>input_sequence_71753
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------------------------------ATGGCCCACCAGCCGGACACAATGATGGA-TACGCCGTCAGTCGACCGCA
CCACGGAACAGAAATTCGGTGTCGCGAATCAGAAATTTGTCGACGATGTGAGCCGGTTCCGAGGAGATTCTGGACTAACC
GAGGCACCTACTTCCATTCAATGCAAATGCATCTTCCCGTTGGAGGCAGCAATCCCCCCTCC-------CCAATCTTCTT
AATCCCCTCCACCTAGTCGATTCCTCACCCAGATCTGCAGCTACA-TCCTATCCAATCCGAGCCATTGCCAGCAACATCT
CCTTCCCAACCATGTCCGCTTCATCGTCATCTGTAAGGTTAGGATGGGATCTTGCCCCTCGTTCCTTGTACATAGTGCGG
CGGGCAGGTCTACACCTGGATTGCTCGATCTGGAGTGAACGGTGGGCATCGCTTCTACAAGTGTGTCAACAAGGATGTAA
GTTATCTACCCAAAACTGGAGATGCTGGTTACCTATTCTTAAATGTTTATACTGATTTATGCTTGGGATCTCTGATTGCA
GAGGTGTGGATACATGATATCTTCTGATTGCAGATTGTCCAGCTGTCCTCGTGCCCAGCTGCTGGCTAACCAGCTGGTTG
CATATTGCCAAGTTGTCCCCGCGCATCTCCCGCTGGCAGCTTACTTGCACCGACGAGTTATACCTGGCGAACCAATCGAG
CAATGA--------------------------------------------------------------------------
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>chr6A_1_TraesCS6A01G182700
TAAAATCCTTGTCATGTCAGCGGTCCACTGCTCAGCGACAATGGTAACAAGTGTGTTCGGGGTCACCGCCGCAGGGTTCA
CAGACTCCCCATCAGCCGGCTTCGGGCGGGTAGCGTCCACAAAGGGAGCCCCGTTGTCGCCCCCACCAGCGTCCAGGTTT
ACGGCAAACATCTCCGGGGTGATCACCATAGGTGGCACTGCCATTGCCGCTGCACTCGTCGTCTTCCACGGTCGCCGGGC
CGGAAGGGACACTCGATCTGGTGGATCACAGGGCTTGAGGTGTGCTAGGGCGGTCACCCCATGG----------------
-----------------------------------------------------ATCGATGAGTATTCACCAGCCGTCCCG
TTATTATTCTTGGGGGGTAGACTAGGATTGGTGGTGTATGTGGACTCCCGCGGTTGTGTGAGAACGGGATTTGCCTTAGA
CTCCTTTGCGATCTGATCATCAACATGGCCGCCAAGAACACGAGGATCCAGCGGTGCGGGGGCGGACGAGGCCGCAACAA
GTCCATAGTACGCCATTGCGGCGCACATGGAAACAGCGCCAGCGGCCGCGAGGCCAGGGCCAGGCGGCGGCGGCGGCGGT
GGCGGGGGCGTCGCCCCTGAGTCGCCAAACCCTAACATATCGCAGAAAGCCGTGCTATTTGACGATCTATTATACATACA
TGCATAATTGCCATGAGTTAGATCTTGGATCCACCTACGATGTTAGAAGTTGACCATAGTGACTGTTTTCAACATTTTTG
CAAAGCCTATGTGTTAAAGCCGAATAGATGAAAGGTACACTTTGTTCTTGGACTGCAAGGAAATCTTGCTAAAGGTGGTG
GCAAGGCAATATATTAGTTCTCAATTTCTAAAAAGAGTGTGCAAGGAATAACATATACAATGCGAAAGTGCTAATGTGAT
CACGAGCTGAGTGGT-CTCGTTATCTGTACCACATGCGTCTCTCGTGATGCGCGGAGGTGGTTCTGTCTTTCCATCTGGA
ATCTCCCGTCCATAATTTCTATTATGGCCCATGGCCCACCAGCCGGACACAATGATGGA-TACGCCGTCAGTCGACCGCA
CCACGGAACAGAAATTCGGTGTCGCGAATCAGAAATTTGTCGACGATGTGAGCCGGTTCCGAGGAGATTCTGGACTAACC
GAGGCACCTACTTCCATTCAATGCAAATGCATCTTCCCGTTGGAGGCAGCAATCCCCCCTCC-------CCAATCTTCTT
AATCCCCTCCACCTAGTCGATTCCTCACCCAGATCTGCAGCTACA-TCCTATCCAATCCGAGCCATTGCCAGCAACATCT
CCTTCCCAACCATGTCCGCTTCATCGTCATCTGTAAGGTTAGGATGGGATCTTGCCCCTCGTTCCTTGTACATAGTGCGG
CGGGCAGGTCTACACCTGGATTGCTCGATCTGGAGTGAACGGTGGGCATCGCTTCTACAAGTGTGTCAACAAGGATGTAA
GTTATCTACCCAAAACTGGAGATGCTGGTTACCTATTCTTAAATGTTTATACTGATTTATGCTTGGGATCTCTGATTGCA
GAGGTGTGGATACATGATATCTTCTGATTGCAGATTGTCCAGCTGTCCTCGTGCCCAGCTGCTGGCTAACCAGCTGGTTG
CATATTGCCAAGTTGTCCCCGCGCATCTCCCGCTGGCAGCTTACTTGCACCGACGAGTTATACCTGGCGAACCAATCGAG
CAATGAAAGCGGGGAGGGGAGATGGCGACATATGTCCGAGCGGAGCAGCTGCCATGGAAGGGGAAGGATCGGGCGTACCA
GGCAGGTCTTCATGGCATGCACAATGATTGATAAGATAGTCTTATCTTAAGTCTTGCACGTAATTTAGAGATGACAAAAG
GAAAAGTCTACAATGGGTCATCTCTTAGCCTTATCTTCAATAACTAGCCATTCCTAAAAATGTGATGAGACATATTGTGC
TAAGAGATCATCTCTTTGTCTTCTCTTAAATAAGAGAGACAAGCCTTTTCTTATGAGTTCTCTCTCCTCCACCTCATCGT
TTATCCTACGTGACACTTCTAAGATAGCACCATTGTACATGCTCTCGGGCTGACACGTCACGTGTGATTGCACTTGCGCT
CACCAGTGTGGTTGGTACAGTCATAATGTCGTGTCAGCCCTTGTTTTGCCATGGACTGAACCACCAGAGTATATATGAAC
CACAACACACTTGTACATTACATGAATCATACGTTACGACACTGTTCACTGAAACATTTTAATCAACCATCGCCGAGTCA
TGCATAAGCAATCAATAAATAAATAGTTTCTCCCCCAGTCCAACTCCTGCATAAGATGATCACCATACAGACACCCCAAG
ACAAAGCAA--------------------GGCAAGTTGACATGCGGATATTCTTCAGACAAGTTCATCTTATTCTGAAAG
AACACAACTCATAAGGATTCCGGATACATCACAAAATAAAAATACAGTACTCATTGTAGCTCAACATAACACAACGAGA-
-------TCAGCTCTTGAGCCTGAGCTCGGCCACTTTGTGGTAGCTGTTCCTATGATGCCCTTCAACACCACAATTCTTG
CATCTTCTAGGCTTTCGAGGCTGTTTTGGCACGTCCCCGCGATCAGGACACGTTGTTCACTTATGTCCCTCTCGTCTGTA
TATCATAGAAAATCTTGTTCTCTTACTGAGACCTTCGTGTGGCGCTTTCTCTCGACTTGTCGTATGCCTACCCA
>chr6A_1
TAAAATCCTTGTCATGTCAGCGGTCCACTGCTCAGCGACAATGGTAACAAGTGTGTTCGGGGTCACCGCCGCAGGGTTCA
CAGACTCCCCATCAGCCGGCTTCGGGCGGGTAGCGTCCACAAAGGGAGCCCCGTTGTCGCCCCCACCAGCGTCCAGGTTT
ACGGCAAACATCTCCGGGGTGATCACCATAGGTGGCACTGCCATTGCCGCTGCACTCGTCGTCTTCCACGGTCGCCGGGC
CGGAAAGGACACTCGATCTGGTGGATCACAGGGCTTGAGGTGTGCTAGGGCGGTCACCCCATGG----------------
-----------------------------------------------------ATCGATGAGTATTCACCAGCCGTCCCG
TTATTATTCTTGGGGGGTAGACTAGGATTGGTGGTGTATGTGGACTCCCGCGGTTGTGTGAGAACGGGATTTGCCTTAGA
CTCCTTTGCGATCTGATCATCAACATGGCTGCCAAGAACACGAGGATCCAGCAGTGCGGGGGCGGACGAGGCCGCAATAG
GTCCATAGTACGCCATTGCGGCGCACATGGAAACAGCGCCAGCGGCCGCGAGGCCAGGGCCAGGCGGCGGCGGCGGCGGT
GGTGGGGGCGTCGCCCCTGAGTCGCCAAACCCTAACATATCGC-------------------------------------
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>chr3D_1
TAAAATCCTTGCCATGTCAGCAGTCCACTGCTCAGCGACAATGGTAACAAGTGTGTTCGGGGTCACCGCCGCAGGGTTCA
CAGACTCCCCATCAGCCGGCTTCGGGCGGGTAGCGTCCACAAAGGGAGCCCCGTTGTCGCCCCCATCAGCATCCAGGTCT
ACGACAAACATCTCCGGGGTGATCACCATAGGTGGCACTGCCATTGCCGCTGCACTCGTCGTCTTCCACGGTCGCCGGGC
CAGAAGGGACACTCGATCTGGTGGATCACATGGCTTGAGGTGTGCTAGGGCGGTCACCCCATGGGCGGGCCAGAAGGGAC
ACTCGATCTGGTGGATCACAGGGCTTGAGGTGTGCTAGGGCGGTCACCCATGGATCGATGAGTATTCACTAGCCGTCCCG
TTATTATTCTTGTGGGGTAGACTAGGATTGGTGGTGTATGTGGACTCCCGCGGTTGTGCGAGAACGGGATTTGCCTTAGA
CTCCTTTGCAATATGAACATCAACATGGCCGCCAAGAACACGAGGATCCAGCGGTGCGGGGACGGACGAGGCCGCAACAG
GTCCATAGTACGCCATGGCGGCGCACATGGAAACAGCGCCAGCAGCCGCGAGGCCAGGGCCAGGCGGCGGTGGC------
---GGGGGCGTCGCCCCTGAGTCGCCAAACCCTAACATGTCG--------------------------------------
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>chr5A_876
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----------------------------------------------------------------AAAGTGCTAATGTGAT
CACGAGCTGCAGTGAGCTCGTTATCTGTACCACATGTGCCCCTCGTGATGCGCGGTGGTGGACAGTTCTTTCCACCTGGG
AATTCCAGTCCACAATTTTTATTATGGCCCATGGCCCACTAGTCGGGTGCAATCATGGGGTACTCCGTCACTCAAGCCCG
TCGCGGAACAGAAATTCAGCCTGGCGGGGCAGAAACTCGCGAACGATATGCGCCGTCTCGAACGAGATTCTGGTCTAACG
GGTGGGTTGTGCTTTCATTGG-----ATGCATCTTCCCGTTGGAGGCAGCAATCATATCCAGCACGGTTCCCATCTACTT
AAGCTTCTCCCCCCAGTCGATTCATCTCATAGATCACTAGCTGATTTCCAATCGTAGCGGAGCCGTT-------------
------CAACTATGTCTGCATCATCTTCATCGGCAGGCC-AGGATGAGATCTTGCCCCTGATTCCTTGTACACAATGCGG
C-------------------------------------------------------------------------------
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------------------------------------GGCCGGGTGTACTCATACACATCAGCAAGCAATGCAGAAGCACC
AGTTAATACATAACAAAGTTGATCAAACACTACGGATCCCAATTATC---------------------------------
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-------------------------------------------------------ATGATCACCATACACAGTTATTCCT
CATACACAGCTAAACCAGTGACAAACTAGGGCAATTTCACATGCAGTTATTCCTCATACGAGTTCACAATG------AAT
TACACAGATCATAAGCAACACAAAG---------AAAAAAAATACAGTTCTCCATGTCGTGCAACATAACTTCAAGGCGC
GATACGGTCAGCTCTTCAGCCTGAGCTCGGCCGCTTTGTGGCAGTTGTTCCTACAATGCCCTTCAACACCACAATTCTTG
CATCTCCTAGGCTTCCGAGGCTGTTT-GGCATGTCGCCGCGATCAGGGCAGGTTGTTCGTTTATGCGCCTCTCGTCGGCA
TATTGTACAGAATCTTGTTCTCTTATTCAGACCTTTGTAAGGCGCTTTCTCTCGACTCGTGGTAGGCCAACCCA
>SNPs
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-------------------------------------------------------------------------------S
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--S----------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------
---------SSSS-S---------------------S-S-S--------------S-----SSSSS--------S----S
-SS---S-----S-----S--------------------S--S---SSS----S----S----S------S--S-S-S-S
S-S--------------S-SS-S---SSS------S-S-SSS-----S--S----SS--SS-S----------S-----S
-SS-SSSSSSSS-SSSS-SSSSSSSS----------------------------SSSS-SSS---------S----S---
--S-SS----S--S---------S--S-SS-----SSS----SSS----S---SS-S-S-----S--SSSSSSSSSSSSS
SSSSSS----S-----S--S-----S-----S-S-S-SSS------S------------SS-----------S-S-----
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-S--S-S---S---S-S-S--S-S--SS--S-SS---SS-SSSS
SS-SSSSS--SSSSSSSSSS-SS--SSSS-SS-S-SSSS-SSSSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------S-SSSSSSSSS
SSS-SS--S-------------------------S--S------S-S-----S---S--S------SSS-SSSSSSS--S
S-----SS-------S-SSS-SS-SSSSSSSSSS--S-----------S---SS---S-SS---------SSS-S-SSS-
----------------S---------------S--------S--S--------SS-------------------------
-----S--------S-----------S----S---S-----------S--S-------SS-----SS---------S-S-
---SS--S-S---------------S-S-------S--SS-----------------S--S---S---S-----
>forward_695
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-----------------------------------CATATCGCAGAAAGCCGTGC-------------------------
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>reverse_1630
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-----------------------------GCAGATTGTCCAGCTGTCCT-------------------------------
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>forward_1210
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----------------------------------------------------------------------TGGACTAACC
GAGGCACCTA----------------------------------------------------------------------
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>reverse_2187
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--------------------------TGTCGTGTCAGCCCTTGTTT----------------------------------
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