>input_sequence_71658
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----------ATGTTGCTG------GGGATGTACCCGCACAGCCCAACTGGCGAGTACAGATTATTGTTGTACT------
------TGAGTGATGCAAATTTGGGA--------------------CAC---------GATGGCTCCTAT-----GTCTT
TTCATTAGGCTCCGACCAGCCGCCGAGGTACAAAGGGTAT------CCCAATGCATTTGAATTGATGTTCACCAGACCC-
--ATTTTGTTCCGTGGTAACCTGCATTGGCAAATTCTA------GAGAGCGCGGGCAACATGTTAAAGGTATTCGACACC
ACCGCTGAGTCGTTCCGGCAGATGCGTGCTCCGCCTCTTCCTTAC---------------------------------CC
CGCTCACCTGTTTGAGATGGATGGAATGCTCAGCATGTCCAGCTTTGATGAGGCAACCAACACAACCATTGATATCTGGA
TGTC---ACAAGACTATGACAACGAGCTATGGGCCTTGAAATACCTGGTTAAATTACCAGTTGCAGATCTCACTGTGCAG
TTTGGAAAGTTTGTTGAGTATTGGAATTTCATGGTCACTTCTAGGGATGGTGGTGTGTCCATGCTGGTCAAATTTGGTGA
GTGGCTACTTCAGTTTGACATCAATGGCAAGTTGATTGCCAGTTT---CCATTTTAGAGGCCTCGTTCCTGCTGAACATT
GTCTCAAGCAAACTCTTGTTCAGCATACCTTCTTTCCAATGCTACAGGGTTATGTTGTGAACAATTCATCTTTCATCGGA
TGTTAG--------------------------------------------------------------------------
--------------------------------------------------------------------------------
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------------
>chr3D_1_TraesCS3D01G464400
ATAGCAGTTCAACTACCAAAGGATCGCGTTCCTTTTTTGTGGTTTCATTTTAACTGCAGTGGAATAGATGGAAATTGCTT
TTTTTACAGAGATAGCACTTCAAAATTGTGCTTGAAAATATTTAATGGAGATAAACTTGAATATTTTTTGAAAGGAAGTT
CTAGAAAAGTTGCTCGGTCCAACTAAAATACAGATTAGATATTAATTAATTCGTCACTTTGCATTTTCGCAATAAATGTT
TTTTTTGCAAGAGATAGTTCTTGGAAAAAATGGGTTGCACATATGGTAAATTTTAAAAACAACTTTCCCTAACTATTTTC
TTAACTTAATTAGGCCTGAACTTTGATTTTGCATTGGGCCCCCAAATTCTCAGGTACGGCCCTGTGGCCATGCTCTGGTC
TGATGGAACCCTAGGGATCAGATCCCTGGTGGTTCCCGTATATATATAT-----------------ATATATATCCTATC
TGCACTAGAGCTCCATCGCCCCCGCCGTCACTTCCACTTCACACCATTCCTCTTGCTTTGCTATCGAGATCCAGATTGAG
CCCCTGGCCAGCCGGCGACCATGGCGGAGGCTGCACCGGTTCCCCTCCACCGCAACCTCCCGGACGAAATCTCCATCTGG
GAGATCCTCGTCCGCCTGCCCCCCAAAGCCCTCCTCCGCTGTCGTGCCGTCTGTCGTGCC------------TGGCGCGG
TGCCACCTCCACCCACGACTGCCTCCTCGCTCACCACGCCCGCCAGCCCGCCCTCCCCCTCTTCTACGCCTACAATTTCA
AGTGCGACGGAGACCGCGTCAAGTTCCTAGACATCATTCCCTTCGACCACCGA------GTAGGGGCCGCCGCCGCCGAC
CGGCTCCAGTCCGTCGCGCAAATTG------ACCTCTCCTATCCTGGTATGGAGGTCTCCTGCGATGGTCTCCTCGTCTT
CTCCGTAGGCGAA------AACAGAAATTTGTCCGTCTACAATCCGGCA--ACTCGTCAATATGCTCCACTCCCACAGAT
TGCTGG-TTCATGTTGCTG------GGGATGTACCCGCACAGCCCAACTGGCGAGTACAGATTATTGTTGTACT------
------TGAGTGATGCAAATTTGGGA--------------------CAC---------GATGGCTCCTAT-----GTCTT
TTCATTAGGCTCCGACCAGCCGCCGAGGTACAAAGGGTAT------CCCAATGCATTTGAATTGATGTTCACCAGACCC-
--ATTTTGTTCCGTGGTAACCTGCATTGGCAAATTCTA------GAGAGCGCGGGCAACATGTTAAAGGTATTCGACACC
ACCGCTGAGTCGTTCCGGCAGATGCGTGCTCCGCCTCTTCCTTAC---------------------------------CC
CGCTCACCTGTTTGAGATGGATGGAATGCTCAGCATGTCCAGCTTTGATGAGGCAACCAACACAACCATTGATATCTGGA
TGTC---ACAAGACTATGACAACGAGCTATGGGCCTTGAAATACCTGGTTAAATTACCAGTTGCAGATCTCACTGTGCAG
TTTGGAAAGTTTGTTGAGTATTGGAATTTCATGGTCACTTCTAGGGATGGTGGTGTGTCCATGCTGGTCAAATTTGGTGA
GTGGCTACTTCAGTTTGACATCAATGGCAAGTTGATTGCCAGTTT---CCATTTTAGAGGCCTCGTTCCTGCTGAACATT
GTCTCAAGCAAACTCTTGTTCAGCATACCTTCTTTCCAATGCTACAGGGTTATGTTGTGAACAATTCATCTTTCATCGGA
T--GTTAGCTGTCCAGTGAGGCAGCGCTTCTAAATGGCCTAGCGGTATCCTTATGAGCTACAATATCGAGTTTGAGCCCG
CAGGCTTTTCTTTGTTGATGCATGTCAAGTTGTGATCAAGAAGCTCTCACTGTTATGTGGTTGCCTGAAATCTATGCATG
TTTTGGTACCAAATTACCAAGTCATTTTGGTGTGTGTTTGAAGGATGTGCTCCGGTCTGCCTCATGTCTCTGTTGTACTC
CTATTTA------------------TTAGTTAGCAATCTACATGCCTCATGTTTCTGTTTCTTGAACTGGAGGATTGACT
TTACCTTTTCTCTTGGTCTTC-GTTTTA---CATGAAATTATGTACTGCTC-TACTCAAAGATGAATTCTTATTATTTTG
CAATCTTGATGTGTCTCATGTTTCTAAGTTCTGTTCTAGCTGACCACTGAATGTGAAAATTGAATGTGGCAGATTGATTA
TC--CTCAATTTCTTAACTTGCTAATATACTCATGAGCTGC--TATGTATAAACTGGGTCCACCTATGGGCCGGCTAGTT
TCTTTATTATGATCAAGAAGCTATCACTATTACATTGTTGCATAAATTTCGTGTGTGTGAATATCCTATTGGGCCGAATG
GCTACCAGTTCTGTTGTGGTGGGTTATGAAATTAGGACATATTATCCTCTTTAATGACTGGAAAGTTGAACTTGGGTTTT
TAAAGAGCTTTAAGCACCGCTCGTTGAAGTGCATGATTGCATTATAGTCAACTTAGAGAAATGTTCGTTCATTCCTCTTC
ATGCATCTGG-----------------TTAGATGTTAAAAAGCTATGCTATAAATCTGTCTTTGCTGTTGCGTTGTTTGT
GATTAAGCTTATCATGGTCAGGCTGGGGTACAAGATTGTTTTCTCCTTTAGACTCTGTAACTACCAGCCATGTTCATTCC
CTCTGATCAGTGCAAGACCGTCTCGAGTACCATTGGTCTCAAGGAGATTGTCTCAAGTTCACTCTGATCATTTGTTATTG
GATGTGCCATTG
>chr3A_1
ATAGCACTTCAAGTACCAAAGGATCGCGTTCCTTTTTTGTGGTTTCATTTTAACTAAAGTGGAATAGATGGAAATTGCTT
TTTGTATAGAGATAGCGCGTCAAAATTGTGCTTGAAAATATTTAATGGAGATAAACTTGAAGATTTTTGGAAAGTAAGTT
CTAGAAAGATTGCTCGGTCCAACTACAATACATATTAGATATTAATTAATTCATCACTTTGCATTTTCGCAATACATGTT
TTTTTTGCAACAGATAGTTCTTGGAAAAAATGTGTTGCTCATATGGTAAATTTTAGAAACTTCTTTCCCTAACTATTTTC
TTAATTTAATTAGGCCTGAACTTTAATTTTGCATCGGGCCCCCAAATTCTCA-GTACGGCCCAGTGGCCATTCTCTCGTC
TGATGGAACCCTAGGGATCAGATCCCTGGTGGTTTGTCTCAAAAAAAAAGATCCCTGGTGGTTCCCATATATATTCTATC
TGCCCTAGAGCTCCATCGCCCCCGCCGTCACTTCCACTTCACACCACTCCTCTTGCTTTGCTATCGAGATCCAGATTGAG
CTCCCGGCCAGCCGACGACCATGGCGGAGGCTGCACCGCTTTCCCCCCACCGCAGCCTCCCGGAAGAAATCTCCATCTGG
GAGATCCTCGTCCGCCTGCCCCCCAAAGCCCTCCTCCGTTGTCGTGCCGTTTGTCGCACC------------TGGCGCGG
TGCCACCTCCACCCACGACTTCCTCCTTGCTCACCATGCCCGCCAGCCCGCCCTCCCCCTCTTCTACGCCTCCAATTTCA
AGTGCGACGGCGACCGCGTCAAGTCCCTAGACATCATTCCCTTCGACCACCGA------GTAGGGATCGCCGCCGCCGAC
CGGCTCCAGTCCGTCGCACGAATTG------ACCTCTCCTATCCCGGTCTGGAGATCTCCTGCGATGGTCTCCTCGTCTT
CTCCGTAGGCGAA------AACAGAAATTTGTCTGTCTACAATCCCGCA--ACTCGTCAATATGCTCCACTCCCACAGAT
TGCTGGCTTCATGTTACTG------GGGATGTACCTGCACAGCCCAACCGGCGAGTACAGATTATTGTTGTACT------
------TGAGTGATGCAAATCTGGGA--------------------CACA---------ATGGCTCCTAT-----GTCTT
TTCAGTAGGCTCCGACCAGCCGCCAAGGTACAAAGGGTAT------CCCAATGCATTTGAATTGATGTTCACCAGACCC-
--ATTTTGTTCCGTGGTAGCCTGCATTGGCAAATTCTA------AAGAGCGCGGGCAACATGTTAAAGGTATTCAACACG
ACCGTTGAGTCATTCCGGCAGATGCGTGCTCCGCTTCTTCCTTAC---------------------------------CC
CGCTCACCTGTTTGAGATGGATGGAATGCTCAGCATGTTCAGCTTTGATGAGGCAACCAACACAACCATTGATATCTGGA
TGTC---ACAAGACTATGACAATGAGGTATGGGCCTTGAAATACCGGGTTAAATTACCAGTTGCAGATCTCACAGTGCGG
TTTGGAAAGTTTGTTGAGTATTGGAATTTCATGGTCACTTCTAGGGATGGTGATGTGTCCATGCTGGTCAAATTTGGTGA
GTGGCTACTTCAGTTTGACATCAATGGCAAGTTTAGTGCCAGTTT---CCATTTTAGAGGCCTTTTTCCTGCTGAACATT
GTCTCAAGCAAACTCTTGTTCAGCATACATTCTTTCCAATGCTACAGGGTTATGTTGTGAAAAATTCGCCTTTCATCGGA
TGTGATAGCTGTCCAGTGAGGCAACGCTTCTAAACGGCCTAGCGGTATCCTTATGAGCTACAATATCGAGTTTGAGCCCG
CAGGC--TTCTTTGTTGATGCATG--AAGTTGTGATCAGGAAGCTCTCACTGTTATGTGGTTGCGTGAAATCTATGCATG
TTTTGGTACCAAATTACCAAGTCATTTTGGTGTGTGTCTGAAAGATGTGCTCCGGTCTGCCTCATGTCTCGGCTATACTC
CTATTTA------------------TTAGGTAGCAATCTACATGCCTCGTGTTTCTGTTTCTTGAACTGGAGGATTGACT
TTACCTTTTTTCTTGGTCTTC-GTTTTATTCCATGAAATTATGTACTGCTC-TTCTCAAAGATGAATTCTTATTATCTAG
CAATCTTGATGTGTCTCATGTTTCTAAGTTCTGTTCTAGCTGACCATTGAATGTGAAACTTGAATGTGGCAGATTGATTA
TCCTCTCAATTTCTTAACTTGCTAATATCCTCATGAGCTGC--TATGTATAAAATGGGTCCACCTATGGGCTGGCTAGTT
TCTTTATTATGATCAAGAAGCTATCACTATTACATTGTTGCATAAATTTCGTGTGTGTGAACATCCTATTGGGCCGAATG
GCTACCAGTTCTGTTGTGGCTGGTTATGAAATTAGGACATATTATCCTCTTTAATGACTGGAAAGTTGAACTTGGGTTTT
TAAAGAGCTTGAAGAACTGCTCGTTGAAGTGCATGATTGCATTATAGTCAACTTAGAGAAATGTTCGTTCATTCCTCTTC
ATGTATTCATTGCTTCTGGTTAGATACTTAGATGTTAAAAAGCAATGCTATAAACCTGTCTTTGCTGTTGCGTTGTTTGT
GATTAAGCTTATCATGGTCAGGCTGGGGTACAAGATTGTTTTCTCCTTTAGACTCTGTAACTACCAGCCATGTTCATTCC
CTCTGATCAGTGCAAGACCGTCTCGAGTACCATTGGTCTCAAGCAGATTGTCTCAAGTTCACTCTGATCATTTGTTATCG
GATGTGCCATTG
>chr3D_479
--------------------------------------------------------------------------------
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---------------TCTCCGCCGCCGTCACTGCCACTGC-CACCACTCCTCTTCCACTGCTCGAAACGAGAGCTC----
-------CCAGCCGGCGGCCATGGCGGAT------CCTCCTGCTCTCCTCCCTGGCCTCCCCGATGAGATCTCCATCTGG
GAGATCCTCCTCCGCCTGCCCCCAAAATCCCTCCTCCGCTGCCGC------------GCC------------TGGCGAGG
CGCCACCTCCACCCGCGACTTCCTCCTCGCCCACCACGCCCGCCAGCCCACCCTCCCCGTCCTCCGTGGCTACAACAACG
TCA------A------CGGCCTGTCCCTGGATGTCACCCTCTTGGACCACCGGGC------GGGGGTCGCCGCCGCCGAC
CGGCTCCAGTCCGTCGCGC------------------------------TGGAGAGCTCCTGCGACGACCTCCTTGCCCT
CTCCATCGACCAC------AACT---ACTTTTGCATCTACAACCCAGCAACACTCGTCAGTATGCTCCCCTCCCGCTGCT
TTCTCAATTCCATCTCATGGA------GATGTACCCGCACAGCACTACCGGCGACTACCGACTATTG-------------
--------------------CTCTGGCACCTA---AGGCTAAACCTCAG---------GATGGCGCCTAC-----ATCTA
CACGTTAGGCTCCAGCCAGCCGCCTAGGCGCCTAGACATACCGTGCCCCCATGTGGACCAAGTGATATGGGCCTCCGGGT
TTATCATGTTCCATGGTAGCCTCCATTGGTGCATAGA------------------CACCATGATAATTGCATTTGACACC
ACCACCGAGTCGTTCCGGCAGATGCGCATTCCGGTTTATCCTGAC---------------------------------GG
CGCTGACCTGTTTGAGATGGATGGAATGCTCAGCATGTCCATCTTCAATGATGCA---ACGACATCCATTGATATCTGGA
TGAC---ACGGGACTATGAAAGTGAGATCTGGGCCTTAAAATACCAGGTTGAATTGCCGGTTGCAGAGCTTACCAATCAG
TTTGGAAAATTCGACGAACTTTGGTGGCTGGTTGTCATGTCTTCGGAAGGTGATGTGCTTGTGCTGGTCAAATTTGGTGA
GTGGGTACTTCAGATTGACGTCGATGGAAAGTTGGTTGCTAGTAT---ACAGTGCGGAGACCTCGGTCCTACTCGACTTT
GATTCAAGCAAACTCTAGTTTCACATACATTCTTTCCGACACTAGAGGGTTATGTTGTGAACACTTTGCCTTTCAT----
--------------------------------------------------------------------------------
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------------
>chr3D_540
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----------------------------------------------------------------------------TGAG
CTCCCGACCAGCCGGCGACCATGGCGGAGGCCTCACCGCCTCCTCTCCACCGCGGCCTCCCCAACGAGATCGCCATCTGG
GAGATCCTCGTCCGCCTGCCCCCCAAACCCCTCCTCCGCTGCCGC------------GCCGTCTGCCGCATCTGGCTTTG
CGCCACCTCCACCCGCGAATTTCTCCTCGCCCACCACGCCCGACAGCCCTCCCTCCCCCTCCTCTACAGCTACAACTACA
ATTGCAGCGGCG---GCCTCGAGTCCCTAGACATCATCCCCTTCGACCACCGGGTGCGGGTAGGGGTCGCCGCCGCCGAC
CGTCTCCAGTCCGTCGCGCGAATTGGTGACCCTTCCGCCCGCCCATAC------ATATCCTGCGATGGCTTCCTCGTCCT
CTTAATCGGCCAA------GAACACTTAT-----------------GCA--ACCCGTCAATGTGCTCGCCTCCCAAGTCT
TACCACCGGCACCCACCAACCCGCCGGAATGTACCCGCACGGCCCAACCGGCGAGTACAGGATACTG-------------
--------------------CTGGCT--------------------CCTGATGATCCAGATGACTCC--TACCAGGTCTA
CACACTAGGCCCCAGCGAGCCGCCCAGGCACATAGACATAGAGGGCCCCAATGTGGAGGACTTGTCACCCAGTACACATC
---TCATGTTCCGTGGTAGCCTGCATTGGTGCATAGG------------------CAGCATTATACATGTATTCAACACC
ACAACTGAGTCCTTCTGGCAGATGCTCGCTCCAGATGTTCCTCACAGTGTTGACCGGTATGTGATGGATATACTTTATGG
CGCTGTCCTGTTTGAGATGGATGGAATGCTTAGCATGCCCATTCTTACTGATGAA---TTTACCAGCATTGGTATCTGGG
CTAT---GCAAGACTATGAACATGAGGTCTGGACCTCAAAATACCGGGTCAAATTGCCACTTGCGGACCTCACCGTGCAG
TTTGGAAAGTTTAACCCATTTCTTCATGGGGTGCCCGCTTTTTGGGACGGTGACGTGATCATCCTGGTCCAGTTTGGTGA
GTGGCTACTTCAATTTGACATGGATGGCAAGTTGGTTGCTAATTTGCGCCATTGCAGAGGCCTCTTTCCAACTCGACATC
AACTCAAGCAAACTCTTGTTCAGCATACCTTCTTTCCGACACTAGAGGGTTATGTTGTCAATGCTTCACCTTTCATC---
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------------
>chr3D_551
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-------CCAGCCGGCGGCCATGGCGGAT------CCTCCTGCTCTCCTCCCTGGCCTCCCCGATGAGATCTCCATGTGG
GAGATCCTCCTCCGCCTGCCGCCCAAATCCCTCCTCCGTTGCCGT------------GCCGTCTGCCGCGCCTGGCGAGG
CGCCACCTCCACCCGCAACTTCCTTCTCGCCCACCACGCCCGCCAGCCCACCCTCCCCATCCTCCGCGGCTACAACAACG
TCA------A------CGGCCTGTCCCTAGATGTCACCCTCTTCGACCACCGGGC------GGGGGTCGCCGCCGCCGAC
CGGCTCCAGTCCGTCGCGCGGCTTGGAGTTGGGCACGCCAACTTCACTCTGGAGAGCTGCTGCGACGGCCTCCTCGCCCT
CTCCATCGACGAC------GACT---CCTTGTGCATCTGCAACCCAGCA--ACTCGTCAGTATGCTCCCCTCCCGCTGCT
TTCTCAATTCCATCTCATG------GGGATGTACCAGCACACCCCTACCGGCCACTACCGACTATTG-------------
--------------------C--TGGCACCTAAGGAGGCTAAAGCTCAG---------GATGGCGCCTAC-----ATCTA
CACCTTAGGCTCCAGCCAGCCGCCGAGGCTCATAGACATACAGTGCTCCCATGTGGACCAAGTGATATGGGCCTACGGAA
TTGTCATGTTCCATGGTAGTATCCATTGGTGCATAGA------------------CAACATGATAATTGTATTTGACACA
ACCGCCGAGTCGTTCCGGCAGATGCGCACTCCGGTTGATCCTGAC---------------------------------GG
CGCTGACCTGTTTGAGATGGATGGAATGCTCAGCATGTCCATCTTTAATGATGCA---AAAACATCCATTGATATCTGGA
TGGC---ACGGGACTATGAAAGTGAGATCTGGACCTTGAAATACCGGGTTGAATTGCCGCTTGCAGAGCTTACCAATCAG
TTTGGAAAATTCGACGAACTTTGGTGGCTGGTGATCATGTCTGATGAAGGTGATGTGCTTGTGCTGGTCAAATTTGATGA
GTCGGTACTTCAGATTGATATGGATGGCAAGTTGGTTGCTAGTAT---ACATTGCGGAGACCTCGGTACTACTCGACTTT
GGTTCAAACAAACTCTAGTTTCACATACATTCTTTCCAACACTAGAGGGTTATGTTGTGAA-------------------
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>chr3D_554
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----------GCCGGCGACCTTGGCGGAGGACACACCACCTCTCCTTCACCGTTGCCTCCCGGACAAGATCTTCATCCAG
GAGATCCTCGTTCGCCTGCCCCCAAA-GCCCTCCTCCGCTGTTGC------------GCCGTTTGCCGCGCCTGGCGCGG
CGTCACCTCCACCCGCGACTTCCTCCTCACTCGCCACGCCCGCTAG-CCCCCCTCCCCCTCTTCTACGCCTACAATCAGA
AATGCGCCCGCGGCCGTATCAAGTCCCTAGACATCATTCCCTTCGACCACCGA------GTAGGGGTCACTGCCGCCGAC
CGGCTCCAATCCGTCGCGTGAATTG------GCCTCTCCTATCCCGGTCTGGAGGCCTCCTGCGACAGTCTCCTCGTCCT
CTCTGAAGGTGAAGGCAACAACAAAAATTTGTTCATCTGCAATCCGGCA--ACTCGCCAGTATGCTCCACTCCGACAGCT
TTCTGGCTTCATGTTTTTG------GGGATGTACCCGCACAGCCCAACCGGCGAGTACATATTATTGCTGTACT------
------TTAGCAATGTAAAACTGGCA--------------------CCTGG---------TGGCTCCTAT-----GTCTT
TTCATTAGGCTCCGGCCAGCCGCCGAGGTACACAGGTTAT------CCTGATGCATTTGAATTAATGTTCACCTGACCC-
--ATTTTGTTCCGTGCTAACCTGCATTGGCAAATTCTA------GAGAGCGCAGGCAACATGTTAAAGGTATTTGACACC
ACTGCTGAGTCATTCCGACAGATGCGTGCTCTGCTTCTTTCTTAC---------------------------------CC
CGCTCACCTGTTTGAGATGAATGGAATGCTCAGCATGTCCATCTTTAATGAGGAAACCAACACAACCATTAATATCTGGA
TGTC---ACATGACTATGACAACGAGGTATGGGCCTTGAAATACCAGGTAGAATTGCCGGTTGCAGATCTC-----GCAG
TTTGGAAAATTTGTCGAGTATTGGAATTTGGTGGTCGCTTCTAGGGACGGTG-TGTGTTCATGTTGGTCAAATTTGGCGA
GTGGCTACTTCAGGTTGATATCAATGGCAAGTTGATTGCAGGTTT---CCATTTCAGAGGCCTCATTTCTACTGAACATC
GTCTCAAGCAAACTCTTGTTCAGCATACCTTCTTTCCGACGTTAAAGGGTTGTGTTGTGAACGATTCACCTTTCATCTGA
TCGGATAGCTACCTAGTGAGGTGGCGCTTTTGAACGGCCTATCAGTATCCTTATGAACTGCAGTATCGAGTTTGAGCCCG
GAGGC--TTCTTTGTTGATGCATGTAAAGTTGTGATCAAGAATCTCTTGATGTTATGTGGTTGCGTGAAATCTATGCATG
TTTTGGTACCAAATTACCAAGTTGTTCTGGTGTGTGTTTGAAAGATGTGCTCCGGTCTGCCTCTTGTCTCTGTTGTACTC
CTCTTTATTAGTTTGCAATCCTATTTTAGTTAGCAATCTGCATGCCTCATGTTTCTGTTTCTTCAACTGAAGGATTGACT
TTGCCTTTTGTCTAGGTCTTTTGTTTTATTCCCTATAATTATGTATTGCCTGTTCTCAAAGATGAATTCTTATTATTTAG
CAATCTTGACGTGTCTCATTTTTCTATGTTTGGTTCTAGGCTTCTAGCTGACC-----ATTGAATGTGGTAGATTGATTA
TCCTCTCAATTTCTTAACTTGCTAATATCCTCACGAGCTGCAATATGTATAAGTTGGGTCCACCTATGAGCTAGTTAGTT
TCTTTATTATGATCAAGAAGCTATGACTATTACATTGTTGCATGAATTTTGTGTTTCTGAATATCCTTTTAGCCTGAATG
GCTACCAGTTCTGTGGTAGCCGGTGATGAAATTAGGGCTGATTATCCTTTTTGATGATTAGCAAGTTGAACCTTGGGTTT
CAAAGAGCTTGAAGCACTACTCGTTAAAGTGCATGAATTCATTATAGTCATCTT--------------------------
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------------
>chr3A_580
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------------------------------------CGGATCCTCTCCAACGCAGCCTCCCCGACGAGATCTCAATCTGG
GAGATCCTCGTCCGCCTCCCTCCCAAAGCTCTCCTCCGCTGCCGC------------GCCGTGTGCCGCGCCTGGCGCAG
CGCCACCTCCACCCGCGACTTCCTCCTTGCTCACCACGGACACCAGCTCACCCTTCCCCTCCTCTACGGCTGCACCAACC
TCGGCGTCCA------AGGCGAGGTCCTAGACATCATTCCCTTCGACCACCGCCC------AGGGCTAGCCGCCGCCGAC
CAGCTTCAGTCCGTCGCGCGACTTGGCCTTGGCCTCTCCTATCCTTGTGTGGAGGCCTCCTGCGACGGTCTCCTCCTCCT
CTCCCTAGGCCGGAGAG---------ACTTCTTCGTCTGCAATCCGGCA--ACTCGTCAGTATGCTCCACTCCAACAAAT
TTATGCCTACGTGCTGCTG------GGGATGTACCCGCACAGCCCAACCGGCGAGTACAGATTATTGCTCTACTGGGACG
AGGATTTGATTTATCCAGATCTGGCA--------------------CCTGGCACACAAGATGGCTCC--T-----GTCTT
CACAATAGGCTCCGGCGAGCCGCCCAGGTACACAGGGTAC------CCTGATTCAGGCATATTGATGTTTAGCAACTCC-
--ATTTTGTTTCATGGTAGCCTGCATTGGCACATAGACAAGGATGCGAGCACAAGCAACATGATAATGTTATTTGACACC
ACCTCTGAGTCCTTCCGGCAGATGCGCGCTCCGGTTGTTCCTAGC---------------------------------CA
CGCTTCCCTGTTTGAGATGGATGGAATGCTCGGCATGTCCAGCTTTAATCATGCA---GCCACAACCATTGATATCTGGA
TGTC---ACAAGACTATGATAGCGAGGCCTGGGCCTTGAAATACCGTGTTGATTTGCCGGTTACAGATCTCACTGCGCAG
TTTGGAAAGTTTACCGAAACTTGGAATTTGGTGGTCACTTGTTGGAACGGTGATGTGCTCATGCTGATCAAATTTGGTGA
GTGGCTACTTCAGGTTGACGTGGATGGCAAGTTGGTTGCCAGTTT---TCACCGCAAATTAGTCCGTTTTACTCAATTCC
AACTCAAACAAACTCTTGTTCCACATACCTTCTTTCCGACACTAGCGGGTTATGCTGTGAACACTTTGCCTTTCAT----
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------------
>chr3D_590
--------------------------------------------------------------------------------
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----------------------------------------------CCACCGCGGCCTCCCGGATGAGATCTTCATCTGG
GAGATCCTCGTCCGCCTGCCCCCCAAATCCCTCCTCCGCTGCCGC------------GCCGTCTGCCGCGGCTGGCGCAG
CGCCACCTACACACGGGGCTTCCTCCTCGCCCACCACGCCCGCCAGCCAACCCTCCCCATCCTCTACTGCTACAAGCTCA
GCGACGACGAGGACGAGGCCGAGTGCCTGGACATCATCCCCTTCGATCACCGGGC------AGGGCTCCCCGCCGCCGAG
CAGATCCAGTCCGCCGCGCGACTTGCTCAAGCCTCCCACCTCTT---TCTGGAGGCCTCCTGTGACGGCCTCCTCGTCGT
CTCCGGAGGCAGCGCGCAATTCG---------CTATCTGCAACCCGGTG--ACTCGTCAGTATGCTCCCCTTCCGCTGCT
TTCTGACAAACCGTTCTTG------GCAATGTACCCTTACCCCCCTACAGGGGAGTATAGACTACTCACGTACCCTTGCC
GGAAGTCAACTCTGACCAGTCAAGTTGA-----------------------------------CTGCTAC-----GTCTT
TGCACTGGGGTCCAGCCAGCCGCCGAGGAACATCGGGTGGGTGGGCGTCGGGGAACTGAACTTCAACG---CCACATCT-
--TTGCTTTTCCGTGGTAGCCTATATTGGTACCTATGGCAGCATGAGAGCGAAAGCAACAAGATAATCGTGTTCGACACC
ACAACTGAGTCGTTCCGGTTATTGTGCGGTGCCGTTGTTCCTGGC---------------------------------TG
CCATGAGCTGTTTGAGATGGATGGCATGCTCGGCATGTCCATCTTTAACATGGAAGG---GACAGTCATTGATATCTGGG
TGTTGCAGCAGGACTATGAAAGAGAGGTCTGGACCTTCAAGTGCCAGATTGAAATGCCGGTTATGGAGATCAGGGCACAG
TGTGGGAGTCATGAAGATTTTTGGAATGTGCTAGTCGTACCTAGGGATGGCGAGTTGTTTGTGCTGCTCAGATTTGCTGG
GTGGCTACTGCAGGTCGACATGAATGGCAAGTTGGTTGCCAGTTT---ACATCGCAAAGGCGTCGGTCCTACTAGGCTTC
AGCTCAAACAAACTCTTGTTCCGCATGCCTTCTTTCCAACACTAGAGGGTTATGTTGTGAACGATT--------------
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------------
>SNPs
------S-----S------------------------------------------SS-----------------------
---S--S---------S-S------------------------------------------S------S-----S-----
-------SS----------------S------S-------------------S---------------------S-----
----------S---------------------S-----S----------------S----SS------------------
----S-------------------S---------S-----------------S---------S--------S----S---
----------------------------------SSSS-SS-S-S-S-S-------------------------S-----
---S------------------------------------------S---------------------------------
-S--S-------------------------------------------------S-------------------------
--------------------------------------------------S-----S-----------------------
--------------------S-----------------------------------------------------------
----------S-------------------------------------------------------S-------------
-------------------S----------------------------S-------------------------------
--------------------------------------------------------------------------------
------------------------------------------------S-------------------------------
--------------------S-----------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------S---------------------------------------------
--------------------------------------------------------------------------------
--------------------------S------------------S----------------------------------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
----S-----------------------------S---------------------------------------------
-----SS------------------S--------------------------------------S---------------
------------------------------------------S-------------------------------------
--------------------------------------------------------------------------------
---------S-------------------------------------------S------------------------S-
----------------------------------------------S---------------------------------
----------------------------S------------------------S-----------------S--------
--------------------------------------------------------------------------------
-------------------SS-----------------------------------------------------------
----------S------S--------------------------------------------------------------
---S--SSSS---------------------------------S----------S-------------------------
--------------------------------------------------------------------------------
-------------------------------------------S----------------------------------S-
------------
>forward_441
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---------------------ATCCCTGGTGGTTCCCGTAT---------------------------------------
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------------
>reverse_2571
--------------------------------------------------------------------------------
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----------TAAGCACCGCTCGTTGAAGT--------------------------------------------------
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------------
