>input_sequence_71805
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-----------------------------------------------------ATC--CACAACTCAACAGCCTCTCCAC
TCTCCACTCTCCACTCTCCACACCAGAGCCCAAGCATTCGCTT--CCCGTCGTCTCCTCTCCTCTCTCGATCTCAGTGAA
GTTTTCCGCAACCAACAGCAGCCAGATGGCTCGTTTCGCCGTGCTCGCGGCCATCATCGCGGTCCTCGCCGTCGCCGCCA
CCGCTCAGGGCCCCATGCCGGCGCCCAGGATGGCCCCGCTCCCCGCACCGCCGGCGAGGTCCCCGGCCACCGCCCCTGCG
CCGGTCGCCACCCCGCCCACCGCCGCGTCGCCATCCCCGATGGCCTCGCCCCCGGCCCCGCCCACCGACGCGCCGACCGA
CGCTCCCTCGGCGATGACGCCGTCCGCAGTCTCCGCCACACCCACCGGCGCCCCCACCAGCGCCCCCGCGAGCTCCGCCG
TGTACTCGTCCGCCGCCAGCTTCGTCGCCGTCGCCGGCGCGGTCGCCGCCGCCATCATGTTCTAGATGGACGGAGGATCG
TCGAGCTGATCTTCGATGTGCCGCCGCCGTGTGGCTCCGAGTCTGTCCCACCGTTGTTTATACTCCGACGAGATTCTTTT
TCGGTTCTCTTTGTTGAGCTGGGGAGTGAGTTATATGTAACACCGCCGTGTTGCGCTACACATGCGCCAGATTATTATCA
TTAATAGAATTCTTTCATTTGT----------------------------------------------------------
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>chr4B_1_TraesCS4B01G304600
CACCAGCAAGGCCGCGACGACTGCGTAAGATGAAACGCGGCGGCCACTAGACGACCATACAACCCAGCAGGCCGGCGCGT
GGACGGCCACACAACACGGCGGCGGCGGCGGCTAGCAACTCCATAAGGACTCGTCACATGCATGCAAACTCACGTTCTAC
CTACAGCTAATCAGGCTCATTACATGTGCTTGCGATCCGACTGTTGTGAAGGGGTTTCAATTAGTCAGATCTAATTTGTT
GCGTGCCTCTTGGAACCAGAGATGAACGCCGTCGCTGTTTATTAATCGAAAGGGGTTTATCACAAAGGTGCAGTTTCTTA
GGTGGATAGGCGGGCGTCTATCTGCAAATTAGTCACGCTTTAGACGTTACCCATGGGATTTGAATCAGAAGGCTCACAAC
AAATGGACACACGGATACAGAAACCCCCTGGATGCATACGATATGTTGCCTATATATATATATATTGACGACTCTGCCAG
AGTAGTTTTTTCCGACCAAAGATTATCTTATCAATGGTTATTATGGTGATCAAGACCATATAGCGGCTCAGTCAAAGTTG
CTCAATC-AAAACAGAAATAGCGCGTCGGAGAAGAGCAGAGCAGAGGAGTCGTATGGGCGACGAGTTAC--CAAACT-GA
TCGACTGATGAGTCGGTGGAGTCAAATCATTTG-----------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------CGTTTTCTATCATGAA
TTTGGCAAAGCCGAACTTCTACTCT---CCAATCTGCTAGACCACCGACTACTAA----------TACAGCAGCCGACTC
GAAGTCTCGGTACAAAATTGTACACGCCGATCCTT----------------------------CCGATTAGCCACCGG--
-GACGCGGTGCCGAGGCCCGGAGAGTTCAACTTTGCACGGCGCCGTCCCCGCGAAGACAGACTGCTCTGG-----TCTGG
TCTGACGCGTCGTCGCTGCCCATGACGCCAGCCCGAGGCTTGAACGTTCCAGCTGTTG--------CCTACCTCAACCGA
CGTTTAGAAAATCGCCTTCCCGCTATAAATACCAGGCTCCTCG-CCCGTCCCAATC--CACAACTCAACAGCCTCTCCAC
TCTCCACTCTCCACTCTCCACACCAGAGCCCAAGCATTCGCTT--CCCGTCGTCTCCTCTCCTCTCTCGATCTCAGTGAA
GTTTTCCGCAACCAACAGCAGCCAGATGGCTCGTTTCGCCGTGCTCGCGGCCATCATCGCGGTCCTCGCCGTCGCCGCCA
CCGCTCAGGGCCCCATGCCGGCGCCCAGGATGGCCCCGCTCCCCGCACCGCCGGCGAGGTCCCCGGCCACCGCCCCTGCG
CCGGTCGCCACCCCGCCCACCGCCGCGTCGCCATCCCCGATGGCCTCGCCCCCGGCCCCGCCCACCGACGCGCCGACCGA
CGCTCCCTCGGCGATGACGCCGTCCGCAGTCTCCGCCACACCCACCGGCGCCCCCACCAGCGCCCCCGCGAGCTCCGCCG
TGTACTCGTCCGCCGCCAGCTTCGTCGCCGTCGCCGGCGCGGTCGCCGCCGCCATCATGTTCTAGATGGACGGAGGATCG
TCGAGCTGATCTTCGATGTGCCGCCGCCGTGTGGCTCCGAGTCTGTCCCACCGTTGTTTATACTCCGACGAGATTCTTTT
TCGGTTCTCTTTGTTGAGCTGGGGAGTGAGTTATATGTAACACCGCCGTGTTGCGCTACACATGCGCCAGATTATTATCA
TTAATAGAATTCTTTCATTTGTTACCTGATTCATCTCCGCTCCTGGACGCATGCATATGTTCTCCATTAACTCGGTCCGA
TT--------AACCACAACCGC-AAAAATGGCAAGAAACCCTAATCTGCAACGTTACACGACTACGTGCTCTGTTCGAGC
AGTTTGCTCTGCCGTGTGGAACTGCGAATTCCCATCCCACCCATCTACGGATCAGGGGCCTACCTCTCTCGGTGACGTGA
ATCTGTGATGCGGCGTGGTACGGGGATCAAAAAGCTAAGCTAGGACGACAACGGTAAACCGATGAGAGTTGCCGTTGC--
GTTGCGTTCTCGATTG-----GGTCGGCAGGACCAAAGCCATGTGCAGAGCTCTGTTTTCTTCTCGATCGGCGCAGGCGA
GGTCACATGGTCGCATGCGCCGTTGCCTGCTTGCTTTTGTTTTTCATC--CATCATCTCTTCTTTTCTTTGCGTCCTGAT
GCCATGCCATG-----TGACCTGTTTTGGTCTGCGCGCTTCAGCTGCGAGCTAGCTGGAAATTTCTGGACTCCAATAGCG
AAAACTCGCTTTTGCTTTGGCCCATTTTGGGAAGATATCTGTAAAGATTGAAATGTGCAGAACACGCTTCTGCTTTGGCC
TGCGACGTAAATTGATTTCTGCGCGTCTGAGATGTAATTTGTTGCGGCTGGCAATGCTCTACGTCGTTGGACCAGCGCAG
GCTCCCGGCCGGTCACATATACACTGCCCAATTCATGGCTTCCTAGCCATTAGATCCAGCCTCCTAGTTTGTCCTCCCCG
TATCACTCGAGATCCCCCAAACAAATGTGTCAACATGCATAAAATGAAAGCGACGACGAGCATCACGACCGCCCATGAAA
GCACCTTATCCTACACGCATGCCCCCATCTCGCCCGCATGCATATCTCTCGTGGTGCTCGTCGGCGCTGGCGCAACATTG
CCCTACCAGTCGCTCGACCCCATATCATCCCAGCATGTACGCCAACGCAATTGCTGCACCTACCCCAATCACGTTCGTAG
CATCG
>chr4A_465
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----------------------------------------------------------------TTGATGACTCTGCTAG
GGTGATTTTGTTCGATCCAAGATCATCTTATCAATGGTTGTTACGGTGATCACGCCCATATAGCGACTCAGTCAGAGTTA
CTCACTCAAAAACAGAAATAGCGCGTCGGAGAAGAGCAGAGGAGAGGAGGCGTACGGGCGACGAGTCTGACCAAACCCGA
TCGACCGATGAGTTGGTGGAGTCAAATCATTTAGGGTCTGTCTAGGACACATCCAGATGTGGCATAACTATGTCACATCT
AAGCTGATTTCCACTCTGTTTGTGGTCTATTTTTTTGTCCTAGTTTTTTTTTATTTCTTGTTGCTGCATTATATATTTGT
GGGAGCTTAGATGTGACATTCTTAAAAAACATCTAGATGTGAATTAGACAAACTGAATCATTTACGTTCTCTATCACCAA
TTTGGCAAAGCCAAACTTCTACTCCTCACCAATCTGCCAGACCACCGACCACGAACCACACGTGATACAGCCGCCGACTC
GAAGCCTCGGTAGAAAATTGTACACACACGTCCATCCAATCTTCACCTTCTACACAACGTGTCCCCATTAACCACCGGGA
CGACGCGGTGCCGCGGCGCGAAGAGTTCAGCTTTGCGCGGCGCCGTCCCCGCGAAGACAGACTGCTCTGCTCTGCTCTGG
TCTCACGCGTCGTCGCTGCCCGTGACGACAGCCCGAGGCTTCAACGTTCCAGCTGTTGTTGCCTTGCCTGCCTCGACCGA
CGTTTGGAAAATCGCCTTCCCGCTATAAATACCAGCCTCCTCGCCCCGTCCCAGTCCTCACAACTCAACAGCCTCTCCGC
TCTCCAC--------------ACCATAGCCCAAGCGTTCGCTTCCCATCGCGTCCCATCTCCTCTCTGAACCAGCAATCA
A-----------CAACAACAGCCAGATGGCTCGCTTCGCCGTGGTCGCCGCCGTCATCGCGCTCCTCGCCGTCGCCGCCG
CCGCGCAGGGCCCCATGCCGGCGCCCAGGATGGCCCCGCTCCCCGCACCGCCGGCGAGGTCGCCGGCCACCGCCCCTGCG
CCGGTCGCCACCCCGCCCACCGCCGCGTCGCCGTCCCCGATGGCCTCGCCCCCGGCCCCGCCC------------ACCGA
CGCTCCCTCCGCGATGACGCCCTCCGCGGTCTCCGCCACGCCCACCGGTGCCCCCACCGGCGCCCCCGCGAGCTCCGCCG
TGTACTCGTCCGCCGCCAGCTTCGTCGCCGTCGCCGGCGCGGTCGCAGCCGCCATCATGTTCTAGATGTGGCGAGGGTCC
T-GAGCTGATCTTCGACCTGCCGCCGCCGTGGGGCTCTGAGTCTGATCCAACGTTGTTTATACTCCGACGAGATTCTTTT
TCGGTTCTCTTTGTTGAGCTGGGGAGTGAGTTATATGTAACACCGCCGTGTTGCGCTACACATGCGCGAGATTATCATCA
TCAATAGAATTCTTTCATTTGTTACCTGATTGATCTCCGCTCCTGGATGTACGAATCTGTTCTCTATTAATTAACCCCGC
AAAAAAAAAAAAACACAACCGCGAAAAATGGCAAGAAACCCTAATCTGCAACGCTACTCGACTACGCGCTCTGTTCGAGC
AGTTTGCTCTGCCGTGTGGAATTTGCTGAATTCTCACCCATCA--TCCGGATCAGGGGCCTACCTCCTGTCT-----TGA
ATC-TTGATGCGGCGTGGTACGGGGATCGAAAGGCTATAGCAGGACGACAACGGTAAACCGATGAGAGCGGCCGTTGCTC
GTTGCGCTGTCGATTTAGTCCGGACGGGAGGACCAAAGCCATGTGCGGAGCTCTGGTTTCGTCTCGATCGGCGCGGGCGA
GGTCACATGGCCGCATGCGCCGTTGCCTGCTCGCTTTTGTTTTTCATC--CATCGTCTCTTCTTTTCTTCGCGTCCTGAT
GCCATGCCATGCCATGTGACCTGTTTTGGTCTGCGCGCTTGAGCTGTAAGCTAGCTGGGAATTT----------------
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>chr4D_506
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-------------------------TCTTATCAATGGTTATTATGGTGATCAAAACCATATAGCGACTCGGTCAGAGTTA
CTCAATCAAAG-CAGAAGTAGCGCGTCGGAGAAGAGCAGAGGAGAGGAGGCGTATGGGCGACGAGTCTGAGCAAACT-GA
CCGACTAATGAGTCGGCGGAGTCAAATCATTT------------------------------------------------
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---------------------------------------------------------------ACGTTTTCTATCACCAA
TTTGGCAAAGCCAAACTTCTACTACTCCCCAATCTGCTAGACCACCGACTAGGAACCACACGTGATTCAGCAGCCAACTC
GAAGTCTCGGTAGAAATTTGTACACGGCG----ATCCAATCTTCACCTTCTACACAAAGTGTCCCGATTAACGACCGGGA
CGACGCGGTGCCGCGGCCCGAAGAGTTCAACTTTGCACGGCGCCGTCCTCGCGAAGACAGACTGCTCTGG-----TCTGG
TCTCACGCGTCGTCGCTGCCCATGACGCCAGCCCGAGGCTTGAACGTTCCAGCTGTTG--------CCTACCTCAACCGA
CGTTTAGAAAATCGCCTTCCCGCTATAAATAGCAGCCTCCTCGCCCCGTCCCAATC--CACAACTCAACAGCCTCTCCAC
TCTCCAC--------------ACCAGAGCCCAAGCGTTCGCTATACCCATCGTCCCATCTCCTCTCTCGATCTCAGTGAA
GTTTTCCGCAACCAACAGCAGCCAGATGGCTCGCTTCGCCGTGGTCGCCGCCGTCATCGCGGTCCTCGCCGTCGCCGCCG
CCGCTCAGGGCCCCATGCCGGCGCCCAGGATGGCCCCGCTCCCCGCACCGCCGGCGAGGTCCCCGGCCACCGCCCCTGCG
CCGGTCGCCACCCCGCCCACCGCCGCGTCGCCGTCCCCGATGGCCTCTCCCCCGGCCCCGCCCACCGACGCGCCGACCGA
CGCTCCCTCGGCGATGACGCCGTCCGCGGTCTCCGCCACGCCCACCGGCGCCCCCACCGCCACCCCCGCGAGCTCCGCCG
TGTACTCATCCGCCGCCAGCTTCGTCGCCGTCGCCGGCGCGGTCGCCGCCGCCATCATGTTCTAGATGGACGGAGGATCG
TCGAGCTGACCTTCGATGTGCCGCCGCCGTGGATCTTTGAGTCTGTCCAACCGTTGTTTATACTCCGACGAGATTCTTTT
TCGGTTCTCTTTGTTGAGCTGGGGAGTGAGTTATATGTAACGCCGCCGTGTTGCGCCACGCATGCGCCAGATTATTGTCA
TTAATAGAATTCTTTCATTTGTTACCTTATTGATCTCCGCTCCTCGATGTATGCGTCTGTTCTCCATTAACTTGTTCTGA
TT--------AACAACAACCAC-AAAATTGGCAAGAAACCCTAATGTCCATTGTTACTCGACTACGTGCTCTGTTCGAGC
AGTTTCCTCGGCCGTGTGGAACTTGACGAAGTCTCACCTATCA--TACGGATCAGGGGCCTACCTC--TCGGTGACGTGA
ATC-GTGCTGCGGCGTGCTACGGGGATCAAAAAGCTAAGCTAGGACGACAACGGTAAACCGATGAGAGTTGCCGTTGCCC
GTTGCGTTCTCGATTG-----GGTCGGCAGGACCAAAGCCATGTGCAGAGCTCTGTTTTCTTCTCGATCGGCGCGGGCGA
AGTCACATGGTCGCATGCGCCGTTGCCTGCTTGCTTTTGTTTTTCATCTCCATCGTCTCTTCTTTTCTTTGCGTCCTGAT
GCCATGCCAT-----GTGACCTGTTTTGGTCTGCGCGCTTGAGCTGTAAGCTAGCTGGGAATTTCTGGACTCCAATAGCG
AGAAT--GCTTTTGCTTTAGCCCATTTTGGGAAGATAT-------------AATCTGCAGAACACGCTTCTGCTTAGGCC
ACCGACGCAAATTGATTTCTGCGCGTCTGCGGTGTAATTTGTTGCGGC--------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----S--------S--
S--SS----S-S---S-S-----S-----------------------------------------S--------S----S
-----------------------------------------S-------S----------------SSS-----------
--------------------------------S-----------------------------------------------
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----------------------------------------------------------------------------SS--
------------S-----------S---------------------------S---------------------------
------------S----------------S---S------------------------------------S---------
-------------S------S-----------------------------------------------------------
---S----------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
-------SSSSSSSSSSSSSS--------------S------------S-----S-S-----------------------
---------------------------------S---------S----S---S--------------------------S
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--------------------------------S-----------------------------------------------
---------------------------S-----------S------------------S---------------------
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-------------------------------S-----S------------------------------------------
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-------------------------------S---------------S-S------S---------------S-S-----
---------------------------------------------------------S----------------------
-----------------------SSSSSSSSS-SSS--SSS--SS---------------------SS------------
---S----------------------------------------------------------------------------
--------------------------------------------------------------------------S-----
------------------------------------------------------S-------------------------
----------------------------------------S-----SS----------S---------------------
-S--SSS-----------S-------------------SSSSSSSSSSSSS---S--------------------S----
SS-----S---------------------S-S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_60
----------------------------------------CGGCCACTAGACGACCATAC--------------------
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>reverse_2124
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-------------------------------------------TCTACGGATCAGGGGCCTAC-----------------
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