTTTT
TATGGCTTTGTTAATTAGGATATTTAAT-AAATTATATATCCGTTCAACACATTCTAGATTGTTAATCTACATTATCAAA
CGG--AATTATTTCTGTTTCTCATTTTCATTTTCCACATGCACATAGGTACAAGGGCTCCAGCCTTGCTGTTATGGGCAA
CATCTTGGATAATGGCCAGTGGGCTATTGTTGGAGGGACTGGGTTATTTAAGTATGCAACTGGGTTCATTGACTTGATTC
CTGTTCAACAGTCGAGCCCCAAGAACATTTCAAACATCACCATCGAAGTATGCAATCCAAACTATTGATGCAAATAAGGT
CAAAGACGAACGTCATAACTAT----GTTTCATCCATAATAAAGCAGACACCGGTTGTTCACATTTCCATGTACCAGC--
-A-ATGACCCTTCTTAATGGTGGTGTTTCAGTTTGTTCCCTTGTATTTTCTCTATTCTGGGTGAGTTTTTGTCTTGTAAT
AGATCCTTTTTAGGGTGGTACTTTCCATTTCCATGTATTA----CTATGTTGTGCGACAAATCAATAAAGTTCATTTGGT
GGCAACCGAAACAAACTAATATATTGATAGTATGTTACGGACCATCATGTTTCTACTATGGGCCAGGGCGATCTACATCA
GGTCATTGTCTAGGTACTTATGTGATCCAGCGGACAAGCCAAATAATTGTCTTATATAAACCATTATCCATGTTGTGTTA
ATAGTCTTAACTGCATAAACTACTACAATA----CATATGATTTCA----------------------------------
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>SNPs
-----------------------------S---------S---------S--------S----------------S----
--------------------S-------------------------SS--------------------------------
---------S---------------------------------------------------S----------S-------
-----S----------------------S---------------------------------------------------
----------------------S-----------------------S---------------------------------
----------------------------------------------------S-S-------------------------
----------------------S-------------------------------------------------------S-
------SS-----------------------------------SS------------S----------------------
------------------------------------------------------------------------------S-
--------S-----------------------------------------------------------------------
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------------------------------------------------------------------------S-------
--------SS------------------------------------S--------------S----------S-------
-------------------------------S------------------------------------------------
-------------------------------S----S-------------------------------------------
-SS-----S--------------S-S------S-----------------S-------S---------------------
--------------SS------SS------S--------S----------------------------------------
-----------------------------------S---------S----------------------------------
-----------------------------------------------------S-----------------S--------
----------------------------------------------------------------S-SS-------S----
----------------------------------------------------------------------------S-S-
--SSS----------------------------------------------------------------S----------
---------------------------------------------------------------S----------------
-------------------------------------------------------------S------------------
----------------------SSSS--S--S-------------S--------------S-----------------S-
-SS-----------S--------S------S--------------------------S-S----S-----S----S----
------------S----S------------S------------------------S------------------------
-----------------S-----S----------SSS---------S---------------S-----------------
----------------------------------S----------------------------------S--SS------
S----------SS------S-----------S--------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSS
>forward_1087
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---------------------------GCCAGTTAGTCACCGACAGT---------------------------------
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>reverse_2530
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-------------------------------------------------ATAAAAAGGGCATCGCGGGA-----------
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