>input_sequence_71781
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------------------------------------------------ATGCTAACGCCGAATAACACTGCAGCGATGAC
CTACAACAAGAGAAATTTTCGAGCTCACCCCTCAGCACAAACAGTGAAAAATTGTTATACCACCAAAACTAATTTCGACA
CATCCACATGTAAAGACTCACCACCAGTGCAACTCTTCTGACGGCCGAGTCTTTCGGGGTCACGCTGGCTTCCAGCGCAG
GCTTCACGCTTCCATCGTCGACCGTTGCACGTGGAGTGGTGCTCTTCCTCTCCATCTCTGCAACATATGTCCACAAGAGG
AAGCTCATAATTAAGCTCGCAACAAATATGAGCAGTGCTTCAGTGGATAGCTCTGGGAGTGGTCACTGTACAATCAAATT
TGACCTGGGATTCATGTTCAGAAATCATAATAAACTCTCTATAAGCTAACAAAAATATCCTTAGGTTCTA-----TGAGT
TCTCAAGCAATTATAATTAAGCTCATGGTCATGGAGCTTCAAAGATTCCAACCAAGCCAAGCGCAGTGCCCGGAGGACGC
TTGGAGCTAGCAGAGCGGGGGTGGGCGGCTTACCGGAGCCGACGGATAGACCGTCCTCCCGGTCGGCCTCCGTGGCGCGC
CTCCCCGGCTTCTTCCTCCCCTTCTTCCCGCCGTCGCCGGGGCTCCGACGCGACGCGGCGACCACCGTGAGGAGCCGCCC
CGGCGCCGGACGAAGCTGA-------------------------------------------------------------
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>chr1B_1_TraesCS1B01G071900
ACAGTGGAACCCGATCCTTTTCTGGAACCGTATGGAAAAAAAAAGTGCCAGCAAGAACTTCTCATAAAGGAAGTTGCCAA
TGAATAACAGCCAAAGTAACTATGTATACGAAAGAAAAATAAAATATGAAAAGCATGACATCA-TTTTTTAACGCGGG-A
GAACAGTTTTACCTTGTAGGAAGAGAATAGCAGGATCGCAGCAAAAAATAAGTTCACCGCTTCAAAACTCTACAGAACAT
GAGGAACTTATAAGCATTATTACAATCGGATAAAAATAATAATGGAAACATGGGAGA-CAACCAACCTGAATGGTAGCTA
CTCCTAGGATGATCAACACTGCACGAAAGATCACTGCTCCGGCAATACCATAAGAAAGCACCCGATTCTTGTTTCCAATG
TCAAAGAAAGAGTGAGCAGAAAATCACAAAGTATATTAGGACTTTGCCTATCACATTAGCTATTAACTGTACCTGGTACT
CCAGTGGCACTTTAAAATACTTGAAAACCAGAATGAAAACAAAGAGATTGTCCACCGACAAACTCTGTTCCAACAAATAG
CTGTTACATAACAGAAC--GATCACATTGTTATACCTCAAATATAGAAGAAATTAAGGAGAGCTTTTCTAAGAAATCATG
TAAAGATATGCAAGGG---AACTAAGCAAAGTAGCAAACTAACTTGCACAACCCAAAGAGTGAGCTTACACAGTACACTG
ATTGTTACTTTTACTAACCCTCATCCTATTTGTTAGTAGAACATTTTCCTACGCGGTTATGTCTGAAACACTAGCCATGC
ATTCATTAAAGCATCTAGTGAAGCTAGTATGCAATGATGCATTCGATTCTCGAATGGGCTCCTATATGGTCTTGAAAATT
CTAATGCAGAAAGGAACCACACCTCCAACAGTTGGGTAAAACAGCCTCAATGTTAAAGATTAGTCGAGATGCATAGCACA
CACCCTGCAAAATATTCCGATGCCTTCTCAACCCCATCCTTCAAGGCGATGCTAACGCCGAATAACACTGCAGCGATGAC
CTACAACAAGAGAAATTTTCGAGCTCACCCCTCAGCACAAACAGTGAAAAATTGTTATACCACCAAAACTAATTTCGACA
CATCCACATGTAAAGACTCACCACCAGTGCAACTCTTCTGACGGCCGAGTCTTTCGGGGTCACGCTGGCTTCCAGCGCAG
GCTTCACGCTTCCATCGTCGACCGTTGCACGTGGAGTGGTGCTCTTCCTCTCCATCTCTGCAACATATGTCCACAAGAGG
AAGCTCATAATTAAGCTCGCAACAAATATGAGCAGTGCTTCAGTGGATAGCTCTGGGAGTGGTCACTGTACAATCAAATT
TGACCTGGGATTCATGTTCAGAAATCATAATAAACTCTCTATAAGCTAACAAAAATATCCTTAGGTTCTA-----TGAGT
TCTCAAGCAATTATAATTAAGCTCATGGTCATGGAGCTTCAAAGATTCCAACCAAGCCAAGCGCAGTGCCCGGAGGACGC
TTGGAGCTAGCAGAGCGGGGGTGGGCGGCTTACCGGAGCCGACGGATAGACCGTCCTCCCGGTCGGCCTCCGTGGCGCGC
CTCCCCGGCTTCTTCCTCCCCTTCTTCCCGCCGTCGCCGGGGCTCCGACGCGACGCGGCGACCACCGTGAGGAGCCGCCC
CGGCGCCGGACGAAGCTGAACCGCGTGCAGCCACGGGGAGGAGAGGCGTGGAGGAACGAGCCGCGCGGGGGCGGCGGCGG
CGACCATGGCGGCCATCGCCAGCGACGAGGTCGGGGAGAGGCCGTGGGGCGGGCAGCGGCAGTCGAGCGTACGGTCTCGC
GCCTCAGCCACAGCGGGTGGGAGAGCGAGCCGAGGAAACGGCAGCACACGTGTGACTGTGTGAGTC--GCTGCCCGACGG
GCCACCGGCCCACTAAAAGCCCAACCAAGATCCACGGCCCGAAGCCCAACGCGAACCCGAAA-GTGAGCCCGGTCTCGGC
CCGGTTAGGCTCTGCTACTAATTCCTCGACACGTGTCGCTGCTTCTCCATCCTCCTCCTCATTCGGTTAGTGTGCT----
-CGAGGGTTCCTCTTCCTCCACTGCGCCGCCGCGAGCCTCCCGACCCCTCGGTCGCGATTCTGCGAAATCCGGCCGGATT
CCTCCACGATCCGAGGTAATTCGTTGCGGATTATTGCCGCTGGAGCCGCCGATTTTGTCGATCTCGGTCGATTTCTCGCT
GTAATCGTGCTTGCTTCGTGAGTTTCCTGATGTGAATTCCGGGGTTGGTCAGACCAGATGGGAGAAGGAGATCCCGAT--
-GGTGGCTGCGTCGTCGGAGCGACAGCGACCTCGACCTCGGCGGCGT---------------CGGCGGCCGCCCCTGTGA
GGGACATCAGGCGGTACAAGTGCGAGTTCTGCGACGTCGTGCGCTCGAAGAAGCGGCTGATCCGAGACCACGTCCTCGAA
CACCATAAGGTGGGGT---------GGCTTCTCCCCGGTCCAGGACGTGTGTTATCTGTTCTGTTTTCTTATTAATAAAG
CACCCGTGCTACTGATTTCTGCGGGAGCTGTGAATTGTGGGTGAGCTCAAGTGTTGCCGCTGTGTGCTGTAGGACGAAGT
GGATGGTCTGGATGAGTACAACCTAGGTGGTGGTGGCGGCAGTGCGCCGCCGGGCAAGGAGATCGGCCATGGTTGCAAGG
AGTGCGGAGCGAGG
>chr1A_3
--AGTGGAACCCGATCCTTTTCTGGGATTGTATGGAAAAAAAAAGTGCTAGCAAGATCTTCTCATAAAGGAAGTTGCCAA
TGAATAACAGCAAAAGTAAATATGTAAGCGAAAGAAAAATAAAATATGAAAAGCATGACCTCCTTTTTTTAACACAGG-A
GAACAGTTTTACCTTGTAGGAAGAGAATAGCAGGATCGCAGCAAAAAATAAATTCACCGCTTCAAAACTCTACAGAACAT
GAGGAACTTATAAGCATTATTACAATCGGATAAAAATAATAATGGCAACATGGGAGAACAACCAACCTGAATGGTAGCTA
CTCCTAGGATGATCAACACTGCACGGAAGATCACTGCTCCGGCAATACCATAAGAAAGCACCCGATTCTTGTTTCCAATG
TCACAGAAAGAGTGAGCAGAAAATCAAAAAGTATATTAGGACTTTGCCTATCACATTAGCTATTAACTGTACCTGGTACT
CCAGTGGCACTTTAAAATACTTGAAGACCAGAATGAAAACAAAGAGATTGTCCACCGACAAACTCTGTTCCAACAAATAG
CTGTTACATAACAGAACCTGATCACATTGCTATACCTCGAATATAGAAGAAATTAAGGAGAGCTTTTGTAAGAAATCATG
TAAAGATATGCAAGGGCGCAACTAAGCAAAGTAGCAAACTAACTTGCACAACCCAAAGTGTGAGCTTACACAGTGCACTG
ATTGTTACTTTTACTAACCCTCATCCTATTTGTTAGTAG-ACATTTTCCTACACGGTTATGTCTGAAACA-TAGCCATGC
TTTCATTCAAGCATCTAGTGAAGCTAGTATGCAATGATGCATTCGATTCTCGAATGGGCTCCTATATGGTCTTGAAAATT
CTAATGCAAAAAGGAACCACACCTCCAACAGTTGC-TAAAACAGCATCAATGTTAAAGATTAGTCGAGATGCATAGCACA
CACCCTGCAAAATATTCCGATGCCTTCTCAACCCCATCCTTCAAGGCGATGCTAACGCCGAATAAGACTGCAGCGATGAC
CTGCAACAAGAGAAATTTTCGAGCTCACCTCTCAGCACAAACAGTGAAATATTGTTATACCACCAAAACTAATTTCGACA
CATCCACATGTAAAGACTCACCACCAGTGCAACTCTTCTGATGGCCGAGTCTTTCGGGGTCACGCTGGCTTCCAGCGCAG
GCTTCACGCTTCCATCGTCGACCGTTGCACGCGGCGTGGAACTCTTCTTCTCCACCTCTGCAACATATGTCCAAAAGAGG
AAGCTCATGATTAAGCTCACAACAAATATGACCAGTGCTTCAGTGGATAGCTCTGGG--TGGTCACTGTACAATCAAAAT
TGACCTGGAATTCATGTTGAGAAACCATCACAGAA--TCTCTAGGCTAACAAAAATATCCTTAGGCTCTGAGTGCTGAGT
TCTCAAGCAATTCTAATTAAGCTCATGG------AGCTTCAAAGATTCCAACCAAGCTAAGCGCAGTGCCCGGAGGAAGC
TTGGAGCTAGCAGAGCGGGGGCGGGCGGCTTACCGGAGCCGACGGAGAGGCCGTCCTCCTGGTCGGCCTCCGTGGCGCGC
CTCCCCCGCTTCTTCCTGCCCCTCTTCCCGCCGTCGCCGGGGCTCCGACGCGACGCCGCGACCACCGTGAGGAGCCGCCC
CGGCGCCGGACGAAGCTGAACCACGTGCAGCCACGGGGCGGAGAGGCGCGGAGGGACGAGCCGCGCGGGGGCGGCGGCGG
CGACCATGGCGGCCATCGCCGGCGACGAGGTCGGGGAGAGGCCGGGGGGCGTGCAGCGGCAGT-CAGCGTACGGTCTCGC
GCCTCAGCCACAGCGGGTGGGAGAGCGAGCCGAGGAAACGGCAGCACACGTTTTTTTTTTGAGCTGCTGCTGCCCGGCGG
GCCAGCAGCCCACTAAAAGCCCAGG-AAGACTCACGGCCCGCAGCCCAGCACGAACCCGAAAAGTGAGCCCGGTCTCGGC
CCGGTTAGGCTCTGATACTAATTCCTCGACACGTGTCGCTGGCTCTCCATCCTCCTCCTCATTCGGGTAGTGTGCT----
-CGAGGGTTCCTCTTCCTCCACTGCGCCGCCGCGAGCCTCCCGACCCCTCCGTCGCGATTCTGCGAAATCCGGC-GGGTT
CCTACGCGATCCGAGGTAATTCGACGGCGATTGGTGCCGCTGGAGCCGCCGATTTTGTCGATCTCGGTCGGTTTCTCGCT
GTAATCGTTGCTGCTTCGTGAATTTCCTGATGCGAGTTCTGCGACTGGTCAGGCCAGATGGGAGAAGGAGATCCGGAG--
-GGCA---GCGTCGTCGGAGCGACGGAGACCTCGACCTCGCCGGCGGCC------------GCGGCGGCCGCCCCTGTGA
GGGACATCAGGCGGTACAAGTGCGAGTTCTGCGACGTCGTGCGCTCGAAGAAGCGGCTGATCCGAGACCACGTCCTCGAG
CACCATAAGGTCTAGGACGTC---------------------------GTATTGTCTGTTCTTGTGAA----------AG
CATCCGCGCTACTGATTTCTGCGGGAACTGTGATTTGTGGGTGAGCTGAAGTGTTGCCGCTGTGTGCTGTAGGACGAAGT
GGATGGTCTGAATGAGTACAACGTAGGTGGTGGTGGCGGCAGTGCGCCGCCGGGCAAGGAGATCGGCCATGATTGCAAGG
AGTGCGGCGCGAGG
>chr1D_3
--AGTGGAACCCGATCCTTTTCTGTGATTGTATGGAAAAAAAAAGTGCTAGCAAGAACTTCTCATAAAGGAAGTTGCCAA
TGAATAACAGCAAAAGTAACTATGTATGCGAAAGAAAAATAAAATATGAAAAGCATGACCCCTTTTTTTTAACATGGGAA
GAACAGTTTTACCTTGTACGAAGAGAATAGCAGGATCGCAGCAAAAAATAAATTCACTGCTTCAAAACTCTACAGAACAT
GAGGAACTTATAAGCATTACTACAATTGGATAAAAATAATAATGGCAACATGGGAGAACAACCAACCTGAATGGTAGCTA
CTCCTAGAATGATCAACACTGCACGAAAGATCACTGCTCCGGCAATACCATAAGAAAGCACCCGATTCTTGTTTCCAATG
TCACAGAAAGAGTGAGCAGAAAATCAAAAAGTATATTAGGACTTTGCCTATCACATTAGCTATTAACTGTACCTGGTACT
CCAGTGGCACTTTAAAATACTTGAAGACCAGAATAAAAACAAAGAGATTGTCCACCGACAAACTCTGTTCCAACAAATAG
CTGTTACATAACAGAACCTGATCACATTGTTATACCTCGAATATAGAAGAAATTAAGGAGTGCTTTTGTAAGAAATCATG
TAAAGATATGCAAAGTCGCAACTAAGCAAAGTAGCAAACTAACTTGCACAACCCAAAGAGTGAGCTTACACAGCGTGCTG
TTTGTTACTTTAACTAACCCTCATCCTATTTGTTAGTAGAACATTTTCCTACACGGTTATGTCTGAAACA-TAGCCATGC
ATTCATTCAAGCATCTAGTGAAGCTAGTACGCAATGATGCATTCGATTCTCGAATGGGCTCCTATATGGTCTTGAAAATT
CTAATGCGGAAAGGAACCACACCTCCAACAGTTGGGTAAAACAGCCTCAATGTTAAAGATTAGTCGAGATGTATAGCACA
CACCCTGCAAAATATTCCGATGCCTTCTCGACCCCATCCTTCAAGGCGATGCTAACGCCGAATAATACTGCAGCGATGAC
CTGAAACAAGAGAAATTTTCGAGCTCCCCTTTCAGCACAAACAGTGAAGTATTACTAA------------AATTTCGCCA
CATGCACATGTAAAGACTCACCACCAATGCAACTCTTCTGATGGCAGAGTCTTTCGGGGTCATGCTGGCTTCCAGCGCAG
GCTTCACGCTTCCATCGTTGACCGTTGCACGCGGGGTGGAACTCTTCGTCTCCATCTCTGCAGCATATGTCCACAAGAGG
AAGCTCATAATTAAGCTCACAACAAATATGAGCAGTGCTTCAGTGGATAGCTCTGGG--TGGTCACTGTACAATCAAAAT
TGACCTGGGATTCATGTTCAGAAATCATAATAAACTCTCTATAAGCTAACAAAAATATCCTTAGGTTCTA-----TGAGT
TGTCAAGCAACTCTAATTAAGCTCATGG------GGCTTCACAGTTTCCACCGAACTCTAATTAA--GCGCGGAGGACGC
TTGGAGCTACCAGGGTGGGGGCGGGCGGCTTACCGGAGCCTACGGAGAGGCCGTCCTCCTGGTCGGCCTCCGTGGCGCGC
CTCCCCCGCTTCTTCCTGCCCCTCTTCCCGCCGTCGCCGGGGCTCCGACGCGACGCGGCGACCACCGTGAGGAGCCGCCC
CGGCGCCGGACGAAGCTGAACCGCGTGCAGCCACGGGGAAGAGAGGCGCGGAGGAACGAGCCGCGCGGGGGCGGCGGCGG
CGACCATGGCGGCCATCGCCGGCGACGAGGTCGGGGAGAGGCCGGGGGGCGGGCAGCGGCAGTCCAGCGTACGGTCTCGC
GCCTCAGCCACAGCGGGTGGGAGAACGAGCCGAGGAAACGGCAGCACACGTTTTTTTTTT-AGCTGCTGCTGCCCGGCGG
GCCAGCAGCCCACTAAAAGCCCAGG-AAGACCCACAGCCCGCAGCCCAGCACGAACCCGAAAAGTGAGCCCGGTCTCGGC
CCGATTAGGCTCTGCTACTAATTCCTCGACACGTGTCGCTGGCTCTCCATCCTCCTCCTCATTCGGGTAGTGTGCTGTGC
TCGAGGGTTCCTCTTCCTCCACCGCGCCGCCGCGAGCCTCCCGACCCCTCGGTCGCGATTCTGCGAAATCCGGC-GGGTT
CCTCCACGATCCGAGGTAATTCGCCGGCGACTGGCGCCGCTGGAGCCGCCGATTTTGTCGATCTTGGTCGATTTCTCGCT
GTAATCGTGCTTGCTTCGTGAATTTCCTGATGCGAGTTCTGCGACTGGTCAGGCCAGATGGGAGAAGGAGATCCCGACAG
TGGCG---GCGTCGTCGGAGCGACCTCGGCCTCGACCTCGACCTCGACCTCGCCGCCGCCGGCGGCGGCCGCCCCTGTGA
GGGACATCAGGCGGTACAAGTGCGAGTTCTGCGACGTCGTGCGTTCGAAGAAGCGGCTGATCCGAGACCACGTCCTCGAA
CACCATAAGGTGGGGTCGCGCTCCTGGCTTCTCCCTGGTCCAGGACGTGTGTTATCTGTTCTGTTTTCTTATTAATAGAG
CACCCGTGCTACTGATTTCTGCGGGAGCTGTGAATTGTGGGTGAGCTGAAGTGTTACCGCTGTGTGCTGTAGGACGAAGT
GGATGGTCTGGATGAGTACAACGTAGGTGGTGGTGGCGGCAGTGCGCCGCCGGGCAAGGAGATCGGCCATGATTGCAAGG
AGTGCGGCGCGAGG
>SNPs
SS-----------------------S-SS-------------------S-------------------------------
-----------S---------------S-------------------------------S--S----------S------
---------------------------------------------------S----------------------------
---------------------------------------------S----------------------------------
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---S----------------------S-----------------------------------------------------
-------------------------S------------------------------------------------------
--------------------------------------S----------------------------S------------
--------------------------------------------------------------------------S-----
----------------------------------------------------S-----------------S---------
-------S------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------S--------------
--S--------------------------S-------------------S------------------------------
-----------------------------------------S--------------------------------------
-------------------------------S--S----SS------S--------------------------------
------------------S--------------------------------------SS-------------------S-
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------------S---------------SSSSSS----------------------------------------------
---------------------S------------------------S--S---------S--------------------
------S----------S---S----------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------S-----------------------S-------------------S---------------
---------------------------------------------------S-SSS-S-SSSSS-S----------S---
----S-S----------------SSS----S----------S------S-S-----------------------------
-----------------------------------------SS-----------------------S-------------
--------------------------------------------------------------------------S--S--
-----------------------SS-SS----SS----------------------------------------------
---------------------S----------S--S---S-S-SS-------S------------------------S--
---S-SSS----------------S---------------S-----S---------------------------------
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-----------------------------------S-----------------------------------------S--
-----------------------------------------------S--------------------------------
----------------------S------------------------------------------------S--------
-------S------
>forward_29
--------ACCCGATCCTTTTCTGGAACC---------------------------------------------------
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>reverse_1026
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-----------------------------------------------------------------CACTGCAGCGATGAC
CTACA---------------------------------------------------------------------------
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>forward_791
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--------------------------------------------------ACGCGGTTATGTCTGAAACAC---------
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>reverse_2273
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--------------------------------TGAATTCCGGGGTTGGTCAG----------------------------
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