>input_sequence_71734
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--ATGGTCTCCATGGCCGCCGCAGCAGACGACGACCACGACCGCCGCCGCGTCGCCAACCTCTCGCCGTCTCCCTCGGAC
GCCCCTGTTCCCGCGCAGCCGCACCGCAGGCGGCTCCACAGCTTCTCCTTCCCCACGCTCAGCTGGGGCACGCACCGCCT
CCTCCGATGCTCCAAGGACCCCGCCTCGGCGCCTCCGCCTCCGCCTCCGCACACCCCGTCCCCGGACAAGGAGAAGGCCC
GTCGCTCCACGGATGGCGGTGCCGGAGGCGGTTTGCCCCAGCGCCCCCCTCAGCGGCCCTGGAACCTCCGCACCCGCCGC
TCCGCCACTGCCGCACCCGGTGCGGTCGGGCCGGAGGCCGCAGCCGATGCTGCGGCGGAGCACGCGCCGGCGCGGCCTGC
GCAGACCAAGAAGCGGGGGTTTTCCATCGTGCTGTCCAAGGAGGAGATCGCCCAGGACTTTGCCTTCTTCCGCGGTACGC
GACCCCCGCGCCGGCCCAAGAAGCGCTCTCGCCCGGTGCAGCGCCAGCTCGACGTAAGGATCGGACCTGCGTTTGTAATT
CTCAAGTTTTCGGTGTTTGAATTTGGCGTCTTATTCGAGTTTTTGTTGTTGTTATTGTTGGAATTGCAGTCGCTGTGCCC
TGGATTGTCCCTAGTGGATTTGACGCCGGACTCGTACAAGATCGAGTGA-------------------------------
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>chr3D_1_TraesCS3D01G262900
TGTCCGACAACATTTCTCCTCCGACGATGAAGGGGCTAGGACATGTCCATTTCAAATGGGGTAGCACCGTTGGGTGCACC
ATCCGTGCCCACATGTCCGTTTGACGACTCGGATGGACAAAAAACGAACAGATTTTGTGTCCATTTGGGTCTCCCGCTTG
GAGTTGCCCTAATGCGTGTCTTTTTAACCCAGTACAATCAAAGTCGCACT--------CACCCCTATGAACACACGCATG
CATATTTTTGAAAGACTGGGTTAACATAGCATCTTGAGATTTTACGAAGTCATCATAGGCACCGCGCAGTCGACAAAAAG
TCTA-CTCTCAATGAACGAGCATCACCGGAAGTCTGAAATACATTTAGGAATAATGCAAGCAGCAATGTCAAATTTAGGA
TTTGAACTCTCTCATGAGT-------------------------------------------------------------
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--------------------TGGGATACCAC-TTTCATCCTAATCATTATCTCATGTTTTCAT--CCCATTTTTTCGTTG
TGCACATCTCGCCGCCAAAGAAAAATAAAAGTCTTGCACATCTCGCCGCCAAAGAAA-AATAAAAGTCTTGCACATCGAA
AAGACCGAAAGAGGCGCCGATAGAGCCAGAACGGGCTGGGTGCCTGGGCCCCCGGCGTTACGTCTGATGGCGGCGGCTCG
ACCCGCCGCTACCCGCGAACACGTGATGACACCACGTCCGTTTCCTCCGTAGCCCCCTCACCCGACGGGGCGAGACAGAG
AGAGAGAGAAGGGGAGGAAGGCGACCGCCGCCCGCTCGCGCCACACCGATCAGGCGCGCGACACACCAAAGGCGAGGGAG
GCCCAGACGTCCAACGCACACGCAATTCTGGAAGGAGCCCCGCAGACGAAATCCCAAGGCAGG-----------------
-------GGTAGAAACTGGCCTTTCCCGGTTTTAAAAATCCCACCTTTCTTTCTCCCTAGTCCTCATCCCCCCGTCTCGT
CTTTCTCGCTTCCTTCCGCCCCCTTCTTTCCCTCCCTCC----TCTCCTCCCCGACGCGCTACCCGACTGCCCCTCCCTC
CTATGGTCTCCATGGCCGCCGCAGCAGACGACGACCACGACCGCCGCCGCGTCGCCAACCTCTCGCCGTCTCCCTCGGAC
GCCCCTGTTCCCGCGCAGCCGCACCGCAGGCGGCTCCACAGCTTCTCCTTCCCCACGCTCAGCTGGGGCACGCACCGCCT
CCTCCGATGCTCCAAGGACCCCGCCTCGGCGCCTCCGCCTCCGCCTCCGCACACCCCGTCCCCGGACAAGGAGAAGGCCC
GTCGCTCCACGGATGGCGGTGCCGGAGGCGGTTTGCCCCAGCGCCCCCCTCAGCGGCCCTGGAACCTCCGCACCCGCCGC
TCCGCCACTGCCGCACCCGGTGCGGTCGGGCCGGAGGCCGCAGCCGATGCTGCGGCGGAGCACGCGCCGGCGCGGCCTGC
GCAGACCAAGAAGCGGGGGTTTTCCATCGTGCTGTCCAAGGAGGAGATCGCCCAGGACTTTGCCTTCTTCCGCGGTACGC
GACCCCCGCGCCGGCCCAAGAAGCGCTCTCGCCCGGTGCAGCGCCAGCTCGACGTAAGGATCGGACCTGCGTTTGTAATT
CTCAAGTTTTCGGTGTTTGAATTTGGCGTCTTATTCGAGTTTTTGTTGTTGTTATTGTTGGAATTGCAGTCGCTGTGCCC
TGGATTGTCCCTAGTGGATTTGACGCCGGACTCGTACAAGATCGAGTGAGGTAAGGAACAAGGGATCGTTTGA--CTTCT
TGTCGCAATTCGGTTCTTTTCTTTGATTTGGCTCTGAAGATGCGCTTGTCTTCTTGCAGAGGTGAATGCTGATATGGTGG
AGATTCAAATGGGAAGGGATTCAGATGTGGTCATCTCTTTTGTTCTCCGATGTTCTGATCGCGTTTCTTTCTTATGTGAA
TGGCTAAAAATCTCTGCTTCATAACTCAGAACTGTGTTATGGTGGAACATTTTAGATGAAGTTCAGTGTAGTATCTCTTT
AGATGATGTGTTGCCATGGAGTTGGTGAGTAGTTTAAAGTTAAGGAATTTGGTTATTGGGCTTGTAGGATTGCTAATTGT
ATCAAGGTTATGATCCTTAGTGGGGTGTACTTGTCCTGTTATGTATACATGGGTAATGATCTATGAAGGTCTTTTTATAT
GAAATTGCAGGAAACAGTTCAATTTTGCTTCATTGTAGCGGTGAGGTGTTTTAAGTGTTCTTGTGCATTGATCGCATTCG
TTTTCTTCTGTGATTGGTAAAAACGCCATTTTCATAATTCATAAGTGGTGTTATTGTGGATGTTTTAGATAAGGTACAGT
GTACTATCTCTTCTGTTGATATGTTGGGATGTACTAGTTTCTGAG--------TAGGTAAAGTAAAGGAATTTGGCTGTT
GGACCTGTTACATTGCTAAAATTGTATGAAGGTTATGAACTTATGATCCT---TAGGTGGGGTGTAATTGTCCTGTTATG
TACACATGGGCATTAATCCGTGAAGGTTTCTTATATGAAATTGTACGAGAACAGTTTGATTCTGCTTCTTATTGTAGCTC
TGACGTGTCTAAGTACTCTTGTGCAAGTCGCCAAGTCT----------------------------------CGGCTTAG
CAAACATAAAACAATAGTTGCACTGTATATTTGCATAACATGGAAAGAAGATGCTTTGACTGTACTCTGATACGTTACAC
ATGTTT-TTAATAGAATGGTTCGATGTTGTGTAACATAACTTGGAGTATCCATAGTG
>chr3B_1
TGTCTGACAACATTTCTTCTCCGATGATGAAGGGGCTAGGACATGTTTGTTTCAAATGGGGTAGCACCGTTGGGTGCACC
ATCCGTGTCCACATGTCTGTTTGATGACTCGGATGAACAAAAAA-GAACATATTTCGTGTCCGTTTGGGTCTCCCGCTTG
GAGTTGCCCTAATGCGTGTTTTTTTAACACAATACAATCAAAGTCGCTCAAATACACCCACCCCTATGAACGCACGCATG
CACACTTTTAAGAGACTAAGTCGACATAGCATCTTGAGATTTTACGAAGTCACCATAGACGTCTCGCAGTCGAAAT---G
TCTT-CTTTCACTGAACGAACATCACCTGAAACCTGAAATATGTTTAGGAATAAAGCGAGCACCAATATCAAGTTTAGCA
CTTGAATTTTGGTGGACTGGGA----------------------------------------------------------
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------------------------------CTTTCCTTCTCAATGATCGTCACATGTCTTTCACCCCCAATTTTTCGTTG
TGCACATCTCGCCGCCAAAG-----------------------------------AA-AATAAAAGTCTTGCACATCGAA
AAGACCGAAAGAGGCACCGATCGAGCCAGAACGGGCTGGGTGCCTGGGCCCCCGGCGTTACGTCTGATGGCGGCGGCTCG
ACCCGCCGCTACCCGCGAACACGTGATGACACCACGTCCGTTTCCTCCGTAACCCCCGCACCCGACGGGGCGAGAC--AG
AGAGAGAGAAGGGGAGGAAGGCGACCGCCGCCCGCTCGCGCCACACCGATCAGGCGCGCGACACACCAAAGGCGAGGGAG
GCCCAGACGTCCAACGCACACGCAATTCTGGAAGGAGCCCCGCAGACGAAATCCCAAGGCAGCAGGGGTAGAAAAGAAGA
AATTTTCGGAAGAAACTGGCCTTTCCCCGTTTTAAAAATCCCACCTTTCTTTCTCCCTAGTCCTCATCCCCCCGTCTCGG
CTTCCTCGCTTCCTTCCGCCCCCTTCTTTCCCTCCCTCC----TCTCCTCCCCGACGCGCTACCCGGCTGCCCCTCCCTC
CTATGGTCTCCATGGCCGCCGCAGCAGACGACGACCACGACCGCCGCCGCGTCGCCAATCTCTCGCCGTCTCCCTCGGAT
GCCCCGGCTCCCGCGCAGCCGTACCGCAGGCGGCTCCACAGCTTCTCCTTCCCCACGCTCAGCTGGGGCACGCACCGCCT
CCTCCGATGCTCCAAGGACCCCGCCTCGGCGCCTCCGCCTCCGCCTCCGCACACCCCCTCCCCGGACAAGGAGAAGGCCC
GCCGTTCCACGGATGGCGGTGCCGGAGGCGGTTCGCCCCAGCGCCCCCCTCAGCGGCCCTGGAACCTCCGCACCCGCCGC
TCCGCCACTGCCGCGCCCGGTGCGGTCGGGCCGGAGGCCGCGGCCGATGCTGCGGCGGAGCATGCGCCGGCGCGGCCTGC
GCAGACCAAGAAGCGGGGGTTTTCCATCGTGCTGTCCAAGGAGGAGATCGCCCAGGACTTTGCCTTCTTCCGCGGCACGC
GACCCCCGCGCCGGCCCAAGAAGCGCTCTCGCCCGGTGCAGCGCCAGCTCGACGTAAGGATCGGACCTGCGTTTGTAATT
CTCAAGTTTTCGGTGTTTGAATTTGGCGTCTTATTCGAGTTTTTGTTCTTGTTATTGTTGGAATTGCAGTTGCTGTGCCC
TGGATTGTCCCTAGAGGATTTGACGCCGGACTCGTACAAGATCGAG-GAGGTAAGGAACAAGGGATCGTTTGATTCTTCT
TGTCGCAATTCGGTTCATTTCTTTGATTTGGCTCTGAAGATGCGCCTGTCTTCTTGCAGAGGTGAATGCTGATATGGCGG
AGATTCAAATGGGAAGGGATTCAGATGTGGTCATCTCTTTTGTTCTCCGATGTTCTGATCGCGTTTCTTTCTTATGTGAA
TGGCTAAAAATCTCTGCTTCATAACTCAGAACTGTGTTATGGTGGAACATTTTAGATGAAGTTCAGTGTAGTATCTCTTT
AGATGATGTGTTGCCATGGAGTTGGTGAGTAGTTTAAAGTTAAAGAATTTGGTTATTGGGCTTGTAGGATTGCTAATTGT
ATCAAGGTTATGATCCTTAGTGGGGTGTACTTGTCCTGTTATGTATACATGGGTAATGATCTATGAAGGTCTTTTTATAT
GAAATTGCAGGAAACAGTTCAATTTTGCTTCATTGTAGCGGTGAGGTATTTTAAGTGTTCTTATGCATTGATCACATTTC
TTTTCTTCGGTGATTCGTAAAAATGTCATTTTTATAATTCGTAAGTGGTGTTGTTGTGGATGTTTTAGATAAGGTACAGT
GTACTATCTCTTCTGTTGATATGTTGGGATGTACGGAGTAGTTTCTAAATATATAGGTAAAGTAAAGGAATTTGGTCGTT
GGACCTGTTGCATTGCTAAAATTGTATGAAGGTTATGAACTTATGATCCTTATTAGGTGGGGTGTAACTGTCCTGTTATT
TA--CATGGGCATTAATCCGTGACTGTTTCTTATATGAAATTGTTGGAGAACAGTTTAGTTCTGCTTCTTATTGTAGCTC
TGAGGTGTCTAAGTACTCTTGTGCAAGTCGCCAAGTCTGCATTTGCTTGTTGTGATTGCATACTTTCCGAATCGGCTTAG
CAAACATAAAACAATAATTGCACTGTATATTTGCATAGCATGGAAAGAAGATGCTTTGACTGTACTCTGATAGGTTACAC
ATGTTTCTAATAA-AATGATTTGATGTTGTGTAACATAACTTGGAGTATCCATAGTG
>chr3A_1
TGTCAGGCAACATTTTTTCTCCAACGATGAAGGGGCTAGGACATGTCCGTTTCAAATGGGGTAGCACCGTTGGGTGCACC
ATCCGTGTCCACATGTCCGTTTGACGACTTAGATGGACAAAAAACGAACAGATTTCGTGTTTATTTGGGTCTCCCGCTTG
GAGTTGCCCCAATGTGTGTTTTTTTAACACAATACAATCAAAGTCGCTCACATACGCTCCTTCGTAGGAACGCACGCACG
CACACTTTTGAGAGACCAAGTCGACATAACATCTTAAAATTTTACGAAGTCACCATAGACGCCTTGCAGTTGAGGAAAAC
ATTTCCTTTCACTGAACGAACATTGCCGGAAGCCTAAAATACATTTAAAAATAATGCAAGCACTAATGTCAAGTTTAGGA
CTTGAACTCTGGTCGAGGAAATTGCACAAACCACCACTTGTTGGGGCTAGTGTTGCATAAAGCACCTACAATACAGGTTT
GTTGCGAAGAACACCACATATTGGTGTAATACATTGCAAATAGGTCTAATCTAGTGTTTAGACGCATTGACATAATTCTA
GATAGATAGGTCCCGATTGTAAGGGCAATTTCAACCGGCTGATCCAAACAAACATGATTTTTGTTTGTTTTGGTCAGCCA
AGCAGACGCTTGTCGAATTTTTATTTAGATTGGTCAATGCGCCCACTTTGACTGACACATTTGTCCGCGTGGTCTTAAAT
AAATAAATAGGCACACAAAATATTTAAATTTAAAACATAATTAAACATTAAAATCTTCAGACAAAATCCACTTCAAACAT
AATTAAACATAAAACATAATAAAAACAAAAAGCCTCCCAGCCGTCCTTGCCCATAGCCCTAAGTGTCATCCTCGTCGTTG
GAGCGGGTGAGGTCAAGGAACTCCAGCGGCTGCGCCCAGGGGAACACCGTCTGGTAGGCTGCCAGCGTGGCCTCCTCCGA
CGGGGCCGCCTGGCTCCGGGCGCCTCCTCCTCTTGCTCGCGCCGTTCCTCCTCCTCCTACTCGCGCAACCAGCGCTGTCG
GTGCTCCTCCTCCCCGCGCTCGCGTTGCATGCGGTGCTCCCCATTGGCCCGCTCCTCCTCTAGTGCGGTGCCACTGCTCA
AGTTAGGCTACTTGCTCCTCCTCCGACGCTCGAGCCACGCCCGCGGCATGCTAACCCTCCCGCATGACGCCCTGCCACCG
CGTAAGTCCCGGTGGCTGCGGGCGGAGCCGCCACGGGCGCATACAATGACGGTGGTAGTGAAGGATAGACGCAATCGCCG
ACCGCGGAGAGCTAGAGCTCCTCCTCCGAACCAGATGTATGAGACTAGTCATTATTATTTTGTGATGACCACTACTTGGA
TGTAGTGGCCACATAGAAACTACTTGGATGCTAAAATCTAATGGCAACAATATCTACCATGTTTTTGGTGCTAGTGATCA
CATGCCGAACTTGTTTCATTCGAAGTTTTGTTCAAAATTTAATAATTTCAGAAAATGTGAAAAATTTGACGTTACCATTT
AAGGAAAGTTTTACCACATTTAGACCAATGGTTTGCTAGAATATGGAAGTTTTAGTTAGCCCATACTATTTTTTATTCAA
ATTTTGACATTTTCAGTAAAATGTGAAATAATTCCTGTAAATATTACATGTATTCAATATTAATTTGGGAAAGTTACGGC
TCAATTGGACCACATGTTTGGGAAGATAATGACAGTCTAATATGTTGGCTTTTGTGGCTTTTTTTATTGCCACATGTGCA
CTTACAAGCGTACCTATCTGTCTGGAATTATATAAATGTGTCTAAACACTAGATTATACCTATTTGCAATGTATTATACC
AATATGTGGTGTTTTTCGCAACAAACCTGTATAGTAGGTGTTTTGTGCAACATTAGCCTTAATAAGTGATGGTTTGTGTA
ATTCCCTCACTCTGGTCGGATGGGATACCGCTTTTCCTCCTAATCATCGTCTCATGTCTTTGACCCCCAATTTTTCGTTG
TGCACATCTCGCCGCCAAAG-----------------------------------AAAAATAAAAGTCTTGCACATCGAA
AAGACCGAAAGAGGCACCGATCGAGCCAGAACGGGCTTTGTGCCTGGGCCCCCGGCGTTACGTCTGATGGCGGCGGCTCG
ACCCGCCGCTACCCGCGAACACGTGATGACACCACGTCCGTTTCCTCCGTAACCCCCGCACCCGACGGGGCGAGA-----
---GAGAGAAGGGGAGGAAGGCG-----------------CCACACCCATCAGGCGCGCGACACACCAAAGGCGAGGGAG
GCACAGACGTCCGACGCGCACGCAATTCTGGAAGGAGCCCCGCAGACGAAATCCCAAGGTAGCAGGGGTAGAAAAGAAGA
AATTCTCGGAACAAACTGGCCTTTCCCCGTTTTAAAAATCCCACCTTTCTTTCTCCCTAGTCCTCATCCCCCCGT-----
----CTCGCTTCCTTCCGCCCCCTTCTTTCCCTCCCTCCCTCCTCTCCTCCCCGACGCGCTACCCGGCTGCCCCTCCCTC
CTATGGTCTCCATGGCCGCCGCAGCAGACGACGACCACGACCGCCGCCGCATCGCCAACCTCTCGCCGTCTCCCTCGGAC
GCCCCGGCTCCCGCGCAGCCGCACCGCAGGCGGCTCCACAGCTTCTCCTTCCCCACGCTCAGCTGGGGCACCCACCGCCT
CCTCCGGTGCTCCAAGGACCCCGCCTCGGCGCCTCCGCCTCCGCCTCCGCACACCCCGTCCCCGGACAAGGAGATGGCCC
GCCGCTCCACGGATGGCGGTGCCGGAGGCGGTTCGCCCCAGCGCCCCCCTCAGCGGCCCTGGAACCTCCGCACCCGCCGC
TCGGCCACTGCCGCGCCCGGTGCGGTCGGGCCGGAGGCCGCGGCCGATGCTGCGGCGGAGCATGCGCCAGCGCGGCCTGC
GCA------GAAGCGGGGGTTTTCCATCGTGCTGTCCAAGGAGGAGATCGCCCAGGACTTTGCCTTCTTCCGCGGCACGC
GACCCCCGCGCCGGCCCAAGAAGCGCTCTCGCCCGATGCAGCGCCAGCTCGACGTAAGGATCGGACCTGCGTTTGTAATT
CTCAAGTTTTCGGTGTTTGAATTTGGCGTCTTATTGGAGTTTTTT---TTGTTCTTGTTGGAATTGCAGTCGCTGTGCCC
TGGATTGTCCCTAGTGGATTTGACGCCGGACTCGTACAAGATCGAG-GAGGTAAGGAACAAGGGATCGTTTAA--TTTGT
TGTTGCGATTCAGTCCTTTTCTTTGATTTGGCTCTGAAGATGCGCCTGTGTTCTTGCAGAGGTGAATGCTGATATGGCGG
AGATTCAAATGGGAAGGGATTCAGATGTGGTCATCTCTTTTGTTCTCCGATGTTCTGATCGCGTTTCTTTCTTATGTGAA
TGGCTAAACATCTCTGCTTCATAACTCAGAACTGTGTTATGGTGGAACATTTTAGATGAAGTTCAGTGTAGTATCTCTTT
AGATGATGTGTTGCCATGGAGTTGGTGAGTAGTTTAAAGTTAAGGAATTTGGTTATTGGGCTTGTAGGATTTCTAATTGT
ACCAAGGTTATGATCCTTAGTGGGGTGTAATTGTCCTGTTATG--TACATGGGTAATGATCTATGAAGGTCTCTTTATAT
GAAAATGCAGGAAACAGTTCAATTTTGCTTCGTTGTAGCGTTGAGGTGTTTTAAGTGTTCTTGTGCATTGATCACATTTC
TTTTCTTCCGTGATTCGTAAAAATGTCATT--------------------------------------------------
-------CTCTTCTGTCGATATGTTGGGATGTACGGAGTAGTTTCTAAGTATATAGGTAAAGTAAAGGAATTTGGTTGTT
GGACCTGTTGCATTGCTAAAATTGTATGAAGGTTATGAACTTATGATCC---TTAGGTGGGGTGTAATTGTCCTGTTATT
TA--CATGGGCTTTAATCCGTGAAGGTTTCCTATATGAAATTATAGGAGAACAGTTTAGTTCTGCTTCTTATTGTAGCTC
TGAGGTGTCGAAGTACTCTTGTGCAAGTCGCTAGGTCTGCATTTGCTTGTTGTGATTGCATAC-----GAATCGGCTTAG
CAAACATAAATTAATAGTTGCACTGTATATTTGCATAGCATGGAAAGAAGATGCTTTGACTGTACTCTGATAGGTTATAC
ATGTTT-TAATAA-AATGATTTGATGTTGTGTAACATAACTTGGAGTATCCATA---
>SNPs
----S------------S------------------------------S-------------------------------
-------S-----------------------------------------------S------------------------
-------------------S--------S--S---------------S-S---------------------S--------
--S-S------S-----SS--SS-----------------------------S-----S-S--S---------S------
---S---S---S-------S------------S-----------------------------S---------S-------
S---------SSSSSSS-S-------------------------------------------------------------
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-----------------------------S------S----------SS--------S--SSS------S----------
--------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
---------------S-----S----------------------------------------------------------
---------------------------------------------------S-----S------------------SS--
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--------------------------------------------------------------S-----------------
---------S-----------------S---------------------------------------------------S
---S--------------------------------------------------------------S-------------
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-----S-S------------------------------------------------------------------------
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-S-------------------------------S----------------------------------------------
--------------S--------------------------S--------------------S-----------------
---------------------------------------------------------------------------S----
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----------------------------------------------S---------------------------------
---------------------------------------------S-------------------------------S--
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-------------------------------------------------------------------------S----SS
--------S------S-------S-S------S-------S-----------S---------------------------
----------------------------------SSSS-SS-SSS------------------------------S----
---------S---------------------------------------------------------------------S
--SS-----------------------------------------S-----------SS---------------------
---S----------------------------------------------------------------------------
-------------------------------------S----------------------------------S-------
--------S-SS-S----S--S-----------------------------------
>forward_2383
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-------------------------------------------AGACGAAATCCCAAGGCAGG-----------------
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>reverse_4003
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--CACATGGGCATTAATCCGTGA---------------------------------------------------------
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