>input_sequence_71735
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--------------------------------------------ATGGCCTCGGCCGCGCCGCCCCTCCTCCCCACCACC
GTCCCGGCCGCCGCGCCCGCGACCGTCCTCCCCGCCGCCCCGGACGCCGCCGCCGCCAACTCCATCGCCTCCCCGGACCC
GGCCGCCACGCGCGCCTTCCTCGGCCGCCTCTACGACTCCGCCAAGCGCTCCCTCTCGGGCGCCCGCCCCTGGCCCGAGC
TCCTGGACCGCGCCGCGCTCTCGCGCCCGGATTCCCTCTCCGACGCCACCGCCCGCCTCCGCAAGAACCTCGCCTACTTC
CGCGTCAACTACGCCGCGCTCGTCGCGCTCTCCCTCGCGGTCTCCCTCCTCGCGCACCCCTTCTCCCTCGCCGCCCTCCT
CGCGCTCCTCGCCGCCTGGTGCTTCCTCTACCTCCTCCGCCCCGCCGACGCCGCCCCGCTCAACGCCTTCGGCCGCACCT
TCTCCGACAGGGAGACGCTCGGGGGCCTCATCGCCGCCTCCGTCTTCGTCGTCTTCCTCACGTCTGTCGGTGGGATCATC
TTCTCCGCGCTGGCGCTCGGCGCCGCCGTCGTCTGCGCGCACGGTGCCTTCCGCGTGCCTGAGGATCTGTTCCTCGACGA
GGTGCCCGACCAGGGCCTCGTAGGAAACGGCGCCACCATCAACCTCCTCTCCTTCATCAACGGCGCTGCCGGAGGAGGAG
GACGCGTCTGA---------------------------------------------------------------------
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>chr4A_1_TraesCS4A01G180500
CCGGCGGGAAGTGGCCACCGGGGTCGGAATGACCATCGGTGCAGCGAGGCCTGGTGGCCGCCGGGGCCGAAGTGGCCTTC
GACGGGAGAGCGGGGCGGGGGCTAGGCTAGGCTAGACTAGAGCGGTGCTACCTACTGCCATCGTTAGCTCTCTTCCAGTG
CGGGATCTGTTTTTCCCGAGTGCTGGGATTGCTTCTACCCCGGAATCAAAGCTGTCCTGCAAAAAAGAAAGAAAAAAGAG
TCAAGATGCATCCACCATGTTTCATTCACCATTACCAGGCACCAAGTTCCAACTGTAAATCTCAGCAAAAAAAAAAGTTC
CAACTGAA-AAAGAAAGTTCTCGTTGTGATTTTTCGGTTTGGCAGGCCCATTCGACACATCTAGTGGGTTCTTCAAAATG
TTTGCAAGCTTTATCTCATTTTTCAGAACCGAAGAAATGCAGGTGAGTTGTCTGTTTCCTTGTACCTA------------
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---------------------------------------------------------GTTGTGAGTTGGGAAGGAAGAAG
GATGGGTGCATCACAGCAAACGATGGTGTGCCATGTTTTCCTCGCCTAACAAAGAAAGCTCTGCTCCATCTCCATGTAGT
AGGTGTTTCATTTCCTCCTTGTA---CAAGGCTGGATCTCAACATTGCATCTTCATCTACAACACTCCTACCAAACTTTG
TCTGGAGTAGCGCCAGGTGGCGGTTTTTGTGCTCGTAAAGGGGTTCCGTTCATCCCACCGACACG---TTTTTTTCGGAG
GGAAAACCGACACGGTTTTCTTCACCA-----GTATGCGAAGGGAAAAAGAAGTGGTGGAAAAAAAAAGGGTGCAGCCGT
CCGAAACCGTTGACCCGTCGCATCCCCCGGGGTGGGCTGGTGCGTCGGTGCTAAGAAACCAACCAGCCACCAATTCTCCA
ATACAAAACAACCCATTTCCACTTCCATTCGCATCCTCCTC---GCTTCCCCAGATCCAAATCGCGCGCGAGAGAGCAAA
GGGAGGAAGAAAGAGATCTCGCCCAGCGCCACCCCGAATCCGCCATGGCCTCGGCCGCGCCGCCCCTCCTCCCCACCACC
GTCCCGGCCGCCGCGCCCGCGACCGTCCTCCCCGCCGCCCCGGACGCCGCCGCCGCCAACTCCATCGCCTCCCCGGACCC
GGCCGCCACGCGCGCCTTCCTCGGCCGCCTCTACGACTCCGCCAAGCGCTCCCTCTCGGGCGCCCGCCCCTGGCCCGAGC
TCCTGGACCGCGCCGCGCTCTCGCGCCCGGATTCCCTCTCCGACGCCACCGCCCGCCTCCGCAAGAACCTCGCCTACTTC
CGCGTCAACTACGCCGCGCTCGTCGCGCTCTCCCTCGCGGTCTCCCTCCTCGCGCACCCCTTCTCCCTCGCCGCCCTCCT
CGCGCTCCTCGCCGCCTGGTGCTTCCTCTACCTCCTCCGCCCCGCCGACGCCGCCCCGCTCAACGCCTTCGGCCGCACCT
TCTCCGACAGGGAGACGCTCGGGGGCCTCATCGCCGCCTCCGTCTTCGTCGTCTTCCTCACGTCTGTCGGTGGGATCATC
TTCTCCGCGCTGGCGCTCGGCGCCGCCGTCGTCTGCGCGCACGGTGCCTTCCGCGTGCCTGAGGATCTGTTCCTCGACGA
GGTGCCCGACCAGGGCCTCGTAGGAAACGGCGCCACCATCAACCTCCTCTCCTTCATCAACGGCGCTGCCGGAGGAGGAG
GACGCGTCTGAGCCAGCCTCCTGTCCTCAGCTCTCTGATCTGCTACTCGGAACAGACAAGTAAAGTCAGTGGCTGGTTGA
TTCGTTTTTCCAGAAACGAAGTACTTCTACTTGTTTATTAAGATCATACTACGCGTTGCCTTTAAGAACGTGAGGAGGAG
A-TTAGAAGAGGATGCATTGGAGTTATACTACACACAG--GATATACACAAAAGAAGGAACCTTGGGATCTAGTTTTGTT
TCATTTTGCATTTGATATTGCTGTATGATGACAAAGTTGAGCTTATTAGTATTGATATTCATATGATATGTGTCTTGGTG
TTACTAGCATACAGGACAAAATAAATTGCTGCTCCTCGTCTTAACATAAAAATGAAATATATGATGATTAAGTACACCAT
TTCTTTTCAAGAGATCGATCAATGTGATTTCGCATATGATCTTGATTCTGGCGTGGAGGATCTTGGGTCTAGGTGATTCA
TTT-CGATCATAGTAGAGTTCTTCTTTTCTATGCTAATGTATCTTGCATCCTT----------------CTTGGAGTGCC
CTGTTTATTCTTTGACATTGGAGCTGGATATCATTTGTAAGTCTAGTCTCGTTCTTATTTAAAAAAATATATAATGCTAT
CATCGATCGAATTGCAATGACAGA--------------------------------------------------------
-------------------TAAATAACGGAAATGAATATTTTTTTGAGAATTCACGGAAATGATATTTAGCTGACGTAAA
AAATCTGGCTGCTCGCAGCGAACGTTATCATC--------------------------------AGGTTGCCATGTTACG
GTGCAGCAACCGTTCGCAAGAACATGGGCACCTGTGAACGAACCCTGTACCGGCACTACTCTCTCCTTCCTCTCACTCTC
CGCATTATGTGCCACCCTCCTCCCTTCCTCTTGACTTCACTCTCCTTTGCGACAACGGTTCGAGGTGGTTGCCGATTCCT
CACCATCGAATCGAGCGCCGTTGGTTGCTACCGTTGAGAGCCGCTCCCCTCCCCCCTCCCCCCCTTTTTTTGCGAATCAA
GAGCTTTATAACTCAATT
>chr4B_176
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---------------CCGAGTGCTGGGATCACTTCTACCCCGGAATCAAAGCTGTCCCGTAAAGA------AAAAAAGAG
TCAAGCCGTCTCCACCACGTTTCATTCGCCATTACCAGACACCAAGTTCCAACTGAAAATCTCAGCAAAAAAAAAAGTTC
CAACTGAA-AAAGAA----------GTGATTTTTCGGTTTGGTAGGCCCATTCGACATATCTGGTGGGTTCTTTAAAATG
CTTGCAAGCTTTATCTCATTTTTCAGAACCGAAGAAATGCGGGTGAGTTGTCTGTTTCCTTGTACTACCAACTTGGC---
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-----------------------------------------------------------TGTGAGTTGGGAAGGAAGAAG
GATGGAGGCATCACAGCCGACGATGGTGTGCCATGTTTTCCTCGCCTAACATAGAAAGCTATGCTCCATCTCCAT---GT
AGGTGTTTCATTTCCTCCTTGTA---CTAGGCTGGATCGCAACATTGCAGCTTCATCTACAACACTCCTACCTAACTTTG
TCTGGAGTAGCACCAGGTGGCGGTTTTTGTGCTCGTAAAGGGGTTCCGTTCATCCCACCGACACGG-TTTTTTTTCGGAG
GGAAAACCGACACGGTTT-CTTCACTA-----GCATGCCAAGGGAAAAAAAGAAGTACCGG-AAAAATGGGTGCAGCCGT
CCCTAACCGTTGACCCGTCGCATCCCCCGGGGTGGGGTGGTGCGTCGGTGCTAAGAAACCAACCAGCCACCAATTCTCCA
ATACAAAACCATCCATCTCCACTTCCATTCGCATCCTCCTC---ACTTCCCCAGATCCAAATCGCGCGCGAGAGAGCAAA
GGGAGGAAGAAAGAGATCTCGCCTAGCGCCACCCCGGATCCGCCATGGCCTCGGCCGCGCCGCCCCTCCTCCCCACCACC
GTCCCGGCCGCCGCGCCCGCGACCGTCCTCCCCGCCGCCCCGGACGCCGCCGCCAC---CTCCATCGCCTCTCCGGACCC
GGCCGCCACGCGCGCCTTCCTGGGCCGCATCTACGACTCCGCCAAGCGCTCGCTCTCGGGCGCCCGCCCCTGGCCCGAGC
TCCTCGACCGCGCCGCGCTCTCGCGCCCGGACTCCCTCTCCGACGCCACCGCCCGCCTCCGCAAGAACCTCGCCTACTTC
CGCGTCAACTACGCCGCGCTCCTCGCGCTCTCCCTCGCCGTCTCCCTCCTCGCGCACCCCTTCTCCCTCGCCGCCCTCCT
CGCGCTACTCGCCGCCTGGTGCTTCCTCTACCTCCTCCGCCCCGCCGACGCCGTCCCGCTCAACGCCCTCGGCCGCACCT
TCTCCGACAGGGAGACGCTCGGGGGCCTCATCGCCGCCTCCGTCTTCGTCGTCTTCCTCACGTCTGTCGGTGGGATCATC
TTCTCCGCGCTGGCGCTCGGCGCCGCCGTCGTCTGCGCGCACGGGGCCTTCCGCGTGCCAGAGGACCTGTTCCTCGACGA
GGTGCCCGACCAGGGTCTCGTAGGAAACGGCGCCACCCTCAACCTCCTCTCCTTCATCAACGGCGCTGCTGGAGGAGGAG
GACGCGTCTGAGCCAGCCTCATGTCCTCAGCTCTCTGATCTGCTACGCGGAAGAGACAAGTAAAGTCTGTGGCTGGTTGA
TTCGCTTTTTCAGAAACGAAATACTTCTACTTGTTTG---AGATCGTACTACGCGTTGTCTTTAGGAGCGTGAGGAGGAG
A-TTAGAAGAGGATGCATTGGAGTTATACTACACACAG--GATATACACATAAAAAGGAACCTTGGGATCTAGTTTTGTT
TCATTTTGCATTTGATATTGCTGTATGATGACAAAGTTGAGCTTATTAGTATTGATATTCATATGATACGTGTCTCGTTG
TTACTAGCATACACAACAAAATAAATTGCTGCTCCTCGTCTTAGCATG-AAATGAAATATATGATGATTAAGTACACCAT
TTGTTTTCAAGAGATCGATCAATGTGGTTTCACATATGATCTTGATTCTGGCGTGGAGGATCTTGGGTCTAGATGATTCA
TTTTCGATCATAGTAGAGTTCTTCTTT-CTATGCTAATGTATCTTGCGGCAATGTGGCCCATCAATGTCATTGGAGTGCC
CTATTTATTCTTTGATATTGGAGCTGAATATCATTTGTAAGTCTAGTATCGATCTTATTTAAAAAAAT-TATAATGTTAT
CATCGATCGAATTCCAATGACAGAAGTCCATGCAAGGTGGTGAAACAAGTCCTGTGAGCCTGGTTTGAGATCTCCTTTTA
CCGTCCCCAAAAGAACCGATAAATAGCGGAAATG-----TTTTTTTAGAATTAACGGAAATGATATTTAGCTGACGTAAA
AAATCTGGCTGCTCGCAGCGAACGGTATCATCGTCGCTGGTCACGTTGCACGAATCTTCACGTCAGGTTGCCATGTCACG
GTGCAGCAACCGTTCGCAAGAACATGGGCACCAG----CGAACCCTGTACCGGCACTACTCTCTCCTTCCTCTCACTCTC
CGCATTACGTGCCCCCCCCCCCTCCTC-----------------------------------------------------
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>chr4D_315
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--------------------------------------------------------------------------AAGTTC
GAACTTAAGAACGAAAGTTCTCATCGTGATTTTTGGGTTTGGTAGGCCCATTCGACACATCTGGTGGGTTCTTCAAAATG
TTTGCAAGCTTTATCTCATTTTTCGGAATCGAAGAAATGCAGGTGAGTTGTCTGTTTCCTTGTACCTACTCCCTTCGTCC
GGGTTTATCTTAGGGGGTGTTTGGTTCAGAAGTCTTAGGACTTTTTCTAGTCCCAGGGACTAATCAAAAAAGACTCTCTA
GTAGAGTCTTTTTCTAGTCCCTGTAGAAAAAGTCCCTCCCGTTTGGTTCCTAGGGACTTTTTCTAGTCTCTGGGACTAAA
AAGTCCCTGAACCAAACACCCCCTAAGCCTCTCAGCATCACAAGCATGTCCCTTTTTATAAGGCCCCGCTTTGAAAAGGT
GCATGCATGCAACCATTTCATTGGTTGCATTGAAAGCCATTGTTGTTGGTGCCATGGCCGGAAAATTAATACACTTCATG
CGTGCTTTTTCATTGGCTGCATGCTTGTGAAAGAGTGCATTGAAAGTGAAATGAAAGAATTAATGTGAGCAAATTATTAT
GTGTCTTGATCTCAGATAAGTTGTCTTTAGGCCTAATAAACCCGGGCGGAGGGAGTAGTTGTGAGTTGGGAAGGAAGAAG
GATGGGTGCATCACAGCCAACGATGGTGTGCCATGTTTTCCACGCCTAACAAAGAAAGCTCTGCTTCATCTCCATGTAGT
AGGTGTTTCATTTCCTCCTTGTAGTACTAGGCTGGATCGCAACATTGCATCTTCATCTACAACACTCCTACCTAACTTTG
TCTGCAGTAGCACCAGGTGGCGGTTTTTGTGCTCGTAAAGGGGTTCCGTTCATCCCACCGACACGGTTTTTTTTCCGGAG
GGAAAACCGACACGGTTT-CTTCACTGGTAGTGTATGCGAAGGGG-AAAAAGAAGTACCGG-AAAAATGGGTGCAGCCGT
CCCAAACCGTTGACCCGTCGCATCCCCCGGGGTGGGGTGGTGCGTCGGTGCTAAGAAACCAACCAGCCACCAATTCTCCA
ATAGAAAACCATCCATCTCCACTTCCATTCGCATCCTCCTCCTCACTTCCCCAGATCCAAATCGCGCGCGAGAGAGCAAA
GGGAGGAAGAAAGAGATCTCGCCGAGCGCCACCCCGAATCCGCCATGGCCTCGGCAGCGCCGCCCCTCCTCCCCACCACC
GTCCCGGCCGCCGCGCCCGCCACCGTCCTCCCCGCCGCCCCGGACGCCGCCGCCAC---CTCCATCGCCTCCCCGGACCC
GGCCGCCACGCGCGCCTTCCTGGGCCGCCTCTACGACTCCGCCAAGCGCTCCCTCTCGGGCGCCCGCCCCTGGCCCGAGC
TCCTGGACCGCGCCGCGCTCTCGCGCCCGGACTCCCTCTCCGACGCCACCGCCCGCCTCCGCAAGAACCTCGCCTACTTC
CGCGTCAACTACGCCGCGCTCGTCGCGCTCTCCCTCGCCGTCTCCCTCCTCGCGCACCCCTTCTCCCTCGCCGCCCTCCT
CGCGCTCCTCGCTGCCTGGTGCTTCCTCTACCTCCTCCGCCCCGCCGACGCCGCCCCGCTCAACGCCTTCGGCCGCACCT
TCTCCGACAGGGAGACGCTCGGGGGCCTCATCGCCGCCTCCGTCTTTGTCGTCTTCCTCACGTCTGTCGGTGGGATCATC
TTCTCCGCGCTGGCGCTCGGCGCCGCCGTCGTCTGCGCGCACGGGGCCTTCCGCGTCCCCGAGGACCTCTTCCTCGACGA
GGTACCCGACCAGGGCATCGTAGGAAACGCCGCCACCCTCAACCTCCTCTCCTTCATCAACGGCGCTGCCGGAGGAGGAG
GACGCGTCTGAGCCAGCCTCCTGTCCTCAGCTCTCTGATCTGCTACTCGGAAGAGACAAGTAAAGTCTG--GCTGGTTGA
TTCGTTTTTTCAGAAACGAAATACTTCTACTTGT---TTAAGATCATACTACGCGTTGCCTTTAGGAGCGTGAGGAGGAG
ATTTAGAAGAGGATGCATTGGAGTTATACTACAAACAGAGGATATACACATAAAAAGGAACCTTGGGATCTAGTTTTGTT
TCATTTTGCATTTGATATTGCTGTATGATGACAAAGTTGAGCTTATTAGTATTGATATTCATATGATATGTATCTCCTTG
TTACTAGCATACAGAACAAAATAAATTGCTGCTCCTCGTCTTAGCATG-AAATGAAATATATGATGGTTAATTACACCAT
TTCTTTTCAAGAGATTGATCAATGTGGTTTCACGTATGATCTTGATTCTGGCGTGGAGGATCTTGGGTCTAGGTGATTCA
TTTTCTATCATAGTAGAGTTCTTCTTT-CTATGCTAATGTATCTT--ATCCTT----------------ATTGGAGTGCC
CTGTTTATTCTTTGATATTG-AGCTGGATATCATTTCTAAGACTGGTATCGATCTTATT-----AAAT-TATAATGTTAT
CATCAATCCAATTGCAATGACAGA--------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS--------------SS--------------------------S-S---S-SSSSSS---------
-----SS-SS-------S---------S----------S----------------S------------------------
----------------------S-S-----------------S-------------------S-----------------
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-----------------S--------------------------------------------------------------
---------------------------S----------S---------------------------------S-------
-----------S--------------------------------------------------------------------
------------------S------S-----------------------S-SSS-SSSSSSS-----S------------
--S---------------------------------S-------------------------------------------
---------S-S----S---------------------------S-----------------------------------
-----------------------S--------------------------------------------------------
------------------------------------------------------S-SSS---------------------
---------------------S----------------------------------------------------------
-------------------------------S------------------------------------------------
--------------------------------------S-----------------------------------------
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--------------------------------------------S--------------S-----S--------------
-------------------------------------S------------------------------------------
----------------------------------------------------S--------------S------------
---------S----------S---------------S---------------------------S--S------------
--------------------------------------------------S--S--------------------------
---------------------------------------------------------------------------S-S--
--------------S----------------------------S---SS-------------------------------
--------------------------S----S------------------------------------------------
---------------------------S-----------------------------------------S----------
---------------S-------------------------------S---S----------------S-------S---
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-------------------------S--------SSSSS------S------S---------------------------
------------------------S---------------------------------------------------S---
--------------------------------S-SSSS------------------------------------------
-------S-----S---S--S-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_218
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--------------------------------------CCCGGAATCAAAGCTGTCCT----------------------
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>reverse_2228
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-------------------------------------------------------------------AGTGGCTGGTTGA
TTCGTTT-------------------------------------------------------------------------
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