>input_sequence_71701
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ATGGACCTCGACGACGACATGATACCCTACTACGCCTCCGGCGACTCCTCGCCGTCCTCCTCCGACCTCGACACCGAGGT
AGTTATCGAATTTCCTGGCTGGGTGCGGTTAGTTGCATTTGCTCCGTTTTCTTGCGTGCGCTGACGGAGTTGTTGGTTTT
GGTCTCTTGGCAGTCGACGGGGTCCTTCTTCCCGGACCGGAGCACGACGCTGGGGACGCTGATGGGCGTGTCGACGTTCG
GCGGCGCCGGTGTGCAGCGGCGGCTGACTCGGGCGGCGCCGGGGCAGGAGAGCGAGAGGCCGACGCGGGCGGCAACGGAG
GAGCGAGACGGGCGGCGCGCGGGCGGGTGGCGACGGAGGAGGCGGCGGCGGGGCGGGAGCTGGTGGCGGCTGTGCCGCGA
CGACGCCAGCGGGCCGCCGACGAGGCTGGGCGAGTTCCTGGACATGGAGCGGCAGCACGCCGGCGCCGACTTCCTGTGCG
CCGGC------CCGCAGGAGCCGGACCCGCCTTCGGTGGCCGCGACGCCGCTGTTCGAGGACGGGAGGGTGCGCCCGCCG
CAGCAGCGCGCCGCCCCGCCGGAGGAGCGCGGGAGGTGGCGGCTGCAGCGGGCCGCGGAAGGGTCGTCCACGTCCTCGTC
GCTGGCCAGGCTCCCGGTGCTGCTCACCGGCATCTGCAGCGGCGGCGCTGGGTAG-------------------------
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>chr7D_1_TraesCS7D01G207500
ACGGTAATTTGCATCTATAAAATCGAGACAGTATGCAGTTGGTGGGATGGGGAGGGGGGAGTAAAAATATGTAGTTCATG
AGGAAACAAAGCTAGATTCGCCACGCAGCCGGTGAACAATAGGATAGGGACAGGGATATGGGCAGAACGGCGCATTTTTG
TGGGGCATGGGGACAATCCGATTGGAGCTGAAAAATCCAACCCCGGAATTCATTCCAAGTCAATCAATCGGCTGATTGGA
TCTAAAAGCCTCGACATTGCTAATCTTCAGCAAAGAAGAGACAACTAGACAATGACTGATCACAAAAAGCAGGACTAAAC
TCAAATCATCAGGGCTATCTTCTA-CTTTTTCAGCCTACGGCAAAGTTGGAAATGGAGCATCTTAGTATCTCACAGTGAG
CAAACAGTGCATTCAGTTCAATCCATTGTTCACCTATTGAAAACCTAGTTGTTGTCCCAATAGTGGCGTAATTGTA---C
TAGGGCGACTAGTCAAACGGAACATTCTGATGTCACTCATCAGTCAATCACAGGCTTGTTCAGATCAAGTCCTAGACC--
-----CATTTGAAATCCTGGTAACTTGCTGCAAAATTTACATGAAATTTATGCAAAATTTACACTTTATAGTAGCTACTG
GTTTAGTGACACAAGACCCCTTCCTATACAGAAGAAGATATCCAAATGTTGCAACGGAGCATGG------------TCAC
GGGCTGCATAATGTACATGCTCGTACGCTCGATGGAGCATATGCGCGCACAGTGGAGTCGTGCACTTGCGCTGTGGAGTC
ATAGAAGTTACCAAACGCCGACAAGTGCAGGGAGCCACCACCGCACCGGCACTGGGTCCTTACTCCGTAACCACGTCGCC
GTCACGGCACGCCCACACACCCCCAACCCCGATCAACTGCCCCCGGCCGAGC------CACAACTGCTTATAAACCCTTC
GTCTTCCTCCTCCCACCTTCACCATTCACCACCGCCCCTCGCCTC-----------TCCCCCTTTCCGCCGAAGCGAGCA
ATGGACCTCGACGACGACATGATACCCTACTACGCCTCCGGCGACTCCTCGCCGTCCTCCTCCGACCTCGACACCGAGGT
AGTTATCGAATTTCCTGGCTGGGTGCGGTTAGTTGCATTTGCTCCGTTTTCTTGCGTGCGCTGACGGAGTTGTTGGTTTT
GGTCTCTTGGCAGTCGACGGGGTCCTTCTTCCCGGACCGGAGCACGACGCTGGGGACGCTGATGGGCGTGTCGACGTTCG
GCGGCGCCGGTGTGCAGCGGCGGCTGACTCGGGCGGCGCCGGGGCAGGAGAGCGAGAGGCCGACGCGGGCGGCAACGGAG
GAGCGAGACGGGCGGCGCGCGGGCGGGTGGCGACGGAGGAGGCGGCGGCGGGGCGGGAGCTGGTGGCGGCTGTGCCGCGA
CGACGCCAGCGGGCCGCCGACGAGGCTGGGCGAGTTCCTGGACATGGAGCGGCAGCACGCCGGCGCCGACTTCCTGTGCG
CCGGC------CCGCAGGAGCCGGACCCGCCTTCGGTGGCCGCGACGCCGCTGTTCGAGGACGGGAGGGTGCGCCCGCCG
CAGCAGCGCGCCGCCCCGCCGGAGGAGCGCGGGAGGTGGCGGCTGCAGCGGGCCGCGGAAGGGTCGTCCACGTCCTCGTC
GCTGGCCAGGCTCCCGGTGCTGCTCACCGGCATCTGCAGCGGCGGCGCTGGGTAGT----GGCAGCACCCCGCAATTAAC
TCAT-TCCCGAGGGGCGCTTACGTGGTGTACGTGAAAGCGGACTGAATGCAGCATGATTCTTTTCTTCATCCCACGGAAC
GGATTCTCTCTGCCGCTCCATTTCTCCTTTCTTCGTTATA----AATAATAATTGTTGTTGCTCGGT-----CCCTCTGG
CCCAGTACAAAA-TTCTTCGTCCGATGCTTCGCCTCTTCTCTTTTCTTTCTCCTTTTGCTCTACTTTACTATCGAAAAGA
ATCGGAGGCAGTGCAACAAAAGTGACAAAACTATGTTCTCTTCTGCTCTTGTTGACTTGTTGTTACACCCGTCATTTTTA
TCTCAT-----GTACTCCTGTAAATACCAAAAGTAATAAGAGAATTTTACGCAAAGCTGCAGTGGGCAACGTAAAGACGC
TTGTACTACGTATT-TGTCTGTACTATTTCGTGCTGCCGTGCATGCATGCACCGCGGATTCGCAGCAGTAAGTGTATCAC
CAGTACAGTACATGCGCGGCACCGTGGCATTTTCTCTCCTGTCCGTGCAGCGCATGCGGACCGATCCCATCGCACGGACG
GAAGATACGCCACGTCGCCCGGCGATTCGAGTGCCAGCTGACCGA-------CGAGAGCGGACACGAAACCCCGACGCCA
TCGAACGAACCTTTGCACGGCGATCGACGCGATCCGCCGCATGGGTTCATCTCCATCGGTCGCTCTCGGAGTCAAGTTTG
CGGCGATCTGTGCCGCCGCGTCGGGCATGCGCGCGCCATGCCTGCCCTGCTGCCCCCACGCAGCAGCAGAATGAT-----
----------------------GAGGAGGAGGAGGAGATGTACCGGGAGTTGCTTCCGGTTTCAAGCAAAGCTTCAGATT
CCAGCAAGGGCCCAAAGGCCAGAAAAAGACGCGGCACCTGCACTGCGGCACATGACATGTCTACCAACGGACCAGGTCAC
ACATGTTTAACCTGAAGCT------TGAATTGGATGGCCGCTCTGGCAGTTCAAAGCTTGGAATGTTCAAGTAGAG
>chr7B_9
--------TTGCATCTATAAAATCAAGACAGTACGTAGTGGGTGGGGTGGGGAGTAGGAGT--AAAATATGTAGTTCATG
AGGAAACAAAGCTAGATTCGCCACGCAGCCGATGAACAATAGGATAGGGACAGGGATATGGGCAGAACGGCGCATTTTTG
TGGGGCATGGGGACAATCCGATTGGAGCTGAAAAATCCAACCCCGGAATTCATTCCAAGTCAATCAATCGGCTGATTGGA
TCTAAAAGCCTCGACATTGCTAATCTTCACCAAAGAAGAGACAACTAGACAATGACTGATCACAAAAAGCAGGACTAAAC
TCAAATCATCAGGGCTATCTTCTA-CTTTTTCAGCCTACGGCAAAGTTGGAAATGGAGCATCT--------CACAGTGAG
CAAACAGTGCATTCAGTTCAATCCATTGTTCACCTATTGAAAACCTAGTTGTTGTCCCAATAGTGGCGTAATTGTACTGC
TAGGGCGACTAGTCAAACGGAACATTCTGATGTCACTTATCAGTCAACCACAGGCTTATTCAGATCAAGTTGTAGACCCA
TCACCCGTTTAAAATGCTGGAAGCTCTGTGCAAATTTTACACGAACTTCATGCAAAATTTACACTTTATAGTAGCTGGTG
GTTTCGTGATACAAGACCCTTCCT-----AGAAGAAGAGATCCAAATGTTCCAAGGGAGCATCGATCGATGATCGATCAC
GGGCTGCATAATGTACATGCTCCTAGGCTTGATGGAGCATATGCGCGCACAGTCGAGTCGTGCACTTGCGCTGTGGAGTC
ATAGAAGTTACCAAACGCCGACAAGTGCAGGGAGCCACCACCGCACCGGCACTGGGTCCTTACTCCGTAACCACGTCGCC
GTCACGGCACGCCCACACACCCCCAACCCCGATCAACTGCCCCCGGCCAAGC------CACAACTGCTTATAAACCCTTC
GTCTTCCTCCTCCAACCCTCACCATTCACCACCACCCCTCGCCTC-----------GTCCCCTTTCCGCCGGAGCGAGCA
ATGGACCTCGACGACGACACGATACCGTACTCCCCCTCCGGCGACTCCTCGCCGTCCTCCTCCGATCTGGACACCGAGGT
AGTTATCCAATTTCTTGGCTGGGTGCGGTTCGTTGCATTTGCGTCGTTTTCTTGCGTGCGCTGACGGAGTTGTCGGCTTT
GATCTGTTGGCAGTCGACGGGCTCTTTCTTCCCTGACCGGAGCACGACGCTGGGGACGCTGATGGGCGTGTCTTCGTTCG
GCGGCGCCGGTGTCCAGCGGCGGCTGACTCGGGCGGCACCAGGGCAGGAGAGCGAGAGGCCGACGCTTGCGGCAACGGAG
GGGCAGGAGGGGCGGCGCGCGGGCGGGTGGCGACGGAGGAGACGGCGGCGGGGCGGGAGCTGGTGGCGGCTGTGCCGCGA
CGACGCCAGCGGGCCGCCGACGAGGCTGGGCGAGTTCCTGGACATGGAGCGGCAGCACGCCGGCGCCGACTTCCTGTGCG
GCGGCGGCGGCCCGCAGGAGCCGGAGGCGCCTTCGGTGGCGGCGACGCCGCTGTTCGAGGACGGGAGGGTGCGCCCGCCA
CAGCAGCGCGCCGCCCCGCCGGAGGAGCGCGGGAGGTGGCGGCTGCAGCGGGCGGCGGAAGGCTCGTCCACGTCCTCGTC
GCTGGCCAGGCTCCCGGTGCTGCTCACCGGCATCTGCAGCGGCGGCGCAGGGTAGT----GGCAGCACCCCGCAATTAAC
TCAT-TCCCGAGGGGCGCTTACGTGGTGTGCGTGAAAGCGGACTGAATGCGGCATGATTCTTTTCTTCATCCCACGGAAC
GGATTCTCTCTGCCGCTTCATTTCTCCTTTCCTCGTTATA----AATAATCATTGTTGTTGTTCGGT-----CCCTCTGG
CCCAGTACAAAA-TTCTTCGTCCGATGCTTCGCCTCTTCTCTTTTCTTTCTCCTTTTGCTCTACTTTACTATCGAAAAGA
ATCGGAGGCAGTGCAACAAAAGTGACAAAACTATGTTCTCTTCTCCTCTTGTTGACTTGTTGTTACACCCGTCAGTTTTT
ATCTCATGTAC----TCCTGTAAATATCAAAAGCAATAAGAGAATTTTACGCAAAGCTACAGTAGAGAAAGTAAAGTCTC
TTGTACTA-GTATT-TATCTGTACTATTTCGTGCTGCCGTGCATGCATGCACCGCGGATTCGCAGCAGTAAGTGTATCAC
CAGTACAG-----GCGCGGCGCCGTGGCATTTTCTTCCCTGTTCGTGCACTGCACGCGGCCAGATCCCATCGCACGGACG
GAAGATACGCCACGTCGCCCGGCGATTCGAGTGCCAGCTGACCT------GCCGAGAGCAGACACGAAACCCCGACGCCA
CCGAACGAACCTTTGCACGGCGGTCGACGCGATCCGCCGCATGGGTTCGTCCTCATCGCTCGCTCTCGGAGTCAAGTTTG
CGGCGATCTGTGC---CGCATCGGGCATGCGCGCGCCATGCCTGCTCTGCTGCCCCCACGCAGCAGCAGAATGAT-----
----------------------GAGGAGGAG------ATGTACACCGAGTTGCTTCCGGTTTGAAGCAAAGCTTCAGATT
CCAGCAAGGGCCCAGAGGCCAGAAAAAGACGCGGCACTTGCACTGCTGCACATGACATGTCTACCAACGGACGAGGTAAC
ACATGTTTAACCTGAAGCT------TAAATTGGATGGCCGCTCTGGCAGTTCAAAGCTTGGAATGTTCAAGTAGAG
>chr7A_75
--------------------------------------------------------------------------TTCATG
AGGAAACAAAGCTAGATTCGCCACGCAGCCGGTGAACAATAGGATAGGGACATGGATATGGGCAGAAGGGCACATTTTTG
TGGGGCATGGGGACAATCCGATTGGAGCTGAAAAATCCAACACCGAAATTCATTCCGGGTCAATCAATCGGCTGATTGGA
TCCAG-AGCCTCGACATTGCTAATCTTCGCTAAAGAAGAGACAACTAGACAATGACCGATCACGAAAAGCAGGACTAAAC
TCGAATCATCAGGGCTAGCTTCTGCCTTTTCCAGCCTACGGCAAAGTTGGAAATGGAGCATCT--------CACAGTGCA
CAAACAGTACATTCAGTTCAACGCATTGTTCATCTGTTCAAAACCTAGTTGTTGTCCCAATAGTGGCGTAATTGCACTGC
TAGAGCGACTAGTCAAACCGAACATTCTCATGTCACTTATCAGTCAACCACAGCCATATTCAGATGAATTTGTAGACCCA
TCGCCCATTTGAAATGCTGGAAACTTGGTGCAAATTTTACATGAACTTTATGCAAAATTTACACTTTGTAGTGGCTGGTG
GTTTAGTGACACGAGATCCCTTCCTATATGGAAGAAGAGATCCAAATGTTCCAAGGGAGCATCGATCGAT-------CAC
GGGCTGCATAATGTACATGCTCCTAGGCTTGATGCAGCATATGGGCGCACAGTGGAGTCGTGCACTTGCGCTGTGGAGTC
ATAGAAGTTACCAAACGCCGACAAGTGCAGGGAGCCACCACCGCACCGGCACTGGGTCCTTACTCCGTAACCACGTCGCC
GTCACGGCACGCCCACACACCCCCAACCCCGATCAACTGCCCCCGGCCGAGCACCACGCACAACTGCTTATAAACCCTTC
GTCTTCATCGTCCCCGCA-------TCACCACCGCCCCTCGCCTCTCGCCCCTTCCGTCCCCTTGCCGCCGGAGCGAGCA
ATGGACCTCGACGACGACATGGTGCCGTACTCCCCCTCCGGCGACTCCTCGCCGTCGTCCTCCGACCTCGACACCGAGGT
AGTTATCGAATTTCTTGGCTGGGTGCGGTTAGTTCCAT-------------TTGCATGCGCTGACGGAGTTGTTGGTTCT
GGTCTGTTGGCAGTCGACGGGGTCTTTCTTCCCTGACCGGAGCACGACGCTGGGGACGCTGATGGGCGTGTCGACGTTCG
GCGGCGCCGGTGTCCAGCGGCGGCTGACTCGGGCGGCGCCGGGGCAGGAGAGCGAGAGGCCGACGCGTGCGGCAACGGAG
GAGCGAGACGGGCGGCGCGCGGGCGGGTGGCGACGGAGGAGGCGGCGGCGGGGCGGGAGCTGGTGGCGGCTGTGCCGCGA
CGACGCCAGCGGGCCGCCGACGAGGCTGGGCGAGTTCCTGGACATGGAGCGGCAGCACGCCGGCGCCGACTTCCTGTGCG
GCGGCGGCGGCCCGCAGGAGCCGGAGGCGCCATCGGTGGCGGCGACGCCGCTGTTCGAGGACGGGAGGGTGCGCCCGCCG
CAGCCGCGCGCCGCGCCGCCGGAGGAGCGCGGGAGGTGGCGGCTGCAGCGGGCCGCGGAGGGCTCGTCCACGTCCTCGTC
GCTGGCCAGGCTCCCGGTGCTGCTCACCGGCATCTGCAGCGGCGGCGCGGGGTAGGCAGGGGCAGCACCCCGCAATTAAC
ACCCCTCCCGAGGGGCGTTTACGCCGCGTACGTGAAAGCGGACTGAATGCAGCATGATTCTTTTCTTCACCCCACGGAAC
GGATTCCCTCTGCCGCTTCATTTCTCCTTCCCTCGTTATTAAATAATAATAATTGTCGTTGTTCGGCGCTCCCCCTCTGG
CCCAGTACAAAAATTCTTCGTCTGATGCTTCACTTCTTCTCT-----------TTTTGCTCTACTTTACTATCGAAAAGA
ATCGGAGGCGGTGCAACAAAAGTGACAAAGCTATGTTCTCTTTGCTCATTTTTCTC----TGTTACACCCGTCAGTTTTT
ATCTTATGTACGTACTTGTGTAAATACCAAAAGTAATAAGAGAATTTTACGCAAAGCTGCAGTGGGCAAAGTAAAGTCGC
TTGTAGTA-TTAGTCTGTATGTACCATTCGCGGCCGCCGTGCATGCATGCACCGCGGATTCGCGGCAGTAAGTGTATCGC
CAGTACAG-----GCGCGGCGCCGTGGCATTTTCTCTCCTGTCCGTGCACTGCCCGCGGCCCGATCCCATCGCACGGACG
GAAGATACGCCACGTCGCCCGACGATTCGAGTGCCAGCTGAGAGCTGACCGCCGAGAGCAGACACGAAACCCCGACGCCA
TCGGACGAACCTTTGCACGGCGGCCGACGCGATCCGCCGCATGGGTTCATCTTCGTCGGTCGCTCTCGGGATCAGGTTAG
CGGCGATCCGTG----------------------GCCATGCCTGCTCTGCTGCCCCCACGCGGCAGCCGAACGATGATGA
TGATGATGATGAGGAGGAGGAGGAGGAGGAGGAGGAGATGTATCCGGAGTTGCTTCCGGTGTGAAGCAAAGCTTCAGATT
CCAGCAAGGGCCCAAAGGGCAGAAAAAGACGCGGCACCTGCACTGCGGCACATGACATGTCCACTAGCGGACCAGGTCAC
ACATGTGTAAGTTCAACCTCAAGCTTAAATTGGATGGCCGCTCTGGCAGTTCAAAGCTTGGAATG-----------
>SNPs
SSSSSSSS----------------S--------S-S---S------S-------SS--SSSSS-----------------
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-----------------------------S--------------------------------------------------
---------------------------------------------------------------SSSSSSSS---------
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-------------------------------------S---------S---------S------------SS--------
---------------S----S------S------S----------S------------------------------SS--
----------------------------S---------S-----------S---S-------S-----------------
----------------------S--S---S--------------------------------------------------
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-----------------S--------------------------------------SS-------------S--------
--------------------------S----S-S----------------------------------------------
--------------S---------------------------SS------------------------------------
-----S------------------S--------S----------------------------------------------
-------------S-----------------------------------------------------S------------
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S------------------------SS-------------S---------------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------------S-------------------------------
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-----------------S-------------S-----------------------------S------------------
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--------------------------------------------S-----------------------------S----S
SSSSSS---------------------------------------------------------------S------S---
--------S-----------------------------------------------------------------------
--------SSSSS-------S----------------------------SS---S----S--------------------
--------------------------------------------S--------------S--------------------
----------------------S-----------------------------S---------------------------
-------------SSS---S-------------------------S----------------------------------
--------------------------------------------S-----------------S-----------------
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--------------------------S-------------------------------------------------
>forward_47
--------------------------GACAGTATGCAGTTGGTGGGA---------------------------------
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>reverse_1135
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--------------CTGGCTGGGTGCGGTTAG------------------------------------------------
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>forward_1067
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-------TCGACGACGACATGATACCC-----------------------------------------------------
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>reverse_2605
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--------------------------------------------GGGAGTTGCTTCCGGTTTCA----------------
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