>input_sequence_71610
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------------------------------------------------------------------------------AT
GGCGCCATCCGAGTCCCAGCATCTCGCCTTGTTCCTCGCCATCGTCATCACCGCCGCCACGCCGTCCCCCTCGGCGGCCG
CCGTCCCTGCCAAGGCCCCTGCTCCCTCCGCCAGCAACGATGCAGTAGCAAAACCATTGGCATGGTGTATGATTCCTTGC
CTTCCGATCCTGCCACCCATATTATGTGTACCACCGATATTCTGTCCCCCAACGCCAAGTGCGCCGCCGCCGCCATCCCC
TTTCAAGCCGCACCCCAAGGAGTGCCTACCGTCGCTGATGGGGCTGATGCCATGTAAGGATTTCCTCACCAACAGCACCG
CGCCCAAGCCTCCACGCCAAGGCAAGTGTTGTGACGGCGTCCGGTCACTCTTCCAAAATTTTCCCATCTGCCTTTGCCAC
GTGTTCAACGGCGGCGACCTAGACAAACTCATGTCGGCACCCCTGGATGGAGGCCAACTCTTTGGCCTCTCGTCTGC---
-TTGTAACACCAGTCCGAGTGACTTTGTACCCTGCTACGGTAAGTCGTTATTGCTCTTGTTGTG-------TACAAATTG
TTCAGTGTATTACTGTGCTCGGTTTTTAAGATATATA--TTGTGCCCATCTCCAATTATGAACCATGTGAATCTTTTTTC
ATGGATCGGAGAGCAGATGTGCCACCGATGAGGGCCGCACCTACCCCTAAAGCTGCTCCATAA-----------------
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>chr7A_1_TraesCS7A01G485200
TGCTGCTCGGTGCGAACCTTGAAATTTTTTTCACGCCGTAGTGCGAACACCAAAGAGTACCCTCAACTTTCCAAAATAGT
ACCTTATATGGAAGATTTGAATCCTTTAATATCAGAACCGTCATGCAAAATTCATAACAAAAGTATTGTATGTGTAGCAT
GGTTTTTTATGTATGACTTATATGCATTTTTGCTAGCTTTCGGCATGCGCCTCCCTGCAGCCACCAGCCACCAGATGACA
CTGTTTAGTTATTGTTGCGTTGTGCTTATTCTATGGACACGTCAAGTATCTCTCCTGTTTCAACGCACGGACATTTGTGC
TAGTTTCCCCTAAAGCACATGCCGTATATAACTAACACTCCATTTCCCTTGCGCATATATCCCTTCTCAAATACCAAGTC
TCCCCCCTTGTTACACGGGCTTATACATAGCCAGCGCGCGCACGGCGCACACGTTTTGGATACTAAGGGCATGTACAATG
GTTGATAAGATAGTCTTATCTTAAGTCTTGTATGTGATTTAGATATGACAAAAAAATTTGTCTACAATGGGTCATCTCTT
AGCCTTATTTTTAATAACTAGCAATTCCT---------------------------------------------------
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---------------------------------------------------------------AAAAATGTGGTGAGACA
TATTGTGTTAAGAGATCACCTCTTGTCTTCTCTTAAATAAGAGAAGACAAATCTTTTCTTATGAGTTCTCTCTCCTCCAC
CTCATCATCTATCCTACGTGGCACTCTTAAGATAGCACCATTGTACATGCCCTAACGAACTAACTACACTCACGCACTAA
CTAAACTGACTATCAGGCATGC--ATTGCAACCCACATGCATCGCCTAACAAATTGTCAGATGTTTCGTGAGGAGAGAAC
ACAAGATATGGATCGACCCCAACAGAAAACATCTCTATCTCCTTATCCCAACGCATCATACTTCACCTGCATCCTCCTGT
ATATAAGTTGATCAAAAACCACAAGTTCGTAGTACCACA--ATTCACACCTTGCAAGAGCCCAAACTAGTTCCATTCCAT
GGCGCCATCCGAGTCCCAGCATCTCGCCTTGTTCCTCGCCATCGTCATCACCGCCGCCACGCCGTCCCCCTCGGCGGCCG
CCGTCCCTGCCAAGGCCCCTGCTCCCTCCGCCAGCAACGATGCAGTAGCAAAACCATTGGCATGGTGTATGATTCCTTGC
CTTCCGATCCTGCCACCCATATTATGTGTACCACCGATATTCTGTCCCCCAACGCCAAGTGCGCCGCCGCCGCCATCCCC
TTTCAAGCCGCACCCCAAGGAGTGCCTACCGTCGCTGATGGGGCTGATGCCATGTAAGGATTTCCTCACCAACAGCACCG
CGCCCAAGCCTCCACGCCAAGGCAAGTGTTGTGACGGCGTCCGGTCACTCTTCCAAAATTTTCCCATCTGCCTTTGCCAC
GTGTTCAACGGCGGCGACCTAGACAAACTCATGTCGGCACCCCTGGATGGAGGCCAACTCTTTGGCCTCTCGTCTGC---
-TTGTAACACCAGTCCGAGTGACTTTGTACCCTGCTACGGTAAGTCGTTATTGCTCTTGTTGTG-------TACAAATTG
TTCAGTGTATTACTGTGCTCGGTTTTTAAGATATATA--TTGTGCCCATCTCCAATTATGAACCATGTGAATCTTTTTTC
ATGGATCGGAGAGCAGATGTGCCACCGATGAGGGCCGCACCTACCCCTAAAGCTGCTCCATAATCGGCTCAATATCAGGT
AACTGGTTTGTTTCCGGTTAAATTGAATCATATTTTTC----GTGGGTGATAGATTCATTCATGGCTGCATCCATGAACT
AGTATGCCTATTTCTGTATTGTAATGTAACTTGTGTTTATCCGCGTTTTGCAGAACCATTGCCGTAGTAGCATTAC----
---AGATGGAAGCTAAAGATGTCGTATGCCTAGATTTGTTAGTATCATTCTTAGAAGATATATAGTGCGAGTTTTTAGTT
TGATTAGGGATGATATGTAGCTTCATTTGTGTCAATCTCCGAGTCGTCTTTAGAAAATTTGTTCGTTGCGATTGTGAAC-
-TATATATG--TGTCTGTTCTTTATGAATGTCCGTGGTATGCAATCATCAAACGTGCACCCAGTTATCGAATTATTTAAT
TACTTGTACTACTCTGCATGCTCTCCTGACTATCCAACGCTCCTAATTAATCTATCTAGCACTG----ATAGACTGTGAA
AAGAAATATGATTTCTCGCAAAAAAGAAAAAAAATCATCGCCGCAAGTTGTACTCTACGATCGTTCCTTAATGCCGCAAA
GTAAGCACACATCGTGTGCATCTTCAACTCATTTGCTATTTCTCTTAAGAAATCTCCAACTT-GAAATGTTTTACTTTTT
GAGAGAGAGGACCAAAAATGTGGTCAAGTCCTGCTATCTTGTGTGGCGCGCTGGCGCGTTCCT-----------------
----CCAAGGCCAA----------CAGGTACGAGCATGTGCTTTCGAGTGCTCCCGAAAACATGGGGCGAGGGCGAGGCC
AATGGCGCGAGCCTCGCAT----GATCGCGCTCACCATGCCGCGGCCCAGCAACAGTTCCCTTGCATGAAGTTTA--GTG
CAAAGAACTGACTAAACATGAGTAGATTACAACTTTGGTCGTATAGTAGCCAGTTGGCACGTAACACAATTATTCTCGTA
CTCAAGAAATGTTCCAATATGATCGGTGCACATGAAAGGTGGGTTGTAGACAAAACCTGTGAATAGTTTGTAATCTAAAC
>chr7A_324
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---TTTCCCCTAAAGCACACGCCGTACATAACTAACACTCCATTTCCCTTGCGGATAAATCCCTTATCAAATACCAAGTC
TCCGCAG-TGTTACACGGGCTTATACATAGCCAGCGCGCGCACGGCGCACACGTTTTGGATACTAA--------------
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-------------------------------------------------------CGAACTGACTACACTCGCGCACTAA
CTAAACTGACATAATCATGCATGGATTGCAACCCACATGCATCGCCTAACAAATTGTCAGAAGATTCGTGAGGAGAGAAC
ATAAGATATGGATCGACCCTAACAGAAAACATCTCTATCTCCTTATCCCAACGCATCATACTTCACCTGCATCCTCCTGT
ATATAAGTTGATCAAAAACCACAAGTTCGTAGTACCACA--ATTCACACCTTGCAAGAGCCCAAACTAGTTCCATTCCAT
GGCGCCATCCGAGTCCCAGCATCTCGCCTTGTTCCTCGCCATCGTCATCACCGCCGCCACGCTGTTCCCCTCGGCGGCCG
CCGTCCCTGCCAAGGCCCCTGCTCCCTCCGCCAGCAACGATGCAGTAGCAAAACCATTGGCATGGTGTATGATTCCTTGC
CTTCCGATCCTGCCACCCATATTGTGTGTACCACCGATATTCTGTCCCCCAACGCCTAGCGCTCCACCACCGCCATCCCC
TTTCAAGCCGCACCCGAAGGAGTGCCTACCGTCACTGATGGGACTGATGCCATGTAAGGATTTCCTCACCAACAGCACCG
CGCCCAAGCCTCCACGCCAAGGCAAGTGCTGTGACGGCGTCCGGTCACTCTTCCAAAACTTTCCCATCTGCCTTTGCCAC
GTGTTCAACGGCGGCGACCTTGACAAACTCATGTCGGCACCCATCGATGGAGGCCAACTCTTTGGTCTCTCGTCTGC---
-CTGTAACACCAGTCCGAGTGACTTTGTACCCTGCTACGGTAAGC---TATTGCTCTTGTGTGGTAC----TATAAATTA
TTTTGTGTATTATTGTGCTCGTCTTT---------------------------AATTATGAACCATGTGAATCTTTTTTG
ATGCATTGGAGAGCAGACGTGCCGCCGGTGAGGGCCGCCCCTACCCCTAAAGCTGCTCCATAATCGGCTCAATATCAGGT
AACT-GTTTGTTTCTGGATAAATTGAATCGTATTTTTTTTTTGTGGGGGATAGATTCATTC-TGGTTGCATGCATGAACT
AGTTTACCTATTTCTGAATTATAATTTAATTTGTGTTTATCCGCGTTTTGCAGAGCCATCATCATAGTATCATTACAGAG
ACAGGATGGAAGCTAAAGATGCCAACGCCTATATCTGT------------------------TAGTACGAGTTTTTAGTT
CAATTAGGGAAGATATGTAGCTTCATTTGTGTCAATCTTAGAGTCGTCTTCAGAAAATTTGTTCGTTATGATCGTCAACT
ATATTTATATATGTGTGTTCTCTATGAATGTCCGTGGTATGCAATCATCCAACGAGCACCTAGTTATCGAATTGTTTAAT
TACTTGGACTGCTGTGCATGCTCTCCTGACTATCCAACGCTCCTAATTAATTTATCTAGCACTG----ATAGACTGCGAA
AAG--------------------------AAATATGATTGCCGCAAGTTGTACTCTACGATCGTTGCTTAATGCCGCAAA
GTAAGCACACATCGTGTGCATCTCCAACTCATCTGCTATTTCTCTTAAGAAATGTCCAACTTAGAAGCGTTTTACTTTTT
GAGAGAGAGGACCAAAAATGTGGTCAAGTCCTGCTATCTTGTGT--CGTGCTCGTGCGTACCT-----------------
----CCCGGCCGGCCTGACGCGACCACGTACGAGCATGTGGTTTCGAGTGCTCCCGGAAACGTGGGGCGAGGGCGAGGCC
AACGGCGTGCGTCTTGCAT----CATCGCGCTCACCATGCCGCGGCCCAGCAACGGTTCGCGTGCATGCCGGTCTGCGTG
CAAAAAACTGACTAAAC---------------------------------------------------------------
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>chr5B_463
TAAGG---------------------------------------------------------------------------
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--------------------------------------------------------------------GCATGTATAATG
GTTGATAAGATAGTCTTATCTTAAGTCTTGTATGTGATTTAGAGATGACAAAAAAATTTGTCTACAATGAGTCATCTCTT
AGCCTTATCTTTAATAATTAGCAATTCCTAAAAATGTGGTGAGACATATTGTGCTAAGAGATCACCTCTTGTCTTCTTTT
AAATAAGAGAAGACAAGCCTTTTCTTATGAGTTCTCTCTCCTCCACCTCATCATCTATCCTACGTGGCACTCCTAAGATA
GCATCATTGTACAGCCCTAAGGGCATGTACAATGGTTGATAAGATAGTCTTATCTTAAGTCTTGCATGTGATTTAGAAAT
GACAAAAAAATTTGTCTACAATGGGTCATATCTTAGCCTTATCTTCAATAACTAGTAATTCCTAAAAATGTGGTGAGACA
TATTGTGCTAAGAGATCACCTCTTGTCTTCTCTTAAATAAGAGAAGACAAGTCTTTTCTTATGAGTTCTCTCTCCTCCAC
CTCATCATCTATCCTACGTGGCATTGCTAAGATAAAACCATTGTACATGCCCTAA-------------------------
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>chr7D_812
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-----------------------------------------------AACAAATTATCCGCATGTTCGTG-GGAGAGTAC
ACAAGATATGGGTTGACCCTAACAG-AAACATCTCTATCTCCTTATCCCAGCGCATCATACTTCACTTGCA---TCGTAT
ATATAAGTTGATCAAAAACCACAAGTTCGTAGTACCACACCATTCACACCCGGCAAG--CCCAAACTAGTTCCATTCCAT
GGCGCCATCCAAGTCCCAGCGTCTGGCCTTGTTCCTCACCATCGTCCTGACCGCTGCCACGCGGCGGCCCTCGGAGGCCG
CCGTCCCTGCCAAGGCCCCTGCTCCCTCAGCCAACAGCGATGCGGTAGCAAAACCATTGGCATGGTGTATGATTCCTTGC
CTTCCGATCCTGCCATCCATATTGTGTGTACCACCGATATTCTGTCCGCCAACGCCTAGTGCACCGCCGCCGCCATCCCC
TTTCAAGCCGCACCCCAAGGAGTGTCTACCATCTCTGATGGGGCTGATGCCATGCAAGGGTTTCCTCACCAACAGCACCG
CGCTCAAGCCTCCACGCCAAGGCAAGTGTTGTGACAGCGTCCGGTCACTCTTCCAGAACTTTCCCATCTGCCTTTGCCAC
GTGTTCAACGACGGCGACCTAGACAAACTCATGTCGGCTCCCATGGATGGAGGCCAATTCTTTGGTCTCTCGTCTGC---
-CTGTAACACCAGTCCAAGTGACTTTGTACCCTGCTACGGTAAGTCGTTATTGCTCTTGTGTGGTACGTACTATAAATTG
TTCTATGTATTATTGTGCTTGTTTTTTTAGA--TATA--TTGTGCTCATCTCCAATTTTGAACGATGTGAATCTTCTTTC
ATGGATCGGAGAGCAGACGTGCCACCCATGAGGGCCGCACCTACCCCTAAAGCTGCTCCATAATCGGCTCAATATCAGGT
AACAGGTTTGTTTTCGGATAAATTGAATCATATTTTTT----GTGGGTGATAGATTCATTAATGGCTGCCTGCATGAACT
AGTATGCCTATTTCTGTATTGTAATTTAACTTGTGTTTATCCGCGTTTTGCAGAGCCATTGTAGTAGTAGCATTACAAAG
ACAAGATGGAAGCTAAAGATGCCCTAAGCCTAGATTTGTTAGTATCATTCTTAGAAGATATA--GTGTGAGTTTTTAGTT
CGATTAGGGAGGATATGCCGCTGCATTTGTGTCAATCTCTGAGTCGTCTTTAGAAATTTTGTTCGTTATGATTGTCAACT
ATATATG----TGTGTGTTCTTTATGAATGTCTGTGGTATGCAATCATCAAACGAGCACCTAGTTATCGAATTGTTTAAT
TACTCGGACTACTTTACATGCTCTCCTGACTATCCAACGCCCCTAATTAAT---------ACTG----ATAGACTGCGAA
AATAATTACCATTTCTCGCA------AAAAAAAATCATTGCCGCAAGTTGAACTCTATGATCGTTGCTTAATGTCGCAAA
GTAAGCACACATCGTGTGCATCTCCAACTCATTTTCTATTTCTCTTAAGAAATCTCCAACTTAGAAATGTTTTACTTTTT
GAGAGAGATGACCAAACATGTGGTCAAGTCCTGCTATCTTGTGTGTCGCGCTGGCGCGTTCCTCCCGGCCGGCCTCACCC
AACCCCAAGGCCAA----------CAGGTACGAGCATGTGCTTTCGAGTCCTCCCGAAAACATGGGGCAAGGGTGAGGCC
AATGGCGCGTGCCTCGCAT----GATCGCGCTCACCATGCCGCGGACCAGCAACGGTTCCCTCGCATGAAGTTTA--GTG
CAAAGAATTGACTAAACGGGAGTAGATTACAACTTTGGTCATATAGTAGCCAGTTGGCGCGTAACACAATTATTCTCGGA
CTCGAGAAATGTTCCAATATGATCCGTGCACATGAAAGGTGGGTTGTAGACAAAACCTGTGAATTGTTTGTAATCCAAAC
>chr7B_917
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------------------------------------------------------------------------CCTCCTAT
ATATAAGTTGATACCCAACCGAATGTTCGCAGT---ACC--ATTCACATCTGGCAAG--CATAAACTAG-----TTCCAT
GACGCCATTCAAGTCCCAGCATCTCGCCTTGTTCCTCGCCATCGTCCTGACCGCCGCCACGCTGCGGCCCTCGTCGGCCT
CCGTCCTTGCCAAGGCCCCTGCTCCCTGCGCCAATAGCGATGCGGTAGCAAAACCATTGGCATGGTGTATGATTCCTTGC
CTTCCGATCCTACCCCCCATATTGTGTTTACCACCGATATTCTGTCCGCCAACGCCTACCGCGCCACCGTCGCCGTCCCC
TTTCAAGCCACACCCCAAGGAGTGCCTACCATCGCTGATGGGGCTGATGCCATGCAAGGATTTCCTCACTAACAACAGCG
CGCCCAAGCCTCCACGCCAAGGCAAGTGTTGTGACGGCGCCCTGTCACTCTTCCAAAACTTTCCCATCTGCCTTTGCCAC
GTGTTCAATGATGGCGACCTCGACAAACTCATGTCGGCACCTACGGATGGAGGCCAATTCTTTGGTCTCTCATCTGCCTG
CCTGTAACACCAGTCCGAGTGACTTTGTACCCTGCTACGGTTA---GTTATTGCTCTTGTTGTG-------TACAAATTG
TTCAGTGTATTATTGTGCTCGGTTTTTAAGA--TATATGTTGTGCCCATCTCCAATTATGAACCATGTGAATCTTTTTTC
ATGGATCGGAGAGCAGATGTGCCACCGATGAGGGCCGCACCTACCCCTAAAGCTGCTCCATAATCGGCTCAATATC-GGT
AACTGGTTTGTTTCTGGATAAACTGAATCATATTTTTT----GTGGGTGCTAGATCCATTTCA---TGGCTGCATGAACA
AGC--ACGTATTTATGTATTGTAATTTAACTTGTGTTTATGTCCGTTTTGCAGAGCCATCGCCGTAGTACCATTACAGAG
ACAAGATGGAAGTTAAAGATGCCGTACGTCGAGATTTGTTAGTATCATTCTTATAAGATATA--GGTGCGATTTTTTTTT
CGATTAGGAAGGACATGTAGCTTCATTTTTGTCAATCTCTGGGTGGTCTTTAGCAAATTTGGTCGTTATGATTGTCAACT
ATATTTG----TG-------------------------------------------------------------------
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>chr7B_2015
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----------------------------------------------------------------------------AAC-
-TATATT----TGTGTGTTCTTTATGAATGTCCGTCATATGCAATCATCAAACGAGCACCTCGTTATCAAATTGTTTATT
TACTTGGACTACTCTGCATGCTCTCCTGACTATCCAACGCTCCTAATTAATCTATCTAGCACAGATATATAGACTGCGAA
AAG--------------------------AAATATCATGGCCGCAAGTTGTACTCTACGATCGTTG--------------
------------------CATCTCCAATCCATTTGCTATTTCTCTTAAGAAATCTCCAGCTTAGAAGTGCTTTACTTTTT
GAT--AGAGGACTAAAAATGTGGTCAAGTCCTGCTATCTTGT-----------------TCCTCCCGGCCGGCCCGGCCC
GACCCCAAGGCCAC----------CAGGTACGAGCATGTGCTTTCGAGTGCTCCCGGGAACATGGGGTGAGGGCGAGGCC
AACGGCGTGCATCTCGCATGATCGATCGCGCTCACCATGC-----------------TCGCGTGCATGCGGGTCAGCGCG
CAAATAAATTACAAAATGGGAGTAGATTACAACTTTGGTCGTATAGTAGCCAGTTGGCGCTTAACACAATCATTCTCGGA
CTCGAGAAATGTTCCAATATGATCCGTGCACATGAAAACTGGGTTGTAG-------------------------------
>SNPs
-SSS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSS----------------S------S--------------------------S---S-------S--------------
---S-SSS----------------------------------------------------------SS-------S----
-------------------------------------------S-------------------------S----------
--------S--------S--------------------------------------------------------------
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-------S------------------------------------------S-----------------------------
-----------------------S-SS-------SS-------------------------S---------S--------
----------SSSSSSSSSSSS---------------------------------------S-S----------------
-------------------S------------------------------------------------------------
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--------------------------------------------------------------S--S--------------
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-----------------------S--------------------------------S-----------------------
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----------------------------------------------------------S---------------------
------------------------------------------S----------------------S--------------
-S------------------------------------------------------------------------------
------------S------------------SS-----------------------------------------------
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-----------------S-------------------S---------------------------------S--------
-------------------------S----------------------------S-------------------------
---------------------S----S-----------------------------------------------------
S---------S----------------------------S---------------------------SS------S----
--------S-----S---------------------------------------S-----S------------S------
------S---------------------------------------------------------------------S---
-----S--SS----------SSSSSS------------S--------------------------S--------------
-----------------------S--------------------------------------------------------
---------------------------------------------S----------------------------------
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---------S--------------------------------------------S-------------------------
-----------------SS---------------------------------------S-------------------S-
---S--------------------S---------------------------------------S----------S----
>forward_244
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----------------------------------------------------------------CAGCCACCAGATGACA
CTGT----------------------------------------------------------------------------
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>reverse_1723
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------------------------------------------CTGGATGGAGGCCAACTCTT------------------
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>forward_319
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-----------------------------------------------------------TCAACGCACGGACATTTGTG-
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>reverse_2519
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--------------------------------------CGCCGCAAGTTGTACTCTAC----------------------
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