>input_sequence_71783
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--------------------------------------------------------ATGCAGATCTTCGTCAAGACCCTG
ACCGGGAAGACCATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGG
TACGCACCGCCATCGACTGATCTCGTCATCTCATTGGCTTGAGATCGTCTGCTCGCCGGCGGCCGGCCGGCCTTACGTAT
ACACTGTGTTGGCAATGGCCAATGGTGAAGCAGCTGTTTGCTTGTTTGCAATCGACTAACCGCGCATGCTAATGCTAAAC
TGTTTGC---TTGTTGCAGGGATCCCTCCGGACCAGCAGCGGCTCATCTTCGCGGGGAAGCAGCTGGAGGAGGGGCGCAC
CTTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTCCGCGGCGGCACCAGGGGAGGCTACC
TAAACGTGGAACCAAATCTCCTGCAGCTCGCGCTCAAGTACAACGAGAAGAAGATGGTCTGCCGCAAGTACGTGTATATA
TATAC---------------------------------------------------------------------------
-----------------------------------------CCCATGCCTGCATGAGTTCATATGATCGATCGGCCGAAT
CT-------TTGTTGTTAACCTGTGGTGGTGTGGAACAGGTGCTACGCTCGGCTTCCCCTGAGGTCCACCAACTGCCGCA
AGAAGAAGTGCGGCCACAGCAACGAGCTGAGGCCCAAGAAGAGGTTCGTCAACAAGCTTTCCAACTGA------------
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>chr1B_1_TraesCS1B01G241200
GAGAGATCCGATGATTAAGTACTAGGTTG-TTATGTGTGGCGAGTACAATTAATGTTTGTTGTCTAATTTAAGGACTCGG
ACAACATGATCTAAAAACTTACACGGCCAACCTCTTCGCGTCTAACTTC-CCATTGCAGACAAACCAACACTTATTTTAT
TTTTTGTCCTTTATTTGCCCCCTTAGTCTTAGACAAATTATTTTTA-CCTCAATTACTTGTGTTTCATCCTCATAGTAAT
TTTTGCGGACACCAAAATAGTCAGCT--CACACAAGACTTGTGACACCTCCCCTACATTTCGCTGGAAATGATATTAAAC
TAGGATTGTATTTTCACGGGAGTGCTTCAACCACCTATGTGCACTTGCGGGACATTCTCCTCCTATAGAAGCACCTCGAG
CTCATCGAACAAC---TGTTCTCGTCTTCGAGACGGGTGAGCTCGGCGCGTTCGCGGTCGACCGTGCGCTCATCCTGCAA
AGGTGAAGTTGCAAC----AAAAAAGAGCGATCTCGACTTTACCTGACCCTGTTTAGCTATTTCCACTAGCAGGCAAAGG
AT-GATCATAACGTAGTGCGTCACTCAATCCATTGATATGAATCGAGTTAACAAAGAAGAGACGATTTCATAAACTAACA
TGCGGTTGGATGGTTAGGTGGACAGAGATGGTCGTGTTAGGAGTGAGGAAAGATGCGGTGTGGGATCAGTTATCAGAGGG
GAAATCACGATCCGACAGATAATGACGGTGGTTACGCATTTAAAATTTTTTATTAAAAATAAACGTGGTTACGGTTTCCA
TTTACCCCACGCGAAAATTACGCTCCACGTCGGTGATATCCCATTGGGGCGGGTTACTTTCGTAGCGAGCGAGTTTCCTC
CCACGGTCCCACCCCAGGTTCGCTATATATACCTGAGATCGAGAATGCGATCGCCCACGACGGCCACCACCCCATTACCC
ACGACGATCA---AACAACAGAAGCCAGGGAGCGGTTGATCGATCAACCCGCCAAGATGCAGATCTTCGTCAAGACCCTG
ACCGGGAAGACCATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGG
TACGCACCGCCATCGACTGATCTCGTCATCTCATTGGCTTGAGATCGTCTGCTCGCCGGCGGCCGGCCGGCCTTACGTAT
ACACTGTGTTGGCAATGGCCAATGGTGAAGCAGCTGTTTGCTTGTTTGCAATCGACTAACCGCGCATGCTAATGCTAAAC
TGTTTGC---TTGTTGCAGGGATCCCTCCGGACCAGCAGCGGCTCATCTTCGCGGGGAAGCAGCTGGAGGAGGGGCGCAC
CTTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGTCTCCGCGGCGGCACCAGGGGAGGCTACC
TAAACGTGGAACCAAATCTCCTGCAGCTCGCGCTCAAGTACAACGAGAAGAAGATGGTCTGCCGCAAGTACGTGTATATA
TATAC---------------------------------------------------------------------------
-----------------------------------------CCCATGCCTGCATGAGTTCATATGATCGATCGGCCGAAT
CT-------TTGTTGTTAACCTGTGGTGGTGTGGAACAGGTGCTACGCTCGGCTTCCCCTGAGGTCCACCAACTGCCGCA
AGAAGAAGTGCGGCCACAGCAACGAGCTGAGGCCCAAGAAGAGGTTCGTCAACAAGCTTTCCAACTGAAGATTGAACCAG
GACGGGTGAGAGAAGCAAGAGGGAAAGGACCGTCGCTCAATGAATTGTTTGGTTTGGTTTATCAAGTTGTTTTA-TGATT
TTGAATAAAACGG-TGCTATGTTCTAGCTAGCTA----------------------------------------------
-----------------------------GTGTGAAGTCCCAAGCCATGCAATGATTACCTCAGAGTCGACGATGGATGC
ATGCATGTATTACCCACATATTCTGTGG---------------TCTTTTTGTGTGTGGGGAAATCG--TGTACGTCTAGT
GTGCACTAGTTATTGCACGTCA---TGACTCAATGAAGCACGAAAAGAAAAGAAAAAAAACACTGCATGAATCACCGCAT
AAAATCAATGATATAGAATTTAGATATGCTATAGTTAGGACGCATCTAGACATGCTTTACCAAACTG--TTTTTTATTTA
TTCTAGGGGGCTAGGGGGATAGAACTACAGCACGAGAAGGCTCAAGATCAGCAAGACAAGGTGGGCTT--TTACCCGTAG
TGCATCCTAGTATCGAAACGTTCAAAGGCTCCACATAGCAACAGCTGGCATATTAACCAGAATGGCGAATGGCATATTAA
CCACGTGATACATG--TGGTAAATAATCACAACAATTT-----AAAAAAAACAGAATGGCGAATGACATGTTGCAGCAAT
TGGGAAATTAAATGGATGTGCCAAGTCCAAACCTCAGCACAAATATCAATCCAAGATTTTGTGCGGGTACCCCT-TTTTC
A-TTACTTGCATAACAAAAGTACAAAGTTACGGACAGCTA-GAAGGAAAAGAAGAAGCGAGTTGGATTTTACTTTTTTGA
AAATGGAGGCATTGCCCCTGGCCTCTGCATCATGATGATGCATGCGGCCATCTTATTAACAATCCATAATCATCATAAAA
GTCTTACAGCTCATAAACGGAGCAGAATAAAGTATCAAAAGGAAAAATACATGTGAACCATGTCAACCGGCACAATGAAG
ATAAAAAGGATAAGCTCTCTAGACTCCTATCCTGTTATGCGAGCGCCATCCGAACCGGT
>chr1D_7
TCT------GATGATTAAGTACTAGGTTG-TTATGTGTGGCGAGTATAATTAATGTTTGTTGTCTAATTTAAGGACTCAG
ACAACATGATCTGAAAATCTACACGACCAACCTCTTTGCGTCTAACTTC-CCATTGCAGACAAACCAACACTTATTTTAT
TTTTTGTCCTTTATTTGCCCCCTTAGTCTTAGACAAATTATTTT-A-CCTCAATTACTTGTGTTTCATCCTGATCGTAAT
ATTTGCAGACACCAAAATAGTCAGCT--CACACAAGACTTGTGACACCTTCCCTACATTTCACTGGGAATGATATTAAAT
GAGGATTGTATTTTCACGGGAGTGCTTCAACCACCTATGTGCACTCGGGGGACATTCTCCTCCTATAGAAACACCTCGAG
CTCATCGAACAAC---TGTTCTCGTCTTCGAGACGGGTGAGCTCGGCGCGTTCGCGGTCGACCGTGCGCTTATCCTGCAA
AGGTGAAGTTGCAACAAAAAAAAAAGAGCGATCTCGACTTCACCTGACCCTGTTTAGCTATTTCCACTGACAGGCAAAGG
ATGGATCATAACGTAGTGCGTCACTCA-TCCATCGATATGAATCGAGTTAACAAGGAAGAGACGATC-CATGAACTAACA
TGCGGTTGGATGGTTTGGTGGGCAGAGATGATCGTGTTAGGAGTGAGGAAAGATGCGGCGTATGATCGGTTACCAGAGGG
GAAATCACGATCCAGCAGATAATGACGGTGGTTACGCATTTGAAAAGAATA---AAAAAGAAACGTGGTTACGGTTTCCA
TTTACCCCACGCGAAAATTACGCTCCACGTCGGAGATATCCCGTTGGGGCGGGTTACTTTCGTAGCGAGCGCGTTTCCTC
CCACGGTCCCACCCCAGGTTCGCTATATATACCTGAGATCGAGAATGCGATCGACCACGACGGCCACCACCCCATTACCC
ACGACGATCATCAAACGACTGAAGCGAGGGAGCGGTTGATCGATCAACCCTGCAAGATGCAGATCTTCCTCAAGACCCTG
ACCGGGAAGACGATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGG
TACGCACCGCCGTCGATCGATCTCATCATCTCATTGGCTTGAGATCGTCTGCCAGCTGGCGGCCGCCTTGC----CGTAC
ACACTGTGTTGGGCTGTTGGCGACATCGACGATGCTAAAT--------------------------TGCTAATGCTAAAC
TGTTG-TTGGTTGTTGCAGGCATCCCTCCGGACCAGCAGCGGCTCATCTTCGCGGAGAAGCAGCTGGAAGAGGGGCGCAC
CCTGGCCAACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTCCGCGGCGGCACCAGGGGAGGCTACC
TAAACGTGGAGCCAAATCTCCTGCAGCTCGCGCTCAAGTACAACGAGAAGAAGATGGTCTGCCGCAAGTACGTGTATATA
TATGACCATGCAAAGCCCATGATCAGATGAGATCTAGTACTCCCTCCGTAAATTAATATAAGAACGTTTAGGTCACTAAG
TTTACAGAGGGAGTAGTACTCTACTTAATTATGAAGCTATACCCATGCATGCATGAGTTCATATGATCGATCG----ATC
GACCGAAACTTTTTGATAACCTGTTGTGGTGTGGAACAGGTGCTACGCTCGGCTTCCCCTGAGGTCAACCAACTGCCGCA
AGAAGAAGTGCGGCCACAGCAACCAGATCAGGCCCAAGAAGAGGTTCATCAACAAGCTTTCGAACTGAAGATCGAATCGG
TAGGGGAGAGAGAAG-------GGAAGGACCGTCTGTGAATAAATTGTTTCATTCGGTTTATCAAGTTGCTTTAGTGATT
TTGAATAAAAAGGGTGATATGTTCTAGCTAGCTA----------------------------------------------
-----------------------------GTCTGAAGTTTCAAGCCATGCAAGGGTTACTTAAGAGTTGG----------
ATGCATGTATTACCCACATATTCTGTTGGTTTTTCTTTTCTTTTCCTTTTTTTTTGGAGGAAATCG--TGTATGTGTAGG
GCATAAATAGG--------------------------------------------AAAAAAAACACACGAATCTCCGCAA
AAAATCAATGGCATGAGATTTAGATATGCTATACTTGAGGCACATCTACATGTGCTTTAGCAAAACTTATTATTTTTTAT
TTCA--GGGGACTGGGGAATAGAATTACATCACGAAAAGGCTCCAGATCAGCGAGACAAGGTGGGCCTTGTTACCCATGG
TGCATCCTAGTATCGAAACCTTCAAAGGTTCCACATCCACAATGCTGGCATATTAACCAGAAAAGTGAATGACATATTAA
CCACGTGACACACACCTGGTAAACAATCCAAACAAT-T-----ACAAAAAACAGAATGGTGAATGACATGTTGCAACAAT
TGGGAAATCAAATGGATGTGCCAAGTCCATACCTCAGCACAAATATCAATCCAAGATTTTGTGCGGGTACCCCCCTTTCC
A-TTACTTGCATAAGGAAAATACGAAGTTCAGGACTTCTGA-AAGGAAAAGAAGAAGCGAGTTGGAT-------------
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>chr1A_9
--------CGATGATTAATTACTATGTTGTTTATGTGTGGCGAGTATA-----TGCTTGTTGTCTAATTTAAGGACCCAG
---------TCCGAAGACCTACACGGCCAACCTCTTCGCGTCTAACTTCTCCATTGCAGACAAACCAACATTTATTTTGT
TTTGTGTCCTTTATTCGCTGCCTTAGTCTTAGAAAAATTATTTCACCCCTCAATTACTTGTG----ATCCTCATCATAAT
TCTTGCAGACACCAAAATAGTCAGCTCACATACAAGACTTGTGACACCTCCCCTACATTTGGTTGGGAATGATATTAAAC
TAGGATTGTATTTTCACGAGAGTGCTTCAACCACCCATGTGCACTTGCGGGACATCCTCCTCCTCTAGAAGCGCCTCGAG
CTCATCGAACAACTGTTGTTCTCGTCTTTGAGACGGGTGAGCTCGGTGCGTTCATGGTCGACTGTGCGCTCATCCTCCAA
AGGTGAAGTTGCAACAT---------------------------------------------------------------
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---------------------------GTTGGTTCGCATTTCAAAAGAATA---AAAAATAAACGTGGTTACGGTTTCCA
TTTACCCCACGCGAAAATTACGCTCCACGTCGGAGATGTCCCGTTGGGGTGGGTTACTTTCGTAGCGAGCGGGTTTCCT-
-----------------------------TACCTGAGATCGAGAATGCGATCGCCCACGACGACCACCACCCCATTACCC
CACGACG--ATCAAACAACTGAAGCGAGGGAGCGGTTGATCGTTCAGCCCGCCAAGATGCAGATCTTCGTCAAGACCCTG
ACCGGGAAGACGATCACGCTCGAGGTCGAGAGCAGCGACACCATCGACAACGTCAAGGCCAAGATTCAGGACAAGGAAGG
TACGCACCGCCGTCGACTGATC---TCATCTTCTTGGCTCGAGATCGTCTGCTCGCCGGCGGCCGCCTTGC----CGTAC
ACACTGTGTTGGGCTGTTGGCGACATCGACGATGCTAAAT--------------------------TGCTAATGCTAAAC
TGTTGGTTGGTTGTTGCAGGGATCCCTCCGGACCAGCAGCGGCTCATCTTCGCGGGGAAGCAGCTGGAGGAGGGGCGCAC
CCTGGCCGACTACAACATCCAGAAGGAGTCGACGCTGCACCTGGTGCTCCGCCTCCGCGGCAGTACCAGGGGAGGCTACC
TAAACGTGGAGCCCAATCTCCTGCAGCTGGCGCTCAAGTACAACGAGAAGAAGATGGTCTGCCGCAAGTACGTGTACATA
TATAC---------------------------------------------------------------------------
-----------------------------------------CCCATGCATGCATGAGTTCATATGATCGACCG----AAT
CT-------TTGTTGTTAACCTGTGGTGGTGTGGCACAGGTGCTACGCTCGGCTTCCCCTGAGGTCCACCAACTGCCGTA
AGAAGAAGTGCGGCCACAGCAACCAGATCAGGCCCAAGAAGAGGTTCGTCAACAAGCTTTCCAACTGAAGATCGAATCGG
GACGGGAGGGATAAGCAAGAGGGGAAGGACCATCGCTGAATAGATTGTTTGGTTTGGTTTATCAAGTTGTTTTCATGATT
TTGAATAAAGC-GGTGCTATGTTCTAGGTGACTCAATCAAAGATTGTTTGGTTTGGCTTATCAAGTTGTTTTCATGATAT
CACTAGTACTAATTTCATGATTGGTGCGGGTGTGAAGTTCCAAGCCATGCAATGGTTACTTCAGAGTCGACGATGCATGC
ATGCATGTATTACCCACATATTCTGTTGGTTTCTCTTTTTCTTCTCTTTTATGCGGGGAGATCATGAATGTATGTCTATG
GTGCCCTAGTTATTGCATATCTAGGTGACTCAATCAAGCATAAAAAGAAAAAAAAAAACCCG---CACCAATCTCCGTAT
AAAATCAGGTAACATAGA-------------------------ATCTAGATGTGCTTTAGCAAAACAGTTTTTTTTATTA
TTCTAGGAGACTAGGGGAATAGAATTACAGCACCAGAAGGCTCAAGATCAGCAAGACAAGGTGGGCCTTGTTACCCGTAG
CATT-----------------------GCTCCATGTAGCAGCAGCTGGCATATTAACCTGAACGGTGAATGACATATTAA
CCACGTGACACATG--TAGTAAACAATCCAAAGAATACAAAAAAAAAAAAACAGAATGGCGAATGACATGTTGCAACAAT
TGGGAAATTAAATGGATGTGCCAGGTCCAAACCTCAGCACAAATACCAATCCAAGATTTTGTGCGGGTACCCCC-TTTCC
ATTTACTTGCATAACGAAA-TACAAAGTTACGGACAGCTCTGAAGGAAAAGAAGAATTGAGTTGGAT-------------
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>SNPs
SSSSSSSS--------------------------------------S-------------------------------S-
------------S-----S-------------------------------------------------------------
--------------------------------------------S-----------------------------S-----
------S-----------------------------------------------------------S-------------
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----------------------------------------S---------------------------SS----------
---------------------------S-----S--------------------S-----------SS---S--------
---------------S-----S--------S---------------------------S--SS----S----S-------
-------------SS--------------------------S---SSSS-SSSS--------------------------
---------------------------------S--------S----------------------------S--------
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-------------------S-----S------------------------------------------------------
-----------S--------------------------------------------------------------------
-----------S------------S----------------------------------------S-SS--SSSS----S
------------SSSSSSSSSSSSS-SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------
----S-S-------------------------------------------------------------------------
-S-------------------------------------------------S----------------------------
----------S---------------------------------------------------------------------
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------------------------------------------------S------------------------SSSS---
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-----------------------S--S-S-------------------------------------------S---S-S-
------S----------------S-------------S---S--------------------------------------
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--------------------------------------S---------------S----S---------------S----
--------------------------S------------------S----S----S----------------S------S
-----------------SS--S------------S-----SS---------S----------SSS--S-----S------
-----------S--SSS----------------S--SS-S-S--------SS-------S----SSS--------S----
-----------------S------S-----------------------------------------S-------------
-------------------S------------------------------------------S--S-----S--------
--------S--------------S----SS------S--------------------------------------S----
-------------------------------------------------------------------------S----S-
---------------S---S-------------------S---------------------------SSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_699
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---------------------------------------GGAGTGAGGAAAGATGCGGT---------------------
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>reverse_1784
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-----------------------GAGCTGAGGCCCAAGAAGAG-------------------------------------
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>forward_1241
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---------------------ATGGTGAAGCAGCTGTTTGC---------------------------------------
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>reverse_2858
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---------------------------------------------------------CCATGTCAACCGGCACAATG---
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