>input_sequence_71641
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-----------------------------------------------------------------------ATGGCAATG
GTGGTGAAGGCCGTCCTCGTTGCCGTCGTGGCCGTGGCAGCGCTTGCGCAGCTCACCGTGGCAGTGGATCACCAGGTGGG
CGGCAGCGGCGCGACCTGGGCCACCAGCGGCGGCTACGACTCGTGGTCGGGGAAGCAGAAGTTCTCTCCGGGAGACAGCC
TGGGTA--------AGCTCACT-CCCTACTCGATCTACTAGCTCTTGGCAGCTAGGATTATATCAAGAACCGACCTGACA
AACTTGTTGCGGTCGATGGTTGCAGTATTTTCGTACTCGCCGGCGCACGACGTCGTGGAGGTGAGCAAGGCCGACTACGA
CGCCTGCACGGCCACCAAAGTCGTCGCCAGATACACCGGCGGCAAGACCACCGTCAAGCTCACCACTGCCGGGAAGCGCT
ACTTCATCTGCAGCATCACCGGCCACTGCGACGCCGGCATGAAGCTCCAGGTGAACGTTGCCGCCGCAACCGCCGCCCCC
ACGAAGCCCAGGGGCCAGAGGAGCGTCGCCCCTGTCGCCGCCCCGGCGCCGGCACCGGAGCGGTCGTCCACCGACGAGCA
GCTGCCGACAGTGTCGTCGCCTACGGGGACACCGACGCCCAGTTCACCGTCCGGCTCGGGCGCCGCCAGCATTAATGCGA
GCGCTGCGGTGGCGCTCGCCATGGGCATGGCTGTGGTGTTGGGCATGTGA------------------------------
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>chr2B_1_TraesCS2B01G284700
GGTAATTATAAAGCTATATGCAAAATACCCTATATTTGTACTATATATTGCTCGCTTGTTCGTTTTCGTCATAAACTTCA
ACGACTTTCCTAATCATTTGGAGATAAAACATACTCCCTCCGTCCGGAATTACTTGTCATAGAAATGGATAAAAATGGAT
GTATCTAGAATTAAAATATGTCTAGATACATCAATTCCTCCGACAAGTATTTCCGGACGGAGGGAGTATTTATGTTTGAA
TCAATCTATACAAGATTAAATGAATGTAAAATTATAACTTAGACTATAAAATGCAGTAAAGTTAAGCGGAAATCAACACT
TAAATTATATTGCAAATTAAGATCTGGTATTGTGTAAATTCAGGTGACTAAGATATAAAACTATTTTAGGTGGGAAACCG
AAAATGAAGAACAAAAGTAATTACAGATGTGTGAGAG-------------------------------------------
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------------------------------------------------------------------GTTGCAAGCGTCCA
AGAAATTTGGAATAACATAATTTGGGCGTGGAAGCCATGAAACACGTCGAGTAGGTAGGGTGCCCAACTTTTGGCACTCC
CGCATAACGTGGGAACCTGCAAACAAACATCCCCAACTAACAAAGAGCGGGGGGCTAAAAAATGCAATGTACTACCAATG
AGTAGCAGTTGTTGAGCACGACTGTGCAGTGTGCACATGGGCA--GTGCTAAGCATTTTCTTTTCTGCGAGCAAGCAAGG
AAGCTGCAGCAATGCATGCATAATAATGGAGAGTTGTTGAAGCTCGATAGCTAGCTAGCTGCAAGCTGGGGGTCAAAGGA
CTTGCCGCGTCCGGTCACCAACCCCTTCCCAGTTCACCCCGCCGCGCGCGGCCGTCAACCATGTCAGGCATGACGACGTA
CGGCCTGCAGCTCCATCTATATAAGCAGCAGCTCGCCAGCTAGATAGCTCCACAATCGTCCCAGATCTCAAGCTCTCAAC
TCTCCTCACCTCGCATCTCAAACAGTCTTCTCTTTTCGGTTGGCATAATTGCTAGAAGCAGGGCTCTATCAATGGCAATG
GTGGTGAAGGCCGTCCTCGTTGCCGTCGTGGCCGTGGCAGCGCTTGCGCAGCTCACCGTGGCAGTGGATCACCAGGTGGG
CGGCAGCGGCGCGACCTGGGCCACCAGCGGCGGCTACGACTCGTGGTCGGGGAAGCAGAAGTTCTCTCCGGGAGACAGCC
TGGGTA--------AGCTCACT-CCCTACTCGATCTACTAGCTCTTGGCAGCTAGGATTATATCAAGAACCGACCTGACA
AACTTGTTGCGGTCGATGGTTGCAGTATTTTCGTACTCGCCGGCGCACGACGTCGTGGAGGTGAGCAAGGCCGACTACGA
CGCCTGCACGGCCACCAAAGTCGTCGCCAGATACACCGGCGGCAAGACCACCGTCAAGCTCACCACTGCCGGGAAGCGCT
ACTTCATCTGCAGCATCACCGGCCACTGCGACGCCGGCATGAAGCTCCAGGTGAACGTTGCCGCCGCAACCGCCGCCCCC
ACGAAGCCCAGGGGCCAGAGGAGCGTCGCCCCTGTCGCCGCCCCGGCGCCGGCACCGGAGCGGTCGTCCACCGACGAGCA
GCTGCCGACAGTGTCGTCGCCTACGGGGACACCGACGCCCAGTTCACCGTCCGGCTCGGGCGCCGCCAGCATTAATGCGA
GCGCTGCGGTGGCGCTCGCCATGGGCATGGCTGTGGTGTTGGGCATGTGAGAGGGATCTGACCGATCCATGGGTACCAAG
GCTTAGTTTTGGAGTGTTTAAGTCTTAATCAT----------------------GTCGATACATTTGCGGATTTGTTCTT
GTTATTCTTGGCTGGCAGTGGCATGCACATTGCCTTCCCTGCATGTTCCTTCCTTCC------TACAGTGCTATCAGGGT
TCAGTGTACTACTGTGCGATTTATTTGTTGTATTTGTCTGTCGGAGAATAAATACAATTCACATTCTTTAGTATCGTCTG
TCTGCGTTATAGTATATCTTGTATATCTTCAGTGTTTTTGTGACAATCCATATATCTTCAGTGTCCTGTTGGTTGGTTG-
GTTCGTTGGACTAGTAACATGTCTCTGTTCAGCACATACAACAACAGAAACCAGAGCAGAAAGCTTCTTTCTTTTGTGCT
TTTTTTCCCCATGCAACCGGCAGGAACATTGCCTATTCGTTAAGTGAGAAACAGAGAG---AGAAATATATGTACAAAGA
GTTGGTGCCTATTTTAGGGGAACACACCTAAACCCTCATAAGAGCAAGTACAATAGAAGGCTATAAGCCTGCTTATAT--
------------GACATTTTTGATTATGTGAAGGAGAGAGACAAAAAAAGTACATAAGT----GCTCTAATGCAAGAGCA
AGTCTCTACACGTGCTTCTAGGTAAAAAAGTTTAATACCAAGAAAAAGTG-GAGAGGAAGTGGAAAAAAGTTGTGACTTA
CACCCAACCTTATAGCCAACTCTATTATATGAGTAACTAATAATGCTAACTTTTGATAACATGCCATGCCTACATAGCTA
GCAACTGGCTATATTATTAACCATGCTCTAAAGAACCCAAGTATTACTGAGGTGTTGCCGCAACGGCCAAGTCCAGGGCA
CTTTGAAAGTCTGCGCCCACTATTTGATGTCCTCAATGTTGTGATTAATTAGCACATGTAATTAGAGGGAAATCTACCCT
TGCTGAAACCTTCATGTGGTTACCTTCCGCAACCGACACCTCTCTCTCT--AGCGTCGCGTCC
>chr2A_1
GGAAATTATAAAGCTATGCG--AAATACCCTATATTTGTAGTATATATTGCTCGCTTGTTTGTTTTTGTCATAAACTTCA
GCCACTTTCCTAATCATTTGGAGATAAAACAG------------------------------------------------
-------------------------------------------------------------------ATTTATGTTTGAA
TCAATCCGTACAAGATTAAATGAATGTAAAATTATAACCTAGACTACAAAATGCAGTAAAGTTAAGCTGAAATCAACACT
TAAATTATATTGCAAGTTAAGATCTGGTATTGTGTAAATTCAGGTGACTAAGGCATAAAACTATTTTAGGTGGGCAACCG
AAAATGAAGAACAGAAGTAATTACAGATGTGTGAGAG-------------------------------------------
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------------------------------------------------------------------GTTGCAAACGTCCA
AGAAATTTGGAATAACATAATTTGGGCGTGGAAGCCATGAAACACGTCAAGTAGGTAGGGTGCTCAACTTTTGTCACTCC
CGCATAACGTGGGAACCTGTAAACAAACATCCCCAACTAACAAAGAGCAGGGGACTAAAATAT-----------------
----GCAGTTGTTGAGCACGACTGTGCAGTGTGCACATGGCCATGGTGCTAAGCATTTTCTTTTCTGCGAGCAAACAAGG
AAGCTGCAGCAATGCAGGCATAATAATGGAGAGTTGTTGAAGCTCGATAGCTAGCTAGCTGCAAGCTGGGGGTCAAAGGA
GTTGCCGCGTCCGGCCACCAACCCCTTCCCAGTTCACCCCGCCGCGGGCGGCCGTCAACCATGTCAGGCATGACGACGTA
CGGCCTGCAGCTCCATCTATATAAGCAGCAGCTCGCCAGCTAGCTAGCTCCACAATCGTCCCAGATCTCAAGCTCTCAAC
TCACCTCACCTCGCATCTCAAACAGTCTTCTCTTTTCGGTTGGCATAATTGCTAGAAGCAGGGTTCTATCCATGGCAATG
GTGGTGAAGGCCCTCCTCGTTGCCGTCGTGGCCGTGGCAGCGCTTGCGCAGCTCACCGTGGCAGTGGATCACCAGGTGGG
CGGCAGCGGCGCGACCTGGGCCACCAGCGGCGGCTACGACTCGTGGTCGGGGAAGCAGAAGTTCTCTCCGGGAGACAGCC
TCGGTACGTATTTAAGCTCACCCCCCTACTCGAC---CTAGCTCTTGACGGCTAGGATTATATCAAGAACCGACCTGACA
AACTTGTTGTGGTCCATGGTTGCAGTATTTTCGTACTCGCCGGCGCACGACGTCGTGGAGGTGAGCAAGGCCGACTACGA
CGCCTGCACGGCCAGCAAAGTCGTCGCCAGATACACCGGCGGCAAGACCACCGTCAAGCTCACCACTGCCGGAAAGCGCT
ACTTCATCTGCAGCATCACCGGCCACTGCGACGCCGGCATGAAGCTCCAGGTGAACGTCGCCGCCGCGACCGCCGCCCCC
ACCAAGCCCAGGGGCCAGAGGAGCGTCGCCCCTGTCGCCGCCCCGGCGCCGGCACCGGAGGGGTCGGCCACCGACGAGCA
GCTGCCGACAGTGTCGTCGCCTACGGGAACACCGACGCCCAGTTCACCGTCCGGCTCGGGCGCCGCTAGCATCGGTGCGA
GCGCTGCGGTGGCGCTCGCCATGGGCATGGCCGTGGCGTTGGCCATTTGAGAGGGATCTGGCCGATCCATGTGTACCAAG
GCT----------------------TAGTTTTGGAGTGCTCAAGTCTTAATCACGTCGATACATTTGCGGATTTGTTCTT
GTTATTCTTGGCTGGCAGTGGCATGCACATTGCCTTCCCTGCATGTTCCTTCCTTCCTACTAGTACAGTGCTATCAGGGT
TCAGTGTACTACTGTGCGATTTATTTGTTGTATTTGTCTGTCGGAGAATAAATACAATTCACATTCTTTAGTATCGTCTG
TCTGCGTTATATATCTTGTAGTATATCTTCAGTATATTTGTGACAATCCATATATCTTCAGTGTCCTGTTGGTTGGCTTC
GTTGGTTGGACTAGTAACGTGTCTCTGTTCAGCAGATACAACAACAGAAACCAGAGCAGAATGCTTCTTTCTTTTGTGCT
TTTTTTTGG--TGCAACCGGCAGGAACATTGCATATTCGTTAAGTGAGAAGCAGAGAGAGAAGAAATATATGTACAAAGA
GTTGATGCGTATTTTAGGGGAACACACCTAAACCCCGCTAAAAACAAGTACAATAGCGGGC--------------TAT--
------------GACATTTTTGACCATGTGAAAGAGAGAGACAAAAAAAAGTAAAAAGTGCGTTCTC--ATGCAAGAGCG
AGTCTCTACACGTGCTTCTAGGTAAAAACGTTTAATAAAAAGAAAAGGTTAGAGAAAAAGTGGAAAAAAGTTGTGACTTA
CACCCAACCTTATAGGCAACTCTATTGTATGAGTAACTAATAATGCTAACTCTTGATAACATGTCATGTCTACATAGCCA
GCAACTAGCTATATTATTAACCATGCTCTAGAGAACAGAAGTATTACTGAGGTGTTGCTGCAACGGCCAGGTCTGGGGCA
CTTTGAAAGTCTGCTCCCACTGTTTGATGTCCTCAATGTTGTGATTAATTAGCACGTATAATTAGAGGGAAATCTACCCT
TGCCCAAACCTTCATGTGGCTGCCTTGCGCAACCGACGCATCTCTTTCT--AGTGTAGCGTCC
>chr2D_368
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-----------------------------------------------CTAAGTTATACAACTATTTTAG--GGGCAATCG
AAAATGAAGAACAAAAGTAATTACAGATGTGTGAGAGTAGGGATGAAAACGGCGCGGAAACGGACGGAACTGGGTGCTAC
CATATTTGTTTTTATATTTTTTTGCAGAAGTGAAAACGAATACAGAAACCCCGGAAACCAATGCGGAAACAGATACTACC
GGAAACAAACACGGAGCGAATACAGAGCAGACACGGAAACAAAACTATTTGTTGACCGGAACTTAAAACCCCCTTAAATC
ATAGAGAAATACACACAAAACACAAACAAATTGATGGAATTGTTAACATGGCTACAAAATAATATGGTTGTGTTGGTATA
ATAGGGTAGTATTGTAGTAGTACATGGCAATTCCGTATAGGGTCTAGTTGAGTATGTGTGTGGTAGTAAAACTTGGTACT
TAAATAATACATTCTGCTCATTTTATTCACTGTGTCATTGTGTATTGTTTGGTATTTGGGCTACAAAGCAGCCATGGGCC
AATAATAGAAACGGAAATTCCATATTAGCGGAAACGGAAAGTTCCGTTTCCACGTGTATTCCACATGAAAACACCATTCC
GTTTTTGTTTTCGGTTCCGCATAAAAAATTCCATTTTCATTTCTGTTTTACAAATTTTCGTTTCCGTTTTCATATTTCCT
CTCCGTTTCCATTTTCCTTCCGAAAAAGCGGAAACTTTCCAATCCATTTTCATCCCTATGTGAGAGGTTGCAAGCGTCCA
AGAAATTTGG-ATAACATAATTTGGGCGTGGAAGCCATGAAACACGTCAGGTAGGTAGGGTGCCCAACTTTTGGCACTCC
CGCATAACGTGGGAACCTGTAAACAAACATCCCCAACTAACAAAGAGCAGGAAACTAAAATAGGCAATGTG---CCAATG
AGTAGCAGTTGTTGAGCACGACTGTGCAGTGTGCACATGGCCATGGTGCTAAGCATTTTCTTTTCTGCGAGCAAGCAAGG
AAGCTGCAGCAATGCATGCATAATAATGGAGAGTTGTTGAAGCTCGATAGCTAGCTAGCTGCAAGCTGGGGGTCAAAGGA
GTTGCCGCGTCCGGCCACCAACCCCTTCCCAGTTCACCCCGCCGCGCGCGGCCGTCAACCATGTCAGGCATGACGACGTA
CGGCCTGCAGCTCCATCTATATAAGCAGCAGCTCGCCAGCTAGCTAGCTCCACAATCGTCCCAGATCTCAAGCTCTCAAC
TCACCTCACCTCGCATCTCAAACAGCCTTCTCTTTTCGGTTGGCATAATTGCTAGAAGCAGGGTTCTATCCATGGCAATG
ATGGTGAAGGCAGTCCTCGTTGCCGTCGTGGCCGTGGCAGCGCTTGCGCAGCTCACCGTGGCAGTGGATCACCAGGTGGG
TGGCAGCGGCGCGACCTGGGCCACCAGCGGCGGCTACGACTCGTGGTCGGGGAAGCAGAAGTTCTCTCCGGGAGACAGCC
TGGGTACGTATTTAAGCTCACTCCCCTACTCGAC---CTAGCTCTTGACGGCTAGGATTATATCAAGAACCGACCTGACA
AACTTGTTGCTGTCGATGGTTGCAGTATTTTCGTACTCGCCGGCGCACGACGTCGTGGAGGTGAGCAAGGCCGACTACGA
CGCCTGCACGGCCAGCAAAGTCGTCGCCAGATACACCGGCGGCAAGACCACCGTCAAGCTCACCACTGCCGGAAAGCGCT
ACTTCATCTGCAGCATCACCGGCCACTGCGACGCCGGCATGAAGCTCCAGGTGAACGTCGCCGCCGCAACCGCCGCCCCC
ACCAAGCCCAGGGGCCAGAGGAGCGTCGCCCCTGTCGCCGCCCCCGCGCCGGCACCGGAGGGGTCGGCAACCGACGAGCA
GTTACCGACAGTGTCGTCGCCCACGGGAACACCGACGCCCAGTTCGCCGTCCGGCTCGGGCGCCGCCAGCATCGGTGCGA
GCGCTGCGGTGGCGCTCGCCATGGGCATGGCTGTGGCGTTGGCCATGTGAGAGGGATCTGACCGATCCATGGGTACCAAG
GCT----------------------TAATCAT----------------------GTCGGTACATTTGCGGATTTGTTCTT
GTTATTCTTGGCTGGCAGTGGCATGCACATTGCCTTCCCTGCATGTTCCTTCCTTCCTA------CAGTGCTGATAGGGT
TCAGTGTACTACTGTGCCATTTATTTGTTGTATTTGTCTGTCGGAGAATAAATACAATTCACATTCTTTAGTATCGTCTG
TCAGCGTTATAGTATATCTTGTATATCTTCAGTGTTTTTGTGACAATCCATATATCTTCAGTGTCCTGTTGGTTGGTTG-
GTTGGTTGGACTAGTAACGTGTCTCTGTTCAGCAGATACAACAACAGAAACCAGAGCAGAAAGCTTCTTTCTTTTGTGCT
TTTTTTTCTCATGCAACCGGCAGGAACATTGCCTATTCGTTAAGTGAGAAGCAGAGAGAGT---AATATATGTACAAAGA
GTTGGTGCGTATTTTAGGGGAACACACCTAAACCCCGCTAAAAGCAAGTACAAAAGCAGGC--------------TATAA
GCCCGCTTGCATGACATTTTTAACTATGTGAAGAAGAAAGACAAAGAAAAAGCGAAAGAGTAGGCTCTAATGTAAAAGCG
AGTCTCTACACGTGCTCTTAGGTAAAAACATTTAATAAGAAGAAAAAGATAGAAAGAAAGTGGAAAAAATGCGTGACTTA
CACCCAACCTTATAGCCAACTCTATTGTATGAGTAACTAATAATGCTAACTCTTAATAACATGTCATGTCTATATAGCCA
ACAACTGGCTATATTATTAACCATACTCTAAAGAACAGAAGTACTACTGAGGTGTTGCCGCAACGGCCATGTCAGGGGCA
CTTTGAAAGTCTACTCCCACTGTTTGATATCCTCAATGTTGTGATTAATTAGCACATAGAATTAGAGGAAAATCTCCCCT
TGCCTAAACCTTCATGTGGTTGCCTTCCGCAACCGACGCATCTCTCTCTCTAGCGTCGTGTCC
>SNPs
--S--------------SS-SS------------------S-------------------S-----S-------------
S-S----------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------
------SS------------------------------S-------S--------------------S------------
---------------S------------------------------------S---------------------S-----
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------------------------------------------------S-------------------------------
-------------------S----------------------------S----S------S---------SSSS------
----------------------------------------S---------------------------------------
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S-------------S-----------------------------------------------------------------
-------------------------------------------S------------------------------------
--S------------------------------------------------------------S------S---------
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---------------------------------SSSS----------S-S------------------------------
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--------------S---------------------------------------------------------S-------
----------------------------------------------------------S---------------------
--S---------------------------------------------------------S-----S-------------
---------------------------S--------------------------------------------SSS-----
------------------------------------S-----S-------------------------------------
---SSSSSSSSSSSSSSSSSSSSSS-------------------------------------------------------
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---S--------------S---------------S---------------------------------------------
------S-S-----------------------------------------S-----------------------------
--------S--------------------------SSS---S--------------S----SSSSSSSSSSSSSS-----
-----------------------S-------------------------SSS--S------------------------S
----------------------------S--------SS----------S------S-----------------------
--------------------------S------------------------S-----------S----S---------S-
------------------------------------SS-------------------------------S---SS-----
--------------S------S-----------------------------------S----------------------
---SS----------------S---------------S-S-----------------------
>forward_131
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-------------------------------TACTCCCTCCGTCCGGAATT-----------------------------
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>reverse_2357
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------------------------------------TGTTGGGCATGTGAGAGGGA------------------------
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>forward_134
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----------------------------------TCCCTCCGTCCGGAATTACT--------------------------
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>reverse_2363
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------------------------------------------GCATGTGAGAGGGATCTGACC-----------------
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>forward_227
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-----------------------------------------------TATTTCCGGACGGAGGGAGT-------------
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>reverse_2755
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----------------------------------CATACAACAACAGAAACCAGAGCA----------------------
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