>input_sequence_71636
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--------CGCAAGTGCAAAGTAGCTCATACATCCAT-----------------CTCAGCTCCTCCACCGACCACCAGAC
CCAGATCGATGGCTTCCTCATCCGTGCTGCTCGGAGGAGGCGCGGG------CGCCGCCGCCTTCACCGGCGCCGCCGCC
GGCAAGGCTCTTCCCAGGCCGTGCTTCCTCGCCGCTCGTCCCCACACCGTCAGCGGCGGCCGCCTCTGCCTGCAAACCCC
TCCTAGGGCGACTCCCGTACGTGCACTTGATGTTATTACTACCAC-----------------------------------
-------------------------------------------ACT--CTGGTG-TTTGTTCTTTGCGATGTTACGTATG
CTGACTGTTCATTGGTTCATTCGTGCGTCAGGCTAACGACGCCGTCGAGACCGTGAAGGGGGCGGCCGGGGAGGCCGGAG
ACAAGGCCTCGGAAGGGGCGGACAGCGTGTCGAAGGCGGCGGGCGACGCGGCGGGCAAGGTTCAGGAGGCGGTGGAGGGC
GCGGTGGAGGGAGCCAAGGACCTCGGCGAGAAGGCCAAGCAGGCGACGGAGGAGGCGTGGGACGCCACCAAAGACGCCGC
GCAGGGCGTCGCCGACGACGTCACCGCCGCGGTTGAGGATGTGAGCAAATGAGCTCAACATTTGCGTATCAGCTTTTCAG
TTCGCCGATTGGATATTGAACATGCATGATGTGCATGCGAGTGTCTGTTTTGTGGATCTCATAATTAATGATGTATGCTT
TG------------------------------------------------------------------------------
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>chr2A_1_TraesCS2A01G427100
TTTGTCTCTCTTAGAACTTTTAATTTTCACTTCAAATACGACAAAATAAAAATAAAAAAACATTTGAAAGCCCTAAATAT
CTGGATAGATGAGCTTAGATTCTTCAAGAATACTAAGGACCTTCGATTGATTTACT--AAAAAAAATCCTTTTTCCAGTA
AACATTGAATTTGCACCTCAAATTTGGTAGAAATTTGATAAGCATAGTCCAAACTCCTCAATGGCCAAGGAAAGAATGTA
GCTAAAACTTTTCCAGAATACTAACTGGAAATATCTTGGTTTACTAGAACATTTTCATTTGACTGTTAACTTTGAATTTT
CATCTCAAATTTGACCAAAACTTGAAAAAAAAAACACTGATGAGTAAGTTGGCTAAGGCAAGGCTGAAAGGGTCGTGCCC
CGCCCAGCCCATGCTATTTTTTTAAGTGCATATTTCGTTTTCGGCCATGAAACACAATCCCAATAATTATTTTCTACTGT
CGGCCTGTCCAGCTTTCGAGGCCAAGCTCCGCCACTGCTTGAGTGCGTATACGTACGTTAAACCTCGTTGATAACTAATG
GTTTTGCTAATTCGTATTTGCAGTTTTATGCTTTCAAAATCTACAATCTGCGATCGAGTTGAGCACACCGAGACCGGCGA
TGAGTGATGACACCTCT-GGCAAGTTAATATCTCTTGCTCGGATGTATGTGACCTTCAACTTCAACCGTGTACACCAGGA
TTTGGTTTTTTCGATCCGTCCCAAACAGGCCTAAAGGTACGTGAGGTCGGCAGGCATGGGCAGATTAAGATTCGTTTCTC
TTTCTTCTCTCGGCAAACCCTTCACGAGCATGGCTACCGCGCGCG-CCACACAAACGGTCGACAGTCACGCACGCACCGC
CGCACCACACAACCCTGTCGACCACCCCGTGTCGCCATGCGCCCGCAGCGA-----------------------------
----TCCCCGTGGCCCCCTCCGTCCA----------CCCCCGGCCTACAAAACC-GGCACTGCACCTCTCGTCCTCCCAC
CGTACTACCGCAAGTGCAAAGTAGCTCATACATCCAT-----------------CTCAGCTCCTCCACCGACCACCAGAC
CCAGATCGATGGCTTCCTCATCCGTGCTGCTCGGAGGAGGCGCGGG------CGCCGCCGCCTTCACCGGCGCCGCCGCC
GGCAAGGCTCTTCCCAGGCCGTGCTTCCTCGCCGCTCGTCCCCACACCGTCAGCGGCGGCCGCCTCTGCCTGCAAACCCC
TCCTAGGGCGACTCCCGTACGTGCACTTGATGTTATTACTACCAC-----------------------------------
-------------------------------------------ACT--CTGGTG-TTTGTTCTTTGCGATGTTACGTATG
CTGACTGTTCATTGGTTCATTCGTGCGTCAGGCTAACGACGCCGTCGAGACCGTGAAGGGGGCGGCCGGGGAGGCCGGAG
ACAAGGCCTCGGAAGGGGCGGACAGCGTGTCGAAGGCGGCGGGCGACGCGGCGGGCAAGGTTCAGGAGGCGGTGGAGGGC
GCGGTGGAGGGAGCCAAGGACCTCGGCGAGAAGGCCAAGCAGGCGACGGAGGAGGCGTGGGACGCCACCAAAGACGCCGC
GCAGGGCGTCGCCGACGACGTCACCGCCGCGGTTGAGGATGTGAGCAAATGAGCTCAACATTTGCGTATCAGCTTTTCAG
TTCGCCGATTGGATATTGAACATGCATGATGTGCATGCGAGTGTCTGTTTTGTGGATCTCATAATTAATGATGTATGCTT
TGTATAAGAGCTACAACGTTGGTCAAAAGTTGTGCTAA--GAGCATCTACAACTGAACATCTCATGCCCGTCGCAAATGT
CCAGACGGGCTGCCAGAAAAAACGTCACTCAACACCC-----CATATCCGACCCAAACAACTGGATTGATAGGCACTCCT
CTTACCTAGTTCATATCTAGGGCGGATATGAGGATGCCTGAACGCGCCCGTCATGCCGGACTGATCACAAGAGCCCACGC
ATCACACGCAGAGACCGGCGGTCTGACGAACGCTTCCTCCAGTTCTCGGTGTGGATGAATTCATGGTGCCGCGTGGCGTC
GGTCCGACGGACGCCTCCTCCAGTTCTCGGTGTGAATGCATTCATGGTGCCGCGTGGCGTCGCTCCGGCATGCCGCCCGA
GGGAGCAAGTCTATCTATTTAAGCCGAACAGTGGCAGTGAAACCCTAGCC--TCCCCATTCCTTCCCACTCGCGCCGCAA
CTTCCATCCGCCCTGTAGCCGCTAGCCATGGCCCGGGAGAGGATCACCACCTATCCAATGTCGATGCCGGCACGTCGATT
GTAGCTCGAGGAGGATATCCGGGCCAGGCGCGCCGCTCGTGTCACTATCGGTCTGCCTCCGAATTCGCCAGAGCCAGAGG
AAAAGGAGGAGGAAGCGTGGCAGCAAAAGGAAGCGGATTAGGACCCCCA-CCCATGGAGGAGGAGGAGGATCTGGAAGCG
GACGACGCGG------CGGAGTCGGAGGAGCAGAGACCGCAGGCTTTGCCATGGAGAACGCCATGGCGGAATTCGAGGTC
GCCCAGGCAGCGAAGATGGCGAAGCAGACTGCCATCCTTAAATTCATCCAAGATGAGGCCTATATGGAGTCCAACCGCCC
AAGC-TTGCACCGACCCTTCTAATACTCTTCCAATATGCATCATCATCATCATCCAAACATCAACCCTTTGCTCATCTTG
GA-AATACACCCTATGGAAAACCTCACCCACAAATCAGTACTAGGCCACTATTTACCTAT-
>chr2D_1
TTTGTCTCTCTTAGAACTTTTAATTTTCACTTCAAATACGGCAAAAAAAAATC--AAAAACATTTGAAAGCCCTAAATAT
CTTGATAGATGAGCTTAGATTCTTCAAGAATACTAAGGACCTTCGATTGATTTACTGAAAAAAAAATCCTTTTTCCAGTA
AACATTGAATTTGCACTTCAAATTTGGTAGAAATTTGATAAGAATAGTCCAAACTCCTCAATGGCCAAGGAAAGAATGTA
GCTAAAACTTTTCCAGAATACTAACCGGAAACATCTTGGTTTACTAGAACATTTTCATTTGACTGTTAACTTTGAATTTT
CATCTCAAATTTGGCCAAAACT-----AAAAAAACACTGATGAGTAAGTTGGCTAAGGCAAGGCTGAAAGGGCCGTGCCC
TGCCCAGCCCATGCTATTTTTTGTAGTGTATATTTCGTTTTCGGCCATGAAACACAATCCCAATAATTATTTTCTACAGT
CGGCCCGTCCAGCTTTCTGGGCCAAGCTCCGCCACTGCTTGAGTGTGTATACGTACGTTAAACCTCGTTGATAACTAATG
GTTTTGCTAATTCGTATTTGCTGTTTTAGGCTTTCAAATT-TACAATCTGCAATCGAGTTGAGCACACCGAGACCGGTGA
TGAGTGATGACACCTCTTGGCAAGTTAATATCTCGAGCTCGGATGTA-----CCTTCAACTTCGAACGTGTACACCAGGA
TTTGGTTTTTTCGATCCATCCCAAACAGGCCTAAAGGTACGTGAGGTCGGCAAGCATGGGCAGATTAAGATTCGTTTCCA
TTTCTTCTCTGGGCAAAACCCTCACGAGCATGGCTGCCGCGCGCAACCACACAAACGGTCGACAGTCACGCACGCACCGC
CGCACCACACAACCCTGTCGACCACCCCGTGTCGCCATGCACCCGCAGCGATCGCGGCTCCACGTACGGGACGTGGAGCC
TCCCTCCCCGTGGCCCCCTCCGTCCATATGCACGCGCCCCCGGCCTACAAAACA-GGCACTGCACCTCTCGTCCTCCCAC
CGTACCACCGCAAGTGCAAAGTAGCTCATACATCCATCGGCGCCAGACTACTGACTCAGCTCCTCCACCGACCACCAGAC
CCAGACCGATGGCTTCTTCTTCCGTGCTGCTCGGAGGAGGCGCGGG------CGCCGCCGCCTTCACCGGCGCCGCCGCC
GGCAAGGCTCTTCCCAGGCCGTGCTTCCTCGCCGCTCGTCCCCACACCGTCAGCGGCGGACGCCTCTGCCTGCAAACCCC
TCCTAGGGCGACTCCCGTACGTGCACTTGATGTTATTACTACCAC-----------------------------------
-------------------------------------------ACTTGCTGGTGTTTTGTTCTTTGCGATTTTACGTATG
CTGACTGTTCGTTGATTCATTCGTGCGTCAGGCTAACGACGCCGTCGAGAACGTGAAGGGGGCGGCCGGGGAGGCCGGAG
ACAAGGTCTCGGAAGGGGCGGACAGCGTGTCGAAGGCGGCGGGCGACGCGGCGGGCAAGGTACAGGAGGCCGTGGAGGGC
GCGGTGGAGGGAGCCAAGGACCTCGGCGAGAAGGCGAAGCAGGCGACGGAGGAGGCGTGGGATGCCACCAAAGACGCCGC
GCAGGGCGCCGCCGACAACGTGACCGCCGCGGTCGAGGATGTGAGCAAATGAGCTCAACATTTGCGTATCAGTTATTCAG
TTGGCCGATTGAGTATTCAACATGCATGATGTGCATGCGAGTGTCTGTTTTGTGGGTCTCATCATTAATGATGTATGCTT
TGTATAAGAGCTACAACGTTGGTCAAAAGCTGTGCTAAGA----------------------------------------
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>chr2B_601
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------------------------------------------ACAATCTGCGATCGAGTTGAGCACACCGAAACCGGTGA
TGAGTGATGACACCTCT-GGCAAGTTGATATCTCGAGCTCGGATGTATGTGACCTTCAACTTCAACCGTGTACACCAGGA
TTTGGTTCTTTCGATCCATCCCAAACAGGTCTAAAGGTACGTGAGGTCGGCAAGCATGGGCAGATTAAGATTCATTTCCA
TTTCTTCTCTGGGTAAAACCCTCACGAGCATGGCTGCCGCGCGCAACCACACAAACGGTCGACAGTCACGCACGCACCGC
CGCACCACACAACCCTGTCGACCACCCCGTGTCGCCATGCACCCGCAGCGATCGCGGCTCCACGTACGGGACGTGGAGCC
TCCCTCCCCGTGGCCCCCTCCATCCATATGCACGCGCCCCCGGCCTACAAAACGGGGCACTGCACCTCTCGTCCTCCCAC
CGTACTACCGCAAGTGCAAAGTAGCTCACACATCCATCGGCGCCAGACTACTGACTCAGATCCTCCACCGACCACCAGAC
CCAGACCGATGGCTTCTTCTTCCGTGCTGCTCGGAGGAGGCGCGGGCGCGGGCGCCGCCGCCTTCACCGGCGCCGCTGCC
GGCAAGGCTCTTCCCAGGCCGTGTTTCCTCGCCGCTCGTCCGCACACTGTCAGCGGTGGCCGCCTCTGCCTGCAAACCCC
TCCTAGAGCGACTCCTGTACGTGCACTTGATGTTATTATTACTTTCTCTGTAAAGAAATATAAGAATGTTTAGATCACTA
CTAACAATGATCTAACACTCTTATAATTTTTTACGGAGAAAGTACTTGCTGGTG-TTTGTTCTTTGCGATCTTACGTATG
CTGACTGTTTGTTGATTCATTGGTGCGTCAGGCTAACGACGCCGTCGAGACCGTGAAGGGGGCGGCCGGGGAAGCCGGAG
ACAAGGTCTCGGAAGGGGCGGACAGCGTGACGAAGGCGGCCAGCGACGCGGCGGGCAAGGTACAGGAGGCGGTAGAGGGC
GCCGTGGAGGGAGCCAAGGACCTGGGCGAGAAGGCGAAGCAGGCGACGGAGGAGGCGTGGGACGCCACCAAAGACGCCGC
ACAGGGCGTCGCCGACGACGTCACCGCCGCGGTTGAGGATGTGAGCAAATGAGCTCAACATTTGCGTATCAG--------
-------ATTGAATATTTAACATGCATGATGTGCACGCGAGTGTCT--TTTGTGGGTCACGTTATTAATGATGTATGCTT
TGTATAAGAGCTACAACGTTGGTCAAAAGCTGTGCTAAAAGAGCATCTACAACCGCACACCCGTA-CCCGTCTCAAACGT
CCAGCCGGGCTATCCAAAGAAATGTCTTCCAATCGGACGTCTCATATCCGGCCTAAACGACCGGATTGATACGCACTCCC
A-TACCTGGCCCATATCTGGGGCGGATCTGAGAACGCGTGAGCATGCCCGCCACGTCAGACTGCG---------------
ATCACACGCAGAGACCGGCGGTCCAACA----------------------------------------------------
---------GACGCCTCCTCTAGTTCTCGGTGCGGATGCATTCATGGCATCGTGTGGCATCGCTCAAGCATGCCGCCCGA
CGGAGCAAGTCTATCTATTTAAGTTGAACGGCGGCAGTGGAACCCTAGCATGTCCCCGTTCTTTCCTACTCGCGCCGCGG
CTTCCATCCGGCCCATAGCCGCTAGCCATGGCCCAGGAGAGGATCACCACCTATGGAATGTCAACACCGGAACACCGGTT
GTAGCTCGAGGAGGAGATCCGGGCCAGGCGTGCTGCTCGTGTCACTGCCGGTCTGCCTCCGAATTCATTAGAGCCAGAGG
AAAAGGAGGAGGAGGTGCAGCAGCAACCGGAAGCGGATTAGGAGCCCCAGCCCATGAAGGAGGAGGAGGATCCGGAAGCG
CACAACGCGGTAGAGCCGGAGGAGGAGGAGCAGATTGCG--GGTTTCGCCATGGAGAACATCATGGCGGAGTTCGAGGTC
GCCCAGGCAGCGAAGATGGCGAAGCAGATTGCCATCCTTGAATTCATCCAAGATGAGGCCTATGTGGAGTCCACTCGCCC
AGGCTTTGCACCGACCCTCCTAATACCCTTCCAATATGCATCATCGTCATCATCCAAACATCAACCGTTTGCTCAATCTT
TGCAATACACCCTATGGAAAACCTCACCCACAAATCAGTACTAGGCCACTGTCTACGCTAT
>SNPs
----------------------------------------S-----S----SSSS-------------------------
--S-----------------------------------------------------------------------------
----------------S-------------------------S-------------------------------------
-------------------------S-----S------------------------------------------------
-------------S--------SSSSS---------------------------------------------S-------
S---------------------SS----S------------------------------------------------S--
-----S-----------SS--------------------------S----------------------------------
---------------------S------S---------S-S------------------------------------S--
----------------------------------SS--------------------------------------------
-----------------S----------------------------------S-------------------------SS
----------S------S--S--------------S--------S-----------------------------------
----------------------------------------S---------------------------------------
-----------------------------------------------------S--------------------------
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-----S----------S--S------------------------------------------------------------
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----------------------------------------------------------------------S---------
----------S---S-----------------------------------------------------------------
------S------------------------------------------------------S------------------
-----------------------------------S--------------------------------------------
------------------------------------------------------------------------S-S-----
--S--------S-----S-------------------------------------S------S-----------------
-----------------------------S-----------------------S-S---S-SSSSS------S----S--
----S------SS-SS--S---S---SSS---SSSSS-------------S--S----S--S---------S-------S
SS-----S-SS-------S--------S----S-S--S---S-SS-----S--S-S-S-----SSSSSSSSSSSSSSSSS
-----------------------SS--SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSS-----------S-----------S-S------------SSS--S-----S------SS-------------
S----------------------SS----S-S-------S---------S-------S---S----S-----------SS
----------S--SS-------------------S-------------------SS------S-SS----S--SS--S--
---------------S--------------S--S------------SS------------------SSS-----------
-------------S-S-SS-------SS---------------S------------S---------------S-------
S--S-----------------SS-----------SSS--SS--S--S------------SS---------S---------
----------------------------S----------S-----------------------S---------SS-----
-S----------------S-------S------------------S--------------------S--------SSS-S
SS------------------------------------------------S-S---SSSS-
>forward_393
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-----------------------------------------------------TAAGGCAAGGCTGAAAGGGT-------
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>reverse_2133
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----------------------------------------------------GGATGAATTCATGGTGCCGC--------
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