>input_sequence_71649
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-------------------ATGTACCCACACACCCCCACCGGCGACTACCGACTGTTGATGTTCCGGGACTCGGTATCGA
TGCATCATCAACTGGTACCTGACGCCGCTCAAGACGGCTCCTACATCTTCACGTTAGGCTCCGGCCAGCCACCGAGGCAC
ATAGGGTTCCTCGAAGCGGAGGTGCTGACATTCACCTTTGGGTCTCTCCTGTTTCGTGGTAGCCTGCATTGGCGCCCAC-
-----CAGGCAACATGATAATGGTGTTCGACACCACGACTGAGTTGTTCTGGCAGATGCGCGCTCCGGCTGTTCCTCCTG
G---CCATGCT------AAGTTGTTTCAGATGGATGAAATGCTTGGCATGTCTGGCTTTAATGATGCAGCGACAACCATT
GATATCTGGGTGGCGCAGGACTACGAGAGCGAGG--TCTGGGCCTGCAAATACCGGGTAGACTTCTCAGTTGCAGAGATC
ACTCTGCGGTTTGGAAAGTTTGACGAAAGTTCTTGGGTGGTGGTCATGCCTTCG---GATGGTGATGTGTTCCTACTGGT
CAATTTTGGTGAGTG------GCTACTTCAGCTTGACATTGGTGGCAAGTTGGTCGCTACTTTCCA---TCGCAGAGGCC
TCGGTCCTGCAAATCTTCGTCTCAAGCAAACTCTTGTTCAACATACCTTCTTTCCAATACTAGAGGGTTATGTTACCAAC
TCTCCGCCTTTCATCTGA--------------------------------------------------------------
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-------------------------------------------------------
>chr3A_1_TraesCS3A01G485800
AACAGTACAACATTGAATCAGCGCATACACTTAACATCTCTCCGACAAGCATAGATTTCAGAAGACTGAATCAATGTATA
AACTCAAGACGCACTTGTTCTTCAATTTTTACAGTGGACAAAAAAAATGCAGTACACGAATTCGAATGAATAACATTCAC
CTTGCTCTTGCTCTGGATTTCAATTGA-------------TGCCCTTCAATGAAGGGATGCCCGAGGACGACTGAACGA-
---GCCGACCGT----GTCTAGTGGCGGCGGCGC-------CGCTCCGCCCGGCCGTGCCGTTCGCGGTAGGGTTCAGAG
CTGAGG-GCTGGCGCTTCGCTGGGCGTACTACTGGGCCGAG------------------------------TGTCTGGGC
CTGTGGAAGGCTTCAGCCCAGGCCCAGGTTT-GGCCCAGGCCGTTTAGGCCCAGTTCAA--------------------T
CTTTTTTTTTTGCGGGTGAGGCCCAGTTCAATCCACGAGACGAGAGGCAAAACCTA-----------------CCTCAAC
GCCGCCGCCGTCACTCCCTGCCACAAGCAGTCCACCACTCAGTTCACTCCTCTTGCTTGCCGCCGGCGACCATGGTGGAT
GCCGCAAGAGTG---ACAGCGCCGCCTCCCGACGG------CAGCCTCCCGGACGAGATCACCATCTGGGAGATCCTCGT
CCGGCTGCCCCCCAAATCGCTCCTCCGCTGCCGCGCCGTCTGCCGCGCCTGGCGCAGCGCCACCTCCACCCGCCGCTTCC
TCCTAGCCCACAA----CGCCCTCCAGCCCACCCTCCCCCTCCTCTACGGCTACAACTTCGTCGGCGACGAGGTCGAGTC
CCTCGACATCATCCCCTTCCACCAGCG--------------------AGCTCCAGCTCC------GGCCCGTCGCGCGGC
TTGCGCAAGACTCCGACTTCCACCATCTGGAG---GCCTGCTGCGACGGCCTCCTCGTCCTCTCCTTCCGCAACACCAGC
GTCCGTGACTGGCGCTTCGCCGTCTGCAACCCCGCGACTCGTCAGTACGCTCCCCTCCCGTTGGCTTATGGCTCCGGCGT
CGAGTACTCGCTCTTGGGGATGTACCCACACACCCCCACCGGCGACTACCGACTGTTGATGTTCCGGGACTCGGTATCGA
TGCATCATCAACTGGTACCTGACGCCGCTCAAGACGGCTCCTACATCTTCACGTTAGGCTCCGGCCAGCCACCGAGGCAC
ATAGGGTTCCTCGAAGCGGAGGTGCTGACATTCACCTTTGGGTCTCTCCTGTTTCGTGGTAGCCTGCATTGGCGCCCAC-
-----CAGGCAACATGATAATGGTGTTCGACACCACGACTGAGTTGTTCTGGCAGATGCGCGCTCCGGCTGTTCCTCCTG
G---CCATGCT------AAGTTGTTTCAGATGGATGAAATGCTTGGCATGTCTGGCTTTAATGATGCAGCGACAACCATT
GATATCTGGGTGGCGCAGGACTACGAGAGCGAGG--TCTGGGCCTGCAAATACCGGGTAGACTTCTCAGTTGCAGAGATC
ACTCTGCGGTTTGGAAAGTTTGACGAAAGTTCTTGGGTGGTGGTCATGCCTTCG---GATGGTGATGTGTTCCTACTGGT
CAATTTTGGTGAGTG------GCTACTTCAGCTTGACATTGGTGGCAAGTTGGTCGCTACTTTCCA---TCGCAGAGGCC
TCGGTCCTGCAAATCTTCGTCTCAAGCAAACTCTTGTTCAACATACCTTCTTTCCAATACTAGAGGGTTATGTTACCAAC
TCTCCGCCTTTCATCTGACAGATGTTATGTCAAGTGCTGATTC--------TATCTAGCCCAACTGTCAGTATCCTCATG
AGTTGCAG---TGTGTGTGAATTCGGCC-----CACTATGAGCCAGCTAGTTTCATGTT---------------------
------------------------TATGTTTATGTTTCTCTGAATATTCTTCTGGGCTGAAGTGGCTGCCGTGAGTCTTA
ATGCTAAAATTGCAAGTCTCTGTTTACTTTATATTTCTATTTTTATATTTCTCTGATCATTTAACTGAAGAATTAACTTC
T---------------------------------------------------------------------CATTGTATTT
CTGTTTTTATGTTTTGTTTTAGCTGACAATGAAATGAGGCAAATTATCCTGTTTC-AAT--TAGCCAATTTTTCAGTGAA
ATGTTCTATTGCGGTTCATTT-TTATTCATGATTCAACTGCATTTGGTT-AAGTACTGAGATATACTGTTTTAATTCTGC
CTTCATGTTGTATCATTATTCATTTGGAGTTATATTTATCACTTCACTTTATCTGTAGCCATTTTAAGGAATCAATGATT
CGTGTGATGTTTGATATTAACATAAGCTCGAGAAATAGAACCTTTATTTATAA---GTAGTAGAAAGGTTA---------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------TCATG
GTCAGGCTCAGTTTCTAGATTGTGCTCCACTTTAAATTCTGTAAGTGTCAGCCATGTTCTTTTGTCCTGT-------GAT
TGGCGCAATGCGTATGAATTGGGTCAACTATGAGCCGGCTAGTTTCTTTTTATGTGCTGACTGTTTCATGGTTGCATGCA
ATTTATGCTTGTGTGAAAATTGTGAACATCCTTTTGGGCTGAAGTGGTTAGCATGTTGATTCTAAAAATCATGAAGCTGT
TTTGGCCAGCTTTTGAAATGGCTGCCATTGTTCTGTCTCGTGTCTCTGT-----TTTCCTTTGAACTGAAGAATTGACTT
GGTTTTTAATCGAGATTTTCTTCTTTCACTGTTTCTTAAAGGTCAT--CTAGTGGTTTCATC-TACTAAAAATTTAGCCA
ATATACACTTGTTTCCTGTTTCCATGTTTTGTTGTAGCGAATGATCAGCTGCTAT
>chr3D_136
--------------------------------------------------------------------------------
-------------------------------------------------------ACGAATTCGAATGAATAACATTCAC
CTTGCTCT------GGATTTCAGTTGACGCGGGTGCTGCCTGCCCTTCGATGAGGAGATGCCACCAGACGGTACGGGATT
GCGGCGGACCGT----ATCTAGTGGCGGCGCCGG-CGCCGGCGCTCCGCCCGGCCG---------CGGTAGGGTTCAGAG
CTCAAG-CCTGGCGCTGCGCTGGGCGAAATGGGCTGGCATCCGATGCATCCATCAGTGTGTATGGCCGAGATGTCTGGGC
CAGTTGAAGGCCTCAACGGAGGAGGCAGCCCAGGCCCAGCCCGTTTAAGCCCAGTTCAAAGGCATTTCTTCTGC-TGTTT
C--------------------------------CACGAGAGAGCAGACCAAAACCTACCTCCGCTCCCCGCCCCCTCAAC
GCCGCCGTCA-------CTGTCACAGGCAGTCCACCACTCAGTTCACTCCTCTTGCTGGACGCCGGCGACCATGGCCGAC
GCCGCAAGAG---CAACGGCGCCGCCTCACCACGG------CAGCCTCCCGGACGAGATCACCAT---GGAGATCCTCGT
CCGGCTGCCCCCCAAATCGCTCCTCCGCTACCGCGCCGTCTGCCGCGCATGGCGCAGCGCCACCTCCACCCGCGGCTTCC
TCCTCGCCCACCA----CGCCCTCCAGCCCGCCCTCCCCCTCCTCTACGGCTACAACTTCGTCGGCGACGAGGTCCAGTC
CCTGGACATCATCCCCTTCCACCAGCGGGCAGGCGCCGGCCAGCCCCAGCTCCAGCTCC------AGCCCGTCGCGCGGC
TTGAGCAAGACTCCGACTTCCACCACCTGGAG---GCCTGCTGCGACGGCCTCCTCGTCCTCTCCTTCCGCAACACCAGC
GTCCGCGACTGGCGCTTCGCCGTCTGCAACCCCGCTACTCGTCAGTATGCTCCCCTCCCCTTGGCTTATGGCTCCGGCGT
CGAGTACTCGCTCTTGGGGATGTACCCACACATCCCCACCGGCGACTACCGGCTGTTGATGTACCGGGCCTCAGCATTGA
TGCATGGTGAACTGGTGCCTGCCGCTGCTCAAGACGGCTCCTACATCTTCACATTGGGCTCCGGCCAGCCACCGAGGCAC
ATAGGTTTCCTTGACGCGGAGGTACTGACGTACACCTTTGGATCTCTCCTGTTTCGTGGTAGCCTGCATTGGCACCCAC-
-----CAGGCAACATGATAATGGTGTTCGACACCACGACCGAGTTGTTCCGGCAGATGCGCGCTCCGGTTGTTCCTCCTG
G---CCATGCT------AAGTTGTTTCAGATGGATGAAATGCTTGGCATGTCCGGCTTTAATGATGCAGCGACAACCATT
GATATCTGGGTGGCGCAGGACTACGAGAACGGGG--TCTGGGCCTGCAAATACAGGGTAGAGTTCTCAGTTGCAGACCTC
ACTCCGCGGTTTGGAAAGTTTGACGAAAGTTCTTGGGCGGTGGTCGTGCCTTGG---GATGGTGACGTGCTCCTACTGGT
CAATTTTGGTGAGTG------GCTGCTTCAGGTTGACATTGAGGGCAAGTTGGTCGCTACTTTCCA---TCGCAGAGGCC
TCGGTCCTGCAAATCTTGGGCTCAAGCAAACTCTTGTTCATCATACCTTCTTTCCGACACTGGAGGGTTATGTTGCCAAC
TCTTTGCCTTTCATCTGACAGATGTTATGTCAATTGGTGATTC--------TA----GCCCAACTGTCACTATCCTCATG
AGCTGCAG---TGTGTATCAGTTCGGTC-----CACTATGAGCCTGCTAGTTTCATTTTGATGCACAGACAAGTTATGAT
CAAGAAGCTTGACTGTTTCATGGCTATGTTTATATTTCTCTGAATGTTCTTCTGGGCTCAAGTGGCTGCCGTGAGTCTTG
ATGCTAAAATTACAAGTCTCTGTTTAT---------------------------------TTAACTGAAGAATTT-CTTC
TCCTTTTATCAAGGTCCTCTTTTTATAGATAACCATTGCTCTTCTTAATACTAAATAATTAGTAAATGTACATTTGATTT
ATGTTTCTCTGTTTTGTTTTAGCTGACAA-GAAATGAGGCAGATTATCCTTTTTTTAATTATAGTCAATTTTTCAATCAA
ATGTTGTGCTGCAGTTCATTTCTTTTTCATGATTCCATTGCATTTGGTTAG-GTATTGAGACATACTGTTTTAATCCTTC
CTTTACACTGTA-------TCATTTGGAGTTATATTTATCACTTCACTTTATCTGTAACCATTTTAAGGAATCAATGATT
CATGTGATGTTTGATCTTAACATAAGCTCGAGAAATGGAACCTTCATTGATAATAAGTAGTAGAAAGGTTG---------
--------------------------------------------------------------------------------
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---------------------------------------------------------------------------TCATG
GTCAGGCTCAGTTTCTAGAT----------TTTAAATTCTGTAAGTGTCAGCCATGTT----------------------
--GCGCAATGCGTATGAATTGGATCCACTATGAGCCGGCTGGTTTCTTTTTATGTACTGACTGTTTCATGGTTGTCTGAA
ATTTATACTTGTGTGAAAACTGTGAATATCCTTTTGGGCTGAAGTGGTTAGCATGTTGATTCTAAAAATTATGAAATTAT
TTTGGCCAGCTTTTAAAATAGTTGCCATTGATATGTGTCGTGTTTCTAT-----TTTCCTTTGAACTGAAGAATTGACTT
GGTTTTTAATTGAGATTTTCTTCTTTCAGTTATTCTCAAAAGGTCATAC-AGTGGTTTCATGATATTAAATATTTAGCCA
ATGTACACTGGTTTCCCGTTTCCATGTTTTGTTGTAGCTGACGATCA--------
>chr3B_139
--------------------------------------------------------------------------------
----------------------------------------------------------AATTCAAATGAATAACATTCAC
CTTGCTCTTGCTCTGGATTTCAATTGA-------------TGCCCTTCAATGAGGGGATGCCCGAGGACGACTGAACGAG
CTCCGAGAGGCCGACCGTGTAGTGGCGGCGCCGGCCGCCGGCGCTCCGCCCGGCCGCGCCGTTCGGGGTAGGGTTCAGAG
CTGAAGGGCTGGCGCTGCGC-------------------AG------------------------------TGTCTGGGC
CAGTTGAAGGCCTCAAAGGAGGAGGCAACCC---------------AGGCCCAGTTCAAAGGCATTTCTTCTGCCTGTTT
C--------------------------------CATGAGAGAGCAGAGCAAAACCTACCTCCGCTCCCCT-CCCCTCAAC
GCCGCCGTCA-------CT-----------------------------CCTCTTGCTTGTCGCCGGCGACCATGGCAGAT
GCCGCAAGAGGAGCAACAGGGCCGCCTCCCCACGGCAGCCTCAGCCTCCCGGACGAGATCACCATCTGGGAGATCCTCGT
CCACCTGCCTCCCAAATCGCTTCTCCGCTGCCGTGCCGTCTGCCGCGCCTGGTGCGGCGCCACCTCCACCCGCCGCTTCT
TCCTCGCCCACCA----CGCCCTCCAGCCCACCCTCCCCCTCCTCTACGACTACAACTTCGTCGGCGACGAGGTCGAGTC
CCTGGACATCATCCCCTTCGACCACGCC---------------------------CTCC------AGCCCGTCGCGCGGC
TTCAACAAGCCTCCGACTTTCACCATCTGGAG---GCCTGCTGTGACGGCCTCCTCGTCCTCTCCTTCCGCAACA-----
-------ACTGGCGCTTCGCCATCTGCAACCCTGCTACTCGTCAGTACGCTCCCCTCCCGCTGGCCTATGGCCGTAATGG
CGAGTACTCGCTCCTGGGGATCTACCCGCACAGCCCCACCGGCGACTACCGGCTACTGATGTACCGGTACTCACCATTGA
TGCATGATGAACTGGT----------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------------------------------------------TGCAGAGCTC
ACTGTGCGGTTCGGAAGGTTTGACGAAAGTTCTTGGGTAGTGGCCGTGCCTTGG---GATGGTGACGTGCTCCTACTGGT
CAATTTTGGTGACTG------GCTACTTCAGGTTGACATTGAGGGCAAGCTGGTCGCTACTTTCCA---TCGCAGAGGCC
TCGGTCCTGCAAATCTTCGGCTCAAGCAAACTCTTGTTCAACATACCTTCTTTCCGACACTGGAGGGCTATGTTGCAAAC
TCTCCGCCTTTCATCTGACAGATGTCATGTCAGGTGCTGATTCTATC----TA----GCCCAACTGTCAGTATCCTCATG
AGTTGCCG---TGTGTATGAATTCAGCC-----CACTATGAACCAGCTAGTTTCATTT-GATGCATAGACAAGTTATGAT
CAAGAAGCTTGACTGTTTCATGGTTATGTTTATATTTCTCTGAATATTCTTCTGTGCTGAAGTGGCTGCCATGAGTCTTG
ATGCTAAAACTGCAAGTCTCTGTTTAC---------------------------------TTAACTGAAGAATTAACTTC
TCCCTTTATCAAGGTCTTCTTTTTATAGATTACTAGTGCTCTTCTTAATAC--------TAGCAAATGTACATTTTATTT
CTGTTTCTATGTTTTGTTTTAGCTGACAATGAAATGAGGCAAATTATCTTGTTTT-AATTATAGTCAATTTTTCAGTGAA
ATGTTCTGTTGCAGTTCA-TTTTTATTCATGATTCCATTGCATCTGGTTAAAGTATTGAGATATACTGTTTCAATTCTGC
CTTCATGTTGTATCATTATTCATTTGGAGTTATATTTATCACTTCACTCTGTCTGTAACCATTTTAAGGAATCAATGATT
CATGTGATGTTTGATATTAACATAAGCTCGAGAAATGGAACCTTTATTTGTAA---GTAGTAGAAAGGTTATCATCAGTG
GCGGAGCTATGTTGTAAGCTACAGGGGCCATGCCCCCCCAGCTTTTGTAAAATATGTGAAGGAANNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCATG
GTCAGGCTCAGTTTCTAGAT----------TGTGCTC-----------CAGCCATGTTCTTTTGTCCTGTCTCCTGTGAT
CGGTGCAATGCGTATGAGTTGGGTTCACTATGAGCCGGCTAGTTTCTTTTTATGTACTGACTGTTTCATGGTTGCATAAA
ATTTATACTTGTGTGAAAACTGTGAATATCCTTTTTGGCTGAAGT-GTTAGCATGTTGATTCTAAAAATCATGAATCTGT
TTGGACCAGCTTTTGAAATGGTTGCCATTGATCTGTCTTGTGTCTCTGTTTTCCTTTCCTTTGAACTGAAGAATTGACTT
GGT-----------------------------------------------------------------------------
-------------------------------------------------------
>chr3B_326
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
----------------------------------GGCCGAG------------------------------TGTCTGGGC
CTGTTGAAGGCTTCAGCCCAGGCCCAGGTTT-GGCCCAGACCGTTTAGGCCCAGTTCAA--------------------T
C--------------------------------CACGAGACGAGAGGGCAAAACCTACCTCCCCTCCCCTTCCCCCCTAA
A-CGCCGCCGTCACGCACTGCCACAAGCAGTCCACCACTCACCT-----CTCTTGCTTGCCGCCGGCGACCATGGCGGAC
GCCGCGAGAGGAGCAACGGCGCCGCCTCCCGGCGG------CAGCCTCCCAGACGAGATCACCATCTGGGAGATCCTCGT
CCGTCTGCCCCCCAAATCGCTCCTCCGCTGCCGCGCCGTCTGCCGCGCATGGCGCAGCGCCACCTCCACCCGCCAATTCC
TCCTCGCCCACCA----CGCCCTCCAGCCCGCCCTCCCCCTCCTCTACGGCTACAACTTCGTCGGCGACGAGGTCGAGTC
CCTCGACATCATCCCCTTCCACCAGCGGGCAGGCGCCGACC------AGCCCCAGCTCCAGCTCCACCCCGTCGCGCGGC
TTGAGCAAGACTCCGACTTCCACCATCTGGAG---GCCTGCTGCGACGGCCTCCTGGTCCTCTCCTTCCGCCACACCAGC
GTCCGTGACTGGCGCTTCGCCGTCTGCAACCCCTCTACTCGTCAGTACGCGCCCCTCCCGTTGCCTTATGGCTGTAACAT
CGAGTACTCGCTCCTCGGGATGTACCGGCACATCCCCACCGGCGACTACCGACTGTTGATGTACCGGGACTCAGTATTGA
TGCCTCATGAACTGGTACCTGACCCCCCTGAAGACGGCTCCTACATCTTCACGTTAGGCTCGGGCCAGCCACCGAGGTAC
ATAGGGTTCCCCGATGCGCAGGTGCTGACATACACCTTTGGATCTCTCCTGTTTCGTGGCTGCCTGCATTGGCACCCAC-
-----CAGGCAGCACGATAACGGTGTTCGACACCACTACTGAGTTGTTCTGGCAGATGCGTGCTCCGGTTGTTACT---G
G---CCATGCT------AAGTTGTTTCAGATGGATGGAATGCTTGGCATGCCCGGCTTTAATGATGCTGCGACAGCCATT
GATATCTGGGTGGCGCAGGACTATGAGAGGGAGG--TCTGGGCCTGCAAATACCGGGTAGACTTCTCATTTGCAGACCTC
ACTCTGCAGTTTGGCAAGTTGGACGAAAGTTCTTGGGTGGTGGCTGTGCCTTGG---GATGGTGACGTGCTCCTACTGAT
CAATTTTGGTGAGCG------GCTACTTCAGGTTGACATTGAGGGCAAGTTGGTCGCTACTTCCCA---TCGCAGAGGCC
TCGGTCCTGCAAATCTTTGGCTCAAGCAAACTCTTGTTCAACATACCTTCTTTCCAACACTCGAGGGTTATGTTGCCAAC
TCTGCACCTTTCATCTGACGGATGTTATATCAAGTGGTGAT----TC----TA----GCCCAACTTTCAGTATCCTCATG
AGCTGCAG---TGTGTATGAATTCGGTC-----CACTATGAGCCAGCTAGTTTCATTTTGATG-----------------
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-------------------------------------------------------
>chr3D_565
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------------------------CCTCCCCACCG------CAGCCTCCCGGACGAGATCACCATCTGGGAGATCCTCGT
CCGGCTGCCCCCCAAATCGCTCCTCCGCTGCCGCGCCGTCTGCCGCGCGTGGCGCAGCGCCACCTCCGCCCGCCGCTTCC
TCCTCGCCCACCA----CGCCCTCCAGCCCACCCTCCCCCTCCTCTACGGCTTCAACTTCGTCGGCGACGAGGTCCAGTC
CCTCGACATCATCCCCTTCCACCAGCGGGCAGGCGCCGGCC------AGCTCCAGCTCC------GGCCCGTCGCGCGGC
TTGAGCAAGACTCCGACTTCCACCATCTGGAG---GCCTGCTGCGACGGCCTCCTCGTCTTCTCCTTCCGCAACACCAGC
GTCCGCGACTGGCGCTTCGCCGTCTGCAACCCCGCTACTCGCCAGTACGCTCCCCTCCCCCTGGCTTATGGCTCCGGCGT
CGAGTACTCGCTCCTGGGGATGTACCCGCACATCCCCACCGGCGACTACCGGCTGTTGATGTACCGGGCCTCAGCATTGA
TGCATGGTGAACTGGTACCTGCCGCCGCTCAAGACGGCTCCTACATCTTCACTTTAGGCTCCGGCCAGCCGCCGAGGCAC
ATAGGGTTCCTCGATGCGGAGGTGCTGACATATACCTTTGGATCTCTCCTGTTTCGTGGTAGCCTGCATTGGCGCCCAC-
-----CAGGCAACATGATAATGGTGTTCGACACCACGACTGAGTTGTTCCGGCAGATGCGCGCTCCGGTTGTTC---TTG
G---CCATGCT------AAGTTGTTTCAGATGGATGAAATGCTTGGCATGTCCGGCTTTAATGATGGGGGGACAACCATT
GATATCTGGATGGCGCAGGACTACGAGAGAGGGG--TCTGGGCCTGCAAATACCGGGTAGAGTTCTCGGTTGCAGACCTC
ACTCTGCGGTTTGGAAAGTTTGACGGAAGTTCTTGGGTGGTAGCCGTGCCTTGG---GATGGTGACGTGCTCCTACTGGT
CAATTTTGGTGAGTG------GCTACTTCATGTTGACATTGGTGGCAAGTTGGTTGCTACTTTCCA---TCGCAAAGGCC
TCGGTCCTGCAAATCTTCAGCTCAAGCAAACTCTTGTTCAACATACCTTCTTTCCGACACTTGAGGGTTATGTTGCCAAC
TCTGCGCCTTTCATCTGACGGATGTTATATCAAGTGGTGAT----TC----TATCTAGCCCAACTGTCAGTATCCTCATG
AGCTGCAG---TGTGTATCAGTTCGGTC-----CACTATGAGCCTGCTAGTTTCATTTTCATGCATAGACAAGTTATGAT
CAAGAAGCTTGACTATTTCATAGTTATGTTTATATTTCTCTGAATATTCTTCTGGGCTGAAGTGGCTGCCGTAAGTCTTG
ATGCTAAAGTTGCAAGTCTCTGTTTAC---------------------------------TTAAGTGAAGAATTAACTTC
TCCTTTTATCAAGGTCCTCTTTTTATAGATTACCAGTGCTCTTCTTAATACTAAATAATTAGCAAATGTATATTTGATTT
ATGTTTGTCTGTTTTGTTTTAGCTGACAA-GAAATGAGGCAGATTATCCTGTTTT-AATTATAGTCATTTTTTCAATGAA
ATGTTGTGCTGCAGTTCATTTCTTTTTCATGATTCCATTGCATTTGGTTAG-GTATTGAGACATACTGTTTTAATTCTTC
CTTTACGTTGTA-------TCATTTGGAGTTATATTTATCACTTCACTTTATCTGTGACCATTTTAAGGAACCAATGATT
CATGTGATGTTTGATCTTAACATAAGCTTGAGAAATGGAACCTTTATATTG-ATAAGTAGTAGAAAGGTTC---------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------------------TCGTG
GTCAGA------TTCTAGATTGTGCTCCACTTTAAATTCTGTAAGTGTCAGCCATGTTCTTTTGTCCTGT-------GAT
TGGCGCAATGCGTATGAATTGGGTCCACTATGAGCCGGCTAGTTTCCTTTTATGTACTGACCGTGTAATAGTTGCATGAA
ATTTATACTTGTGA-AAAACTGTGAATATCCATTTGGGCTGAAG--------------------------------CTGT
TTTGGCCAGCTTTTGAAATGGTTACCATTGATCTGTCTTGTGGCTCGGT-----TTTCCTTTGAACTGAAGAATTGACTT
GGTTTTTAATCGAGATTTTCTTCTTTCAGTCTTTCTTAAAGGTCAT--C-AGTGGTTTCATTATACTAAATATTTAGCCA
ATATACACTGGTTTCCTGTTTCCATGTTTTGTTCTAGCTGATGATCA--------
>chr3A_581
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------TCCCGGACGAGATCGCCATCTGGGAGATCCTCGT
CCGCCTGCCCCCCAAATCTCTCATCCGCTGCCGCGCCGTCTGCCCCGCCTGGCGCCGCGCCACCTCCACCCGCGACTTCC
TCCTCGACCACCACGCCCGCCCGCCAGCCCGCCCTCCCCCTTCTCTGCAGCTTAGAAGACGACGACGAGGACGACGCGTC
TCTATACATCACCCCCTTCGACC-------------------------------------------GCCGGAGGCACGAC
TTGACGCCGCCTCCAACTTCTGTCCAAGACTAAGTGCCTCCTGTGATGGCCTCCTCGTCCTCTCCTTCCGCAACATGATC
TCATATGGCTGCCAATTCTCCATCTGCAACCCTGCCACTCGTCAGTATGCTCCCCTCCCGCTGGATTATGGCCCTACTGT
CGAGTACACAATCTTGGGGATCTACCCGCACATCCCTACCGGCGAGTACCGACTATTGCTTCACAGGGTCCAAATGTTGA
GGTCC---------------------------GATGGCTGTTATGTCTTCTCGTTAGGCTCCGGCCAGCAGCTGAGGTAC
ATAGGCAGGCCCGATGCGGGGAAACTGATAGGCTCCCCCATATCTGCCTTGTTCCGTGGTAGCCTGCATTGGCACTCACC
ATCAACAGGCAGCATGATAATGGTATTCGACACCACATCTGAGTTGTTCCGGCAGATGCGCTCTCCGGTTGCC---CCTG
G---CCATGCT------GACATGTTTGATCTTGGTGACATGCTTGGGCTCTGCAGTCATGACAGTGAATGGACAAGTGTT
AGTATCTGGGCACTACAGGATTATGAAGGCGAGGTCTCTGGACCTTAAAATACCGTGTTAAATTACCGGTTGCAGAAATC
GGGGTCCAT---GATAAGCTCGACAGCGATTGGGATGTGGTGGTCGGTTCTTGG---GATGGTGATGTCGTCCTGCTGGT
TACCATTGATGGCAGCAACATGCTATTTCAGGTTGACATCAATGGCAAGTTGGTTGCGACTATCGCCTGTTGCAGAGACC
TCTACTCAGCTCATCTTTGGCTCAAACAAACTCTAGCTTTGCATACGTTCTTTCCGACACTTGAGGGTTATGCCGTGAAT
GCTTCGCCATTTATCTGATAGCTTTTATGTGAGGTGGTGAT----TCAGGATG----GCCTTACTGTCAGTATCCCCATC
AGTTGCTGCAATGTGTATGATTGAATTGAGTCACACTAGGGGCCAACTAGTTTCATTTTGATGT----------------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>chr3B_586
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------GACGAGATCGCCATCTGGGAGATCCTCGT
CCGCCTGCCCCCCAAATCTCTCATCCGCTGTCGTGCCGTCTGCCCCGCGTGGCGCCGTGCCACCTCCACCCGCGACTTCC
TCCTCGCGCACCA----TGCCCGCCAGCCCACCCTCCCCATCCTCTGCAGCTTAGAAGACAACGACGACGATGACACGTC
TCTGTACATCACCCCCTTCGACCACCGGACATCCGG---------------CAAGCTCC------AGCCCTTGGCGCGAC
TTGACGCCGCCTCGGACATCTGTCTAAGACTAAGTGCCTCCTGTGATGGCCTCCTCGTCCTCTCCTTCCGCAACATGAGC
TCCTTTGGCTGCCAATTCTCCATTTGCAACCCTGCCACTCGTCAGTATGCTCCCCTCCCGCTGGATTATGGCCCTACCGT
CGAGTACACAATCTTTGGGATCTACCCGCATATCCCTACCGGCGAGTACCGGCTATTGCTTCACAGGCTCCACATGTTGA
GGTGT---------------------------GATGGCTGCTACGTCTTCTCGTTAGGCTCCGGCCAGCAGCTGAGGTAC
GTAGGCAGGCCCGATCTGTGGAAACTCACAGGCTCCCCCAGATCTGTCTTGTTCCGTGGTAGCCTGCATTGGCACTCAT-
-----CAGGCATCATGGTGATGGTATTCGACACCACATCTGAGTCGTTCTTGCGGATGCGTTCTCCAGTTTTCC---CTG
G---CTATGCT------GACCTATATGATATTGGTGACATGCTTGGGCTATGCAGTCATGACAATGAGTGGACAAGTGTT
AGTATCTGGGCACTGCAGGATTATGAAGGCGAGG--TCTGGACCTTAAAATACCGTGTTAAATTACCGGTTGCAGAAATC
TGGGTCCAT---GATAAGCTCGACAGCGATTGGGATGTGGTGGTCGGTTCTTGG---GATGGTGATGTGGTCCTGCTGGT
TACCGTTGATGGCGGCAACATGCTATTTCAGGTTGACATCAATGGCAAGTTGGTTGCGACTATCTGCTGTTGCAGAGACC
TCTACTCAGCTCATCTTTGGCTCAAACAAACTCTAGTTTTGCATACCTTCTTTCCGACACTTGAGGGGTATG--------
--------------------------------------------------------------------------------
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-------------------------------------------------------
>chr3D_1088
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------GCTCAAAGTGGCTCCTACATCTTCACGTTAGGCTCCGACCAGCCGCCGAGACAC
ATAGGGTGCCGTGATGCCAAGGAATTGCTGCATTCCCCCAGATCTGTCCATTTTCATGGTAGCCTGCATTGGCAT-----
----ACAGAGCGGCTAATAATGGTATTTGACACCACCTCAGAGTCGTTCCGGCAGATGCGCTCCCCAATTGTTCCT---G
A---CCATGTCATTGGCGACCTGTTTGAGATGAGTGACATGCTTGGCATGTTCAGTCTTAATGCTGAAGAGACAATTGTT
GATATCTGGGTGATGCTGGACTATGAGAGCCAAG--TCTGGGCCTCCAAAGGCCGGGTTGAGTTGCCGATTTCAGGGATT
AGGTTGCAATTAGAAAAGTTTGACACTTGGTTGGATCTGGTGGCCGCATCTTGGAACGGTGATGACGTGCTCATGATGGT
CAAATTTGAAGACGACTCC---CTACTTCAGATTGACATTGATGGCAAGTTGGTTGCTAGTCTCCA---TCGCCGACTCC
TCTATCCTACTCGACTTCGGCTCAAACAGTCTCTAGTTTCACATACCTTCTTTCCGACTCTAGAGGGTTATGTTGTCAAT
GCTTTGCCTTTCATCTGACCAG----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ATGATTATGT---------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>chr7A_1190
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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------------------------------------------------CTGTTCCGTGGTAGCCTGCATTGGCAC-----
----ACTGGCAACCGGATAATGGTATTCGACACCGCCACTGAGTCGTTCCGGCAGATCCGTGCCCCGGTTGCC---CATG
AGGACTATGGA------CGACTGTTTGAGATGGATGACATGCTTGGCATCTTCTTTCTTAATGATGAAAAGACGACCGTT
GATATTTGGGTGATGCAGGACTACCAAGGCGAGGTCT--GGGCTTTCAAGTGTCGGGTTGAATTGCCGGTTGCCGAGATC
AGGGACCGGTGTCAAAATTCTAGCCATATTGAGGAAGTGATGGTTGTTAATGGT---GATGGTGAGTTGCTCGTGTTGGT
CGGTTTTGAGGACTG------GCTGTTTCAGGTTGATATTGATGGCAAGTTGATTGCCAGTTTCCA---TGCCAGAGGCC
TCCCTTCCTATAATATTGTGCACAAGCAAACTCTTGTTCAACATACCTTCTTTCCGACACTCGAGGGTTATGTTATGAAT
GATTCGCCTTTCATTTGACCAG----------------------------------------------------------
--------------------------------------------------------------------------------
-------------------ATGATTATGT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------
-----------------------------------------------------S--------------------------
-----S------------------------S--S----------------------S-----------------------
----S-----------S---------S-S-SSSS----------------------------------------------
----S----------------------------------S----------------------------------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------S---S-SS------------------------
--------------S-S----------------------------------------------------------S----
----------SS--------------------------------------------------------------------
--------------------------------------------------------------------------------
----S------S--------------------------------------------------------------------
--------------------------------------------------------------------------------
---S----------------------------------------------------------------------------
-----------------------------------S--------------------------------------------
--------------------------------S-----------------------------S---------S----S--
--------S-----------------------------------------------------------------------
--------------S----------------S---------S--------------------------------------
--------------------------------------------------------------------S-----------
----------------------------------------------------S---------------------------
--------------------------------------------------------------------------------
---------------------------------------------S------S----------------S----------
-------------------------------S------------------------------------------------
-------------------S-------------------------------------S----------------------
--------------------------------------------------------------------------------
----------------S---------------------------------------S-----------------------
---------------------------------S---------------------------------------------S
---------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS--------------------
--------------------------------------------------------------------------S-----
------S-----------------------------------------------S---------S---------------
-------S----S----------------------S-S-----------------S------------------------
---------------------------------------------------------S----------------------
-S----------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------S-----------------------------S----------------------S-
------S------------S------S------------------------------------------------S----
---------------------S--------S-------------------------------------------------
----------------------------S-S------------------S-----------S--------S---------
---------S----------------------------SS-------SSSSSSSS
>forward_325
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------------CGGTAGGGTTCAGAG
CTGAG---------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_1295
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------AGCGGAGGTGCTGACATTC-----------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>forward_1193
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TGTTGATGTTCCGGGACTCG-------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
>reverse_3016
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------GCTGACTGTTTCATGGTTGCA----
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------
