>input_sequence_71645
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-------------------------------------------------------------------------------A
TGAGCGGCGGTGGCGCCGGCGACACGCTGGACAAGCTGGTGGTGTTCCTGGCGAAGCGCGACGGCATCGACAAGCTGGTG
AAGACGTACCAGTACGTGTCGAAGCTGGCGCACTGGGCGGCGGAGACGTCGCACCCGGGGCTGGCCGGGCGGGCCAAGAG
CTGGGAGACGGCGGCCGGGCTGAGCCGCAAGGTGTTCCGGTCGGGGCGGTCCCTCACGGGCTTCAACGCGCTGCGGCGGT
CCCCGGGGGAGTTCGGCGCGCTGGCCGTGCTGGCCAACGCCGGCGAGATGGTCTACTTCTTCTTCGACCACTTCACGTGG
CTGTCCCGCGTGGGCGTGCTGGAGCCCTGGCTGGCGCGCCGCGCCAGCTTCGTGTCGGCGTTCGGCGAGTGCGTCGGCTA
CGTCTTCTTCATCGTCATGGACTTCATCATGATCAGGCGCGGGATCAGGCGGGAGAGGGCGCTGCTGCG---------CG
GCGGCGAGGGGAAGGAGGAGGAGGAGAGGGAGGGCGAGGTGCGGAGGATCCGGGCGGACCGGGTGATGCGGCTCATGGGG
ACGGCGGCCAACCTGGCGGACCTGGTCATCGCCGTCGCGGACATCGAGCCCAACCCGTTCTGCAACCACGCCGTCACGCT
GGGGATCAGCGGGCTCGTCTCCGCCTGGGCCGGATGGTACAGGAACTGGCCGTCGTGA----------------------
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>chr2D_1_TraesCS2D01G365100
CGAGATCTCCTTCTACCTCCTGAAAAGCATCGTTCATCGTCTTTCCCATGATCTCAAGTTGAACTGCCCACGATCGCCGG
CCGAACCGCCTGCTTCTGTCGCCCACGGTCGGCGACGCTCTTGAGACCGCCTGGCCGCCCCGCCCTCCCCCTACCGTCAT
GCTTTCCGTCGCCCTCGACCATCTCTCTAAACCGGCCAATCATCTGAATTTTCCGACGAACCTGCACCCCCACCCCGAAC
CATCAATCTTCGGACTCGCCCCCACCGGCTATGGCTCGTTTCTGGTAGAGGCCTTGACGGTGTCCCCGGGCCTCGCTACC
GCACGTCGTGGTGCCGCCAACGCCCGCTTCCTTCTCCACCGAATTGAACGGCCCAAATTCGAAATCCAGGTCACTAATGT
CCAGCAAATCTGATACTAATATTTCAATATTTCAGTTTTGCTAAAGCACATCTAGATGTGCCATAAGTATTGCACATCTA
AGTCATATATCATTGATCTTACATTGAGATTCGTGTGAATATTTTCTTTCTCTTTTTCTCTTTATGCTTGATTCACTCAC
TTAGATGTGCAATAATTAAAACATATCTAGATGTGGCCTAGACACAACCATATTTTCGATACCAATGCTACTGTCGGAAG
GCAAAATGCACTACGCTGGTGGTCGACGGAATAAAGATAAAGCAGAACCTAGCCACAAAAAAGCATAAAGAGAAAGTAAA
GTAATGAACCGATCAAGCAAGCAAACAAAAGTGTTTGTCTTTCCTCGG-CCCTCTCAATCCATCCTCGATCGCCACCTCC
AGAAAATCACTCACCCATGGCGCAGACGACAAACGCATCCCAGCCAAGTGCCCGCCACGGCCCTTTATCCCCACCCAGCC
ACACACATCTACCCATCGCGTCCATTTCCCACAACCCAACTCTGCAAATCGA--------------CCTCCCACGCACGC
GCGCGCGCGCCTCCCCTGACCC-----------------------GCCGCAGCAGCGGCGCCAGAG-CGATCGGCCGCCA
TGAGCGGCGGTGGCGCCGGCGACACGCTGGACAAGCTGGTGGTGTTCCTGGCGAAGCGCGACGGCATCGACAAGCTGGTG
AAGACGTACCAGTACGTGTCGAAGCTGGCGCACTGGGCGGCGGAGACGTCGCACCCGGGGCTGGCCGGGCGGGCCAAGAG
CTGGGAGACGGCGGCCGGGCTGAGCCGCAAGGTGTTCCGGTCGGGGCGGTCCCTCACGGGCTTCAACGCGCTGCGGCGGT
CCCCGGGGGAGTTCGGCGCGCTGGCCGTGCTGGCCAACGCCGGCGAGATGGTCTACTTCTTCTTCGACCACTTCACGTGG
CTGTCCCGCGTGGGCGTGCTGGAGCCCTGGCTGGCGCGCCGCGCCAGCTTCGTGTCGGCGTTCGGCGAGTGCGTCGGCTA
CGTCTTCTTCATCGTCATGGACTTCATCATGATCAGGCGCGGGATCAGGCGGGAGAGGGCGCTGCTGCG---------CG
GCGGCGAGGGGAAGGAGGAGGAGGAGAGGGAGGGCGAGGTGCGGAGGATCCGGGCGGACCGGGTGATGCGGCTCATGGGG
ACGGCGGCCAACCTGGCGGACCTGGTCATCGCCGTCGCGGACATCGAGCCCAACCCGTTCTGCAACCACGCCGTCACGCT
GGGGATCAGCGGGCTCGTCTCCGCCTGGGCCGGATGGTACAGGAACTGGCCGTCGTGAGCTGAGCTCGGTCGGATTGGAT
AGGCATTTCGACCGGCAAGATGTACTATGTAAAAAATGTACGCTTACCGCGTTAATTATTTTCTCCTATTATTACGAGAC
TGTTGTATGGCAGAGTTCTGGCAACACACTTCCAACCTCCTTCAGAATAGACTACC--------ATAACAGTCTTAC---
-------ATAGCT-------TGCTGACCCAAAGCAAATGGGAAAGAAGGTGCGAGCTCAA-----GTTAGAGCACCTAAT
CTACGGGTGCAACGCCCGGTCAATAATTACTTCCTTTTGGATTCTTTTCGAGATATGTTATCACATACTGTATCACATAT
GCCATGCGGTCAATAATTACTTCGGCGGATACTGCTTTCGCCAAAACATCAACTAGATAGCGGTGACCAAGCCGAATCAC
CCGAAATGCCTGCCAAGG-CGTCGTCATGTCTAGGCCAGGTCGGGGCTCAGCTGGTGAGCGCCGAGAGCATGCCGCCACC
GCTCTTCGAGGCCATCACGACCTCCCAACCAGGCCCTTTCAGGGGGATAAGAGGGGGGGCATCGGCGGCGGCAGGCGGGC
CGGTGAGGTCGCTCCGGTCCATCACCTTCAAAAGGTCCTCGTCGCTGATGTCGGTCTGGATCATCCTGTCTTCCTCGTCC
TGCTCGTCCCTCAGCAGCGCAAGCAGCTCCTCCTCCTGCATTTTCCAACAAAGCAGAAGAGCAAATCAGCCATCATTCCC
AGTTGCTTCGCTTTTGTTTT------------------------------------------------------------
----------------------------------TACTTCCTTTGGTGTTTCATTTCTGAACAA----------------
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-------------------ACAATT-TACGCAGTAGACAAGAACACAA--TCTATAGCCGAGACTGAA-ATCTTTACATC
TAAGACATTAGGCTTCGCGCTG--------TTTTGTTCAAACTGCCCCTTCCCGATCACAACATGCTCTAGCTTCAGCTT
TCCAAAAGCTCTCTTGATAATCCGTCCCTGCGACAATGAGGAGGTGAGCAGCGATGCCACAAAACATAGCCTAGCAAG--
--AGTCTGCAGGTCATCCATC---CATACCTCAACAG
>chr2A_610
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-------------------------------------------------ATATTTTCGATACCAATGCTACCGTCGGAAG
GCAAAATATGCTACGCTGGTGGCCGACGGAATAAAGATAAAGCAGAACCTAGCCACAAAAATGCATAAAGAAAAAGTAAA
GTAATGAACCGATCAAGCAAGCAAACAAAAATGTTTGTTTCCTCCTCG-CCCTCTCAATCCATCCTCGATCGCCACCTCC
AGAAAATCACTCACCCATGGCGCAGACGACAAACGCATCCCAGCCAAGTGCCCGCCACGGCCCTTTATCCCCACCCAGCC
ACACACATCTACCCATCGCGTCCATTTCCCACAC--------------TCCA--------------CCTTCCATGCACAC
GCGCGCGCGCCTCCCCTGACCCCGCAGAGCTCCCCAACCCAACCCAACCCAACCCAACCAGACCGATCGACCGGCCGCCA
TGAGCGGCGGCGGCGCCGGCGACACGCTGGACAAGCTGGTGGTGTTCCTGGCGAAGCGCGACGGCGTGGACAAGCTGGTG
AAGACGTACCAGTACGTGTCCAAGCTGGCGCACTGGGCGGCGGAGACGTCGCACCCGGGGCTGGCCGGGCGCGCCAAGAG
CTGGGAGACGGCGGCCGGGCTGAGCCGCAAGGTGTTCCGGTCAGGCCGCTCCCTGACGGGCTTCAACGCGCTGCGGCGGT
CCCCGGGGGAGTTCGGCGCGCTGGCGGTGCTGGCCAACGCCGGCGAGATGGTCTACTTCTTCTTCGACCACTTCACGTGG
CTGTCCCGCGTGGGCGTGCTGGAGCCCTGGCTGGCGCGCCGCGCGAGCTTCGTGTCGGCCTTCGGCGAGTGCGTCGGCTA
CGTCTTCTTCATCGCCATGGACTTCATCGTGATCAGGCGCGGGATCAGGCGGGAGAGGGCGCTGCTGCGCGGGGAAGGCG
GTGGCGAGGGGAAGGAGAAGGAG---------GGCGAGGTGAGGATGATCCGGGCGGACCGGGTGATGCGGCTGATGGGG
ACGGCGGCGAACCTGGCGGACCTGGTCATCGGCGTCGCGGACATCGAGCCCAACCCGTTCTGCAACCACGCCGTCACGCT
GGGGGTCAGCGGCCTCGTCTCCGCCTGGGCTGGCTGGTACAGGAACTGGCCGTCGTGAG---------GTCGGATCGGAT
AGGCGTTCCGACCGGCAAGATGTA---TGTAAAGAATGTACGCTTACCGCGGTAATTATTTTCTCCT---ATTACGAGAC
TGTTATATGGCAGAGTTCTGGCAGCACACTTCCAACCTCCTTCAGCATAGACTACC--------ATAACAGTCTTAC---
-------ATAGCCTGCTGAATGCTGACCCAAAGCAAATGGGGAAGAAGGTGCGAGCTCAAG-TTACTTAGAGCACCTAAT
CTACGGGTGCAACGCCCAGTCAATAATTACTTACTTTTGGATTCTTTTCGAGATAGGTTACCACATCCTGTATCACATAT
GCCATGAGGTCAATAATTACTTCGGCGGATAGTGTTTCG--CCAAACATCAGCTAGTTAGCGGTGACCAAGCCGAATCAC
CCGAAATGCCG----AGGGCGCCGTCACTGCTAGGCCGGGGCAGGGCTCAGCTGGTGAGCGCCGAGAGCACGCCGCCACC
GCTCTTGGAGGCCATCACGACCTCCCAGCCAGGCCCTTTCAGGGGGATAAGAGGGGTGGCATCGGCGGCGGCAGGCGGGC
CGGTGAGGTCGCTCCGGTCCATCACCTTCAGAAGGTCCTCGTCGCTGATGTCGGTCTGGATCATCCTGTCTTCCTCGTCC
TGCTCGTCCCTCAGCAGCGCAAGCAGCTCCTCCTCCTGTATTTATCAACAACGTAGCAGAACAAATCAGTGATCATTCCC
AGTTGCTTTGCTTCTGTTTT------------------------------------------------------------
----------------------------------T-CTACTTTTAGTGTTTCCTTTCCGAATAA----------------
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-------------------ACAATT-TACGCAGTAGACTAAAACACAA--TCTACACTCGAGGCGAAA-ATCTTTACATC
TAAGACGTTAGGCTTCGCGCTA--------TTCTGTTCAAACTGTCCCTTCCCAATCACAACGTGCTCCAGCTTCAGCTT
TCCAAAAGCTCTCTTGATAATACGTCCCTGCGACAATAAGGAGGTGAGGAGCGATGCCACGGAATATAGCCTAGCAAG--
--AGTCTGAAGGTCGTCCATC---CATACCTCAACAG
>chr2B_610
ATATTT--------------------------------------------------------------------------
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------------------------------------------------------TTCGATACTAATATTACTCTCGGAAG
GCAAAATGCAGTACGCTGGTGGTCGACGGAATAAAGATAAAGCAGAATCTAGCCACAAAAAAGCATAAAGGAAAAGTAAA
GTAATGAACCGATCAAGCAAGCAAACAAAAATGTTTGTTTCCTCCTCGGCCCTCTCAATCCATCCTTGATCGCGACCTCC
AGAAAATCACTCACCCATGGCGCAGACGACAAACGCATCCCAGCCAAGTGCCCGCCACGGCCCTTTATCCCCACCCAGCC
ACACACATCTACCCATCGCGTCCATTTCCCACAC--------------TCCATCTCTCCAAATCGACCTCCCACGCACGC
GCGCGCGCGCCTCCCCTGACCCCGCAGAGCTCCCCAGCCCAACCCGCCGCAGCAGCGGCACGCGAG-CGATCGGCCGCCA
TGAGCGGCGGCGGCGCCGGCGACACGCTGGACAAGCTGGTGGTGTTCCTGGCGAAGCGCGACGGCGTCGACAAGCTGGTG
AAGACGTACCAGTACGTGGCGAAGCTGGCGCACTGGGCGGCGGAGACGTCGCACCCGGGGCTGGCGGGGCGCGCCAAGAG
CTGGGAGACGGCGGCCGGGCTGAGCCGCAAGGTGTTCCGGTCGGGCCGGTCACTGACGGGCTTCAACGCGCTGCGGCGGT
CCCCGGGGGAGTTCGGCGCGCTGGCCGTGCTGGCCAACGCCGGCGAGATGGTCTACTTCTTCTTCGACCACTTCACGTGG
CTGTCGCGCGTGGGCGTGCTGGAGCCCTGGCTGGCGCGCCGCGCGAGCTTCGTGTCGGCGTTCGGCGAGTGCGTCGGCTA
CGTCTTCTTCATCGCCATGGACTTCATCATGATCAGGCGCGGGATCAGGCGGGAGAGGGCGCTGCTGCG---------CG
GCGGCGAGGGGAAGGAGGAGGAG---AGGGAGGGCGAGGTGCGGAGGATCCGGGCGGACCGGGTGATGCGGCTCATGGGG
ACGGCGGCCAACCTGGCGGACCTGGTCATCGCCGTCGCGGACATCGAGCCCAACCCGTTCTGCAACCACGCCGTCACGCT
GGGGATCAGCGGCCTCGTCTCCGCCTGGGCTGGGTGGTATAGGAACTGGCCGTCGTGAGCTGAACTGGGTCGGATCGGAT
AGGCATTTCGACCGGCAAGATGTA---TGTAAAAAATGTACGCTTACCGCGTTAATTATTTTCAACT---ATTACGAGAC
TG-TATATGGCAGAGTTCTGGCAACACACTTACAACCTCCTTCAGAATAGACTACCCTAAGTGCATAACAGTCTTACTAC
ATACAGTATAGCT-------TGCTGACCCAAAGCAAATGGGGAAGAAGGTGCGGGCTCAAGTTTAGTTAGAGCACCTAAT
CTACGGGTGCAACGCCCGGTCAATAATTACTTCCTTTTGGATTCTTTTCGAGATATGTTACCACATACTGTATCACATAT
GCCATGCGGTCGATAATTACTTGGGCGGATAATGTTTTCCCCCAAACATCAACTAGCTAGCGGTGACCAAGCCGAATCAC
CCGAAATGCCG----AGG-CGTCGTCGTTTCTAGGCCAGGGCGGGGCTCAGCTGGTGAGCGCCGAGAGCACGCCACCACC
GCTCTTGGAGGCCATCACGACCTCCCAGCCAGGCCCTTTCAGGGGGATAAGAGGGGGGGCATCGGCGGCGGCAGGCGGCC
CGGTGAGGTCGCTCCGGTCCATCACCTTCAAAAGGTCCTCGTCGCTGATGTCGGTCTGGATCATCCTGTCTTCCTCGTCC
CGCTCGTCCCTCAGCAGCGCAAGCAGCTCCTCCTCCTGTATTTTCCAACAAAGTAGCAGAACAAATCAGTGATCATTCCC
AGTTGCTTCGCTTTTGTTGTTACTCCCTCCGTCCCATAATGTAAGATGGTTTTTGACACTATACTAGTGTTAAAAAAGTG
TCAAAAAACATCTTACATTATGGGACGGAGGGAGTACTTCTTTTGGTGTTCCATTTCTGAATATACTCCCTCCGTTCGGA
AATACTTGTCATTCAAATGGATGTATCTAGATGTATTTTAGTTTTAGATACATCCATTTTCATTCATTTTGATGACAAGT
AATTTCGGACGGAGGGAGTACAATT-TATGCAGTAGACTAAAACACAA--TCTATACTCGAGATGGAA-ATCTTTACATC
TAAGACGTTAGGCTTCGCGCTA--------TTTTGTTCAAACTGTCCCTTCCCGATCACAACGTGCTCTAGCTTCAGCTT
TCCAAAAGCTCTCTTGATAATCCGTCCCTGCGACAATGAGTAGGTGAGCAGCGATGCCACGAAATACAGCCTAGCAAG--
--AGTCTGAAGGTCATCCATC---CATACCTCAACAG
>chr7A_2126
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--------------------------------------------GGCTCAGCTGGTGAGCGCCGAGAGCATGCCGCCACC
ACTCTTCGAGGCCAGCACCACCTCCCAGCCAGGCCCTTTCAGGGGGACAAGAGGGGCGGCACTGGCAGCCGCAGCAGGGC
CGGTCAGGTCGCTCCGGTCCATCACCTTCAGAAGGTCCTCGTCGCTGATATCCATCTGGATCATCCTGTCTTCCTCGCCC
TGCTCGTCCCTCAGCAGCGCCAGCAGCTCCGCCTCCTGCAGTTCTCGACAAAAAGAAGGAACACATCAGCAATCATGCAA
GCAATTGATG----------------------------------------------------------------------
----------------------------------------------------ATCCCTGAAGAG----------------
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-------------------ACAATT-TACACGGTACACCGGACACAATCTTCTATATTCGAGACAGATTTTTTTTACATC
TAAGGTGTTAGGCTTGGCGGCA--------TCTTGTTGAAACTGTCCCTTCCCAATCACCACATGCTCTAGCTTCAGCTT
TCCAAAAGCTCTCTTGATAATCCGACCCTGTGACAATGAGGAGATGAGCCCTGATGCCACAAAACTTAGCCAAGCAAG--
--AGTCTGAAGATCATCCCCTAGACATACCTCAACAG
>chr4A_2126
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--------------------------------------------GGCTCAGCTGGTGAGCGCCGAGAGCATGCCGCCACC
GCTCTTCGAGGCCAGCACCACCTCCCAGCCAGGCCCTTTCAGAGGGACAAGAGGGGCGGCACTGGCAGCCGCAGCAGGGC
CGGTCAGGTCGCTCCGGTCCATCACCTTCAGAAGGTCCTCGTCACTGATATCCGTCTGGATCAACCTGTCTTCCTCGCCC
TGCTCATCTCTCAGCAGCGCCAGCAGCTCCGCCTCCTGCAGTTCTCGACAAAAAGAAGGAACACATCAGCAATCATGCAA
GCATTTGATG----------------------------------------------------------------------
----------------------------------------------------ATCCCTGAAGAG----------------
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-------------------ACAATT-TACACGGTACACCGGACACAATCTTCTATATTCCAGACAGAA-TTTTTTACATC
TAAGGCGTTAGGCTTGGCGGCA--------TCTTGTTGAAACTGTCCCTTCCCAATCACCACGTGCTCTAGCTTCAGCTT
TCCAAAAGCTCTCTTGATAATCCGACCCTGTGACAATGAGGAGATGAGCCCTGATGCCACAAAAATTAGC----CAAG--
--AGTCTGAAGATCATCCCCTAGACATACCTCAACAG
>chr4A_2126
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--------------------------------------------GGCTCAGCTGGTGAGCGCCGAGAGCATGCTGCTGCT
GCTCTTCGAGGCCAGCACCACCTCCCTGCTAGGCCCTTTCAGGGGAACAAGAGAGGTGGCATTGGCAGCCACAGCAGGGC
CAGTGAGGTCGCTCCGGTCCATCACCTTCAGAAGGTCCTCGTTGCTGATATCTGTTTGGATCATCCTGTCTTCCTTGCTT
TACTCATCCCTCAGCAGCGCTAGCAGCTCCGCCTCCTGCATTTCTCGACAAAACGAAGGAATACATCAGCAATCATGCAA
GGGTTTGCTG----------------------------------------------------------------------
----------------------------------------------------ATCACTGAAGAA----------------
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-------------------ACAAATCTACACGGCAGACTGGACACAATCTTCTATGTTCCGGACAGAA-ATTTTTACATC
CAAAGCGTTAGGCTTGGCGGCATCTTGTAATCTTGTTGAAACTGTCCCTTCCCGATCACCACATGCTCTAGCTTCAGCTT
TCCAAAAGCTCTCTTAATAATCCGTCCCTGCGAGAATGGGGAGATGAGCCCGAATGCCACAAAAATTAGC----CAAGCA
AGAGTGTGGAGATCA----------------------
>SNPs
SS-SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
-----------------------------------------------------------------------S--------
------------------------------S-------S-SSS-SSS---------------------------------
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---------------------------------SSSSSSSSSSSSSSS--S-----------------------------
-----------------------------------------------------------S-SS-----------------
----------S------------------------------------------------------S--------------
-----------------------------------------------------------------------S--------
---------------------------------------------S--------S-------------------------
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--------------------------------------------S-----------------------------------
--------------S-----------------------------------------------------------------
-----------------------SSS------------------------------------------------------
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------------S-----------------S--S-----------------------------S--S--------S----
------------------------SSS----------------------------------------SSS----------
----S---------------------------------------------------------------------------
-----------------------------------------S--------------------------------------
------------------------------------------------------------S-------------------
-------------------------------S--S----S--S-------------S-----------------------
----------SSSSS-------------S-----------S---------------------------------------
---------------------------S----------------------------------------------------
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------------------------------------------------------------S---------S---------
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----------------------------------------S--------------------S------------------
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--------------------------------------S-----------------SS------S---------------
------S--------------S----------------------S-----------------------------------
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--------S----------------------------
>forward_261
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-ATCAATCTTCGGACTCGCCC-----------------------------------------------------------
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>reverse_1744
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---------------------------------------------------------------GCTCGGTCGGATTGGAT
AGG-----------------------------------------------------------------------------
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