>input_sequence_71604
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-ATGGCCCGAAGCCGGAGCGGCGGCCTCTCGTTATCGTCCGCGCTGAGCCTGGGGCTCGCCGTGCTGGCCGTCACATGGG
CGGCGTCCACGGC---------GCAGCAGCAGC------------CGCCGGCCGTGCCCAGCCCGGGCGTGAGCGTGCCG
AGCTGCCCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTGAGCTACTTCATCGGCAACTCCTCGTCGCCGTCCGACGCGTG
CTGCGTCCAGATGCGGGCCCTGTTCCAGTCGCAGGCGCCGTGCCTCTGCGCCGCCGTGTCCGCCGTGCCGTCCCAGCTCG
GGTCCGTGGTCGGTGGCCTGCTCCCCACCGCCTGCGACCTGCCCCCCAACGCCTGCTCCGGTACGCGCATGCTGCCATGC
CAGCGACATACTGAAG-------------TGGAGTGAGAGTGACTAACCACTTCTGTTGCTGTGTGTGTGTGTGTGCAGC
TGTGACAGGGACCACCAGCTCTGCTCCGGCGC------------CGTCGTCGTCGACGGGAACACCTACTGATGCTGCGG
CTGCTGCGCCGGTGACCGGTCCGGCTGATGCGGACCCGGCTGGCACGCCTTCCGGTGGTGGGGTGAAGTCGGTTCCGGGG
ACGGTTGATTCGGCGGCTGCCGTTG---AGTGCAAGGGGACCTCCGCTGCCGTCGTCG---TCCTGGCCATGGCTGCCTC
GTTCCTAG---CTGCTTATGTTCTCTGA----------------------------------------------------
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---------------------------------------------------
>chr4B_1_TraesCS4B01G018000
AATTAAAGAAGATGGCAGGGTGTTTCTTGCAAAAATGCGGGCGAAGACCGGTCCAGCCACCTGGCTGCCACTTGTCGAGC
TGTGATAGGCCGGAGACTAAATCATCACATCCAGTGCAAGTTGGGGTATGGTGGAGTTGCATTTTGCAAGTTTGGTACTA
AATCATCACATTTCATACAAGTTAGGGTACTTGGGGTGCTTTTACCTCTCTTTTTTAATGCTCTGCTAGGTTGCTCCAT-
--GAGATACAAAGGCTGAGGCGAATGACGAAAGCTCAAAAAGTAAAAGGTGG----------------------------
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-----------AAGATTCAGATTGAAA-GGTGCACATTTTTGAATTGAAGCTCAAAGAATAGAATTCGACCATGAGCCTA
GGACTGAGGCATACACGCCGACGTGCCAAC--AAAAAGAGCCATGCATGTCCATGAGTTTTGGAT--GAAATAACAACAC
GCTTTTTTCCTCCCAAATCTTGTAGCACGACCTTGAGTCACACAGCAGTGAACGGAGAGGTCCAAATTATTTTGCGACGA
TGTAATCCCTTCTTCATTAGTACAGTACCGATTAATTTTATCTTTTACTAGTCGTTCTTCATCCAGTTGTCTGTGCATTG
TATTGGTTTTGTGTTTGCTTGATATTAATCAGATTTAAGTTGCACTTTGGGTGTTTTTAATTTTTTTTTAAAGCA-----
TTATTATTATCTCCTTTCAAAAAAGGAGAGAGAGACTCTGATGCACGATCCGTC--TCAGCTAGC-AGTGTCGAGTTCAT
CCGAGTTTTCCCACCAACACGGTGACATCTCTGG-AAAAGCAGTG------------GCAAAGTGCAAGCTAC-------
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----------------------------------------TCCACTTTTGGACGTTAGATTAGATAGGGCAGTCGATCTG
CCCGTCGCTACCGGGCCACCGGTCGTTCGTCCAACAAAGCATCCGAGCACCTATAAAT-GAACCACGAGCC-ACGGCACG
ACGGCACGTCCACCGGCCGATCGCACAGTGCACCAGAAAGCCCGG-CCAGTTCACTCCGATCATCCATCCAC---CCGCC
GATGGCCCGAAGCCGGAGCGGCGGCCTCTCGTTATCGTCCGCGCTGAGCCTGGGGCTCGCCGTGCTGGCCGTCACATGGG
CGGCGTCCACGGC---------GCAGCAGCAGC------------CGCCGGCCGTGCCCAGCCCGGGCGTGAGCGTGCCG
AGCTGCCCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTGAGCTACTTCATCGGCAACTCCTCGTCGCCGTCCGACGCGTG
CTGCGTCCAGATGCGGGCCCTGTTCCAGTCGCAGGCGCCGTGCCTCTGCGCCGCCGTGTCCGCCGTGCCGTCCCAGCTCG
GGTCCGTGGTCGGTGGCCTGCTCCCCACCGCCTGCGACCTGCCCCCCAACGCCTGCTCCGGTACGCGCATGCTGCCATGC
CAGCGACATACTGAAG-------------TGGAGTGAGAGTGACTAACCACTTCTGTTGCTGTGTGTGTGTGTGTGCAGC
TGTGACAGGGACCACCAGCTCTGCTCCGGCGC------------CGTCGTCGTCGACGGGAACACCTACTGATGCTGCGG
CTGCTGCGCCGGTGACCGGTCCGGCTGATGCGGACCCGGCTGGCACGCCTTCCGGTGGTGGGGTGAAGTCGGTTCCGGGG
ACGGTTGATTCGGCGGCTGCCGTTG---AGTGCAAGGGGACCTCCGCTGCCGTCGTCG---TCCTGGCCATGGCTGCCTC
GTTCCTAG---CTGCTTATGTTCTCTGATATCGTCATGTGATTCCTGCCGGGGCATGTTGTGAGTTCGTGACTCGACTAG
ATGGATGTGCCGCCTGTTACCAGTGA--------TGAGTCTGTCACTGATTTGCTCCACTGCACATCAGAGGTGTGACTT
GTTTTTATCGGTTA----TTATTATCCCCAGTGCACACCAGAGTTGTCACTTGGTGGTGCGATGTATATATAGTGCTAGC
TTTTGTAACGAGGAATTAATTCCACTTGGTGGCTTCCTCCAACGTCTCACGGAGCTGGGTATGGTTTA------------
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------------------TTTATAGAAGACAATATAAGCATTAACAATAAGAAATATGCATTTTATGACAATATATTAAA
TAATGAATGGAATATTATTATTTGGCATTGTAGATGTTAACACAAAAAATA-TAAATTTGGTCATAGTTTACAATCTTTT
TTGTGTGTGTGTGCGGAAATAGTTTACAATCTTTGACTTAAGACAAAGCTAATATGTGGATAAAAAGGGAGAAAGTATA-
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-------------------ATATAAAAACAGATGGAAAGACACCTTTGGCAAAGGTAGAACCTCCATGGAACAGGAGGGT
TCTCCAAAATTTAAAGTGAACCAAATTCCACCGAACCTGAATCTGAACTAGGTTTAAACAGATTTTTGGGGCAAAATTAG
ATGAGTTTCTGCCCAATTCAAATTTCAGAGGAGCCCAAACCCTTTGCGAAATAAAAACCAGGAGTTGTAGTAAAACGTAT
GATGTCGTGCATGTTGAACCCAGAGGCCATGACATATATGGCTCTTGTGCCAATCCGCGGAGTACATTCGCCGGGAAAAT
GCCGACAATGGTCACCACTCACCACCAACTATACCTGGCCACGGGATACCCGGGCCGGCCAGTCCGACCCGACCCGGTCT
TGCCCGTGGGTTGGGCCTGGGCCTAAAATTTGAGCCCGAAGGTTGGGCCGGGCTTGGGCTTGACTTTTTTGCGTTTTAGG
AAAGAGACCTGAGGCTAGATGGGCTGAGCATGGGCCTGAAATCTAGGCCGG
>chr4D_211
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--------------------------------------------------TTTTTTAATGCTCTGTTAGCTCCACGAATT
TCGATATACAGAGGCTGAGGCGATGT-CGAAAGCTCAAAAAGTAAAAGGTGG----------------------------
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-----------AAGATTCAGATTGAAA-GGTGCACATTTTTGAATTGAAGCTCAAAGAATAGAATTCGACCATGAGTCAA
GGACCGAGGCATACACGCTGACGTGCC--AAAAAAAAGAGCCATGCATGTCCATGAGTTTTGGAT--GAAAAACCAACAC
ACTTTTTTCTTCCC-AATCTTGTAGCACGACCTTGAGTCACACAACAATGAACGGAGAGGTCCAAATTATTTTGCGACAA
TGTAATCCCTACTTCATTAGTACAGTACCAATTAATTTTATCTTTTACTAGTCGTTCTTCGTCCAGTTGTCTGTGCATTG
TATTGGTTTTGTGTTTGCTTGATATTAATCAGATTTAAGTTGCACTTTGGGTGTTTTT--------TTTAAATCA-----
TTATTATTATCTCCTTTCAAAAAAGGAGAGAGAGACTCTGATGCACGATCCGTC--CCAGCTAAC-AGTGTCGAGTTCAT
CCGAGTTTTCCCACCAACACGGTAACATCTCTGGGAAAAGCAGTGGCAGTGCACCCTGCAAAGTGCAAGCTAC-------
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----------------------------------------TCCACTTTTGGACGTTAGAT-----AGGGCAGTCGATCTG
CCCGTCGCTACCGAGCCACCGGTCGCTCGTCCAACAAAGCATCCGAGCACCTATAAATTGAACCACGAGCCCACGGCACG
ACGGCACGTCCACCGGCCGACCGCACAGTGCATCACAAAGCCCGG-CCAGTTCACCCCGATCATC-ATCCAC---CCACC
AATGGCTCGACGCCGGAGCGGCGGCATCTCGTTCTCGCCCGCGCTGAGCCTGGGGCTCGCCGTGCTGGCCGTCACATGGG
CGGCGTCCACGGCACAGCAGCAGCAGCAGCAGC------------CGCCGGCCGTGCCGAC------CGTGAGCGTGCCG
AGCTGCCCGCCGGTGCAGGCCTCGCTGTCACCGTGCGTGAGCTACTTCATCGGCAACTCCTCGTCGCCGTCCGACGCGTG
CTGCGTCCAGATGCGGGCCCTGTTCCAGTCGCAGGCGCCCTGCCTCTGCGCCGCCGTGTCCGCCGTGCCCGCCCAGCTCG
GGTCCGTGGTCGGCGGCCTGCTCCCCACCGCGTGCAACCTGCCCCCCAACGCCTGCTCTGGTACGTCCATGACATGATA-
---------TACATGTAGAAAAACTGAGATGGAGCGAAAGTGACTAACCACTTCTGTTGGTGTGTGCGTGTGTGTGCAGC
CGTGACAGGGACCTCGGGCTCTGCTCCGGCCGGTGGCGCAGCGGCGCCGTCGTCGTCGGGGACGCCTACTGATGCTGCTG
CGGCTGCGCCGGCGACCGGTCCCGCTGATGCGAACCCGGCTGGCACGCCTTCCGGTGGTGGGGTGAAGTCGGTTCCGGGG
ACGGTTGATTCGGCCGCC------G---AGTGCAAGGGGACCTCTGCTGCCGTCGCGGTCCTCCTGGCCATGGCTGCCTC
GTTCCTAG---CTGCTTCTGTTTTCTGATCTCGTTATGTGATCCGGGGCTTGT----TTGTGAGTTTGTGACTCGATTAG
ATGGATGTGCCGCCTGTTATTTACGGAGTATCAGTGAGTCTGTCATTGATTTGCTCCACTGCACATCAGCATTGTGACTT
CTCTTTAATGGATC------ATTACCCCCAATTCACATCAGACTTGTCACTTGGTGGTGCGAC--ATATGTAGTGCTAGC
TTTTGCAACGAGGAATTAATCTCACTTGGTGCTTTCCTCCAACGTCTCACGGAGCTGGGAATGGGGCTCCTGAATCGTTG
TCATGTGCCCTAACAGTGTATGGGTTCATCAGACAAAGCAAATCGGCCCGACAAGCCACAAAACAGCATTGCGTGATGCA
CCTGAATTCGTGATAGACTTGAACATGTTCTTTGCTCTAAATTCCATCAAAATTCGTCATGGATTTGAGTAGCTTCTTTA
TTGCGCCGGTATCTTCTTCTGCAAAGTACTCCCTCTGTTTTTCTTTTATTCTGCATATTAGTTTAGTCCTGAGTTGAACT
TTATAAAGTTTAATCAAGTTTATAGAAAACAATATAAACATTTACAATAAGAAATATACATTGTATGAAAATATATTCAA
CGATGAATCAAATATTATTATTTGGCATTGTAGGTGTTAACAAAAAAAATTGTAATTTTGGTCATAGTTTACAATCTTTG
------------------------------------CTTAAGACAAAGCTAAAATGTGGATAAAAAGGGAGATAGTATGA
TATAAAAAAGGGCGTGGCTAGATCTCAGTCGACTGAGACTTAACCAAGTTTCAGTCAAGTGACAGAACATATAAACAGAA
AAAGACAAAATTTTGCACAGATCTCCATATAAGATATCATGAATATAGCATCGACCGAGACTTTGTTAAGTCTCAGTCGA
CTGAGATTTAGTAATCCCGATATAAAAACAGATGGAAAGACACCTTTGGCAATGGTAGAACCTCCAGGGAATAGGAGGGT
TCAACAAAA-TTAAAGTGAAACAAATTGGTG-GAACCTGAATCTGAACTAGGTTTAAACAGATTTTTGGGGCAAAATTAG
ATGAGTTTCTGTCCAATTCAAATTTCAGAGGAGGCCAAACCCTGGCCAAATTAAAAC-----------------------
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---------------------------------------------------
>chr4A_285
ATGCAGCCATCCGTCCCAGCTAAGTAGTGTCGAGTTCATCCGAGTTTTCTCACCAGCACAGTAACATATGTGGAAAAGCA
CTCTACAAAGTGCAAGCTACTTTTGGACGTTAGATAGAGCAGTCGATCTGCCCGTCGCTACCGAGCCACCGGTCGCTCGT
CCAACAAAGCATCCGAGCACCTATAAATTGAACCACGAGCCCACGGCACGACGGCACGACCACCCATCGCTCGCACAGTG
CATCACGAACTTAACCCCGGTTCACTCCGATCATCATCCACCCACCGATGGCCCGACGCCGGAGCAGCGGCGGCATCTCG
TCCGCGCTGAGCCTGGGGCTCGCCGTGATGGCCGTCACATGGGCGACGTCCACGGCGCAGCAGCAGCAGCAGCAACCGCC
GGCCGTGCCAAGCGTGAGCGTGCCGAGCTGCCCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTGAGCTACTTCATCGGCA
ACTCCTCGTCGCCGTCCGACACGTGCTGCGTCCAGATGCGGGCCATGTTCCAGTCGCAGGCGCCCTGCCTCTGCGCCGCC
GTGTCCGCCGTGCCGTCCCAGCTCGGGTCCGTGGTCGGCGGCCTGCTCCCCACCGCCTGCAACCTGCCCCCCAACGCCTG
CTCCGGTACGTGCATGCTGCCAGCGAGATGCTCCTACATGTAGAAAAACTGGAAAGTTCTGACCATTTCTGTTGGTGTGT
CATCGTCGCCACCTGGACTCACTCCACCGCAGCTCCGACTTCAAAGCAACCAAGCAACCTACAGAAGAGCACCTCGGACA
CGCCTGAAAGAACCGACTATCGAAGTCCATGCCGCGACCCAAGCTCCTCTCGACGCCATCATCGTTGCCAAAAACAAAAA
CCAGCGCCCCAGCTCGGTGATACGTCTCCAACGTATCTATAATTTTTGATTGTTCCATGCTATTATATTATCTGTTTTGG
ATGTTTATGGGCTTTATTATACACTTTTATATTATTTTTGGGACTAACCTATTAACCGGAGGCCCAACCCAAATTGTTGT
TTTCTTGCCTATTTCAGTGTTTCGAAGAAAAAGAATATCAAACGGAGTCCAAACAGAATGAAACCTTCGGGAGAGTTATT
TTTGGAACGGAAGCAATTCAGGAAACTTGGAGTATACGTCACGGAAGCTTCGAGGTGGCCACGAGGCAGGGAGGCGCGCC
TACCCCCTGGGCGCGCCCCCACCCTCGTGGGCCTCTCGTGGCTCCCCTAACCGAGTTCTTTCGCCTATATATGTCCATAT
ACCCTAAAAACATCGAAGAGCACAATAGATCAGGAGTTCCACCGCCAGAAGCCTCCATAGCCACCGAAAACCAATCTAGA
CCCGTTCCGGCACCCTGCCGGAGGGGAGAATCCCTCTCTGGTGGCCATCTTCATCATCCCGACGCTCTCCTTGACGAGGA
GGGAGTAGTTCACCCTCGGGGCTGAGGGTATGTACCAATAGCTATGTGTTTGATCTCTCTCTCTCTCTCGTGTTATTGAG
ATGGTACGATCTTGATGTATCGCGAGCTTTGCTATTATAGTTGGACCTTATGATGTTTCTCCCCCTCTACTCTCTTGTAA
TGGATTGAGTTTTCCCTTTGAAGTTATCTTATCGGATTGAGTCTTTAAGGATTTGAGAACACTTGACGCATGTCTTGCAT
GTGCTTATCTGTGGTGACAATGGGATATCACGTGATCCACTTGATGTATGTTTTGGTGATCAACTTGCGAGTTCCGTGAA
CTTATGCATAGGGGTTGGCACACGTTTTCGTCTTGACTCTCTGGTAGAAACTTTGGGGCACTCTTTGAAGTTCTTTGTGT
TGGTTGAATAGATGAATCTGAGTTTGTGTGATGCATATCGTATAATCATACTCACGGATACTTGAGGTGACATTGGAGTA
TCTAGGTGACATTAGGGTTTTGGTTGATTTATGTCTTAAGGTGTTATTCTAGTACGAACTCTATGATAGATTGAACGGAA
AGAATAGCTTTATGTTATTTTACTACGGACTCTTGAATAGATCGATCAGAAATGATAACTTTGAGATGGTTTCATACCCT
ACAATAATCTCTTCGTTTGTTCTTCGCTATTAGTGATTTTGGAGTGACTCTTTGTTGCATGTTGAGGGATAGTTATATGA
TCAAATTATGTTATTATTGTTAAGATGACTTGCACTAGTGAAAGTATGAACCCTAGGCCTTATTTCCACGCATTGCAATA
CCGTTTGTGCTCACTTTTATCATTAGTCACCTTGTCGTTTTTATATTTTCAGATTACAAAAACCTATATCTACCATCTAT
ATTGCACTTGTATCATCATCTCTTCGTTGAACTAGTACACCTATACAATTTACCATTGTATTGGGTGTGTTGGGGACACA
AGAGACTCTTTGTTATTTGGTTACATGGTTGCTTGAGAGAGACCATCTTCATCCTACGCCTCCCACGGATTGATAAATCT
TAGGTCATCCACTTGAGGGAAATTTGCTACTGTCTTACAAACCTCTGCACTTGGAGCCCAACAACATCTACAAAAAGAAG
GTTGTGTAGTAGACATCACTCAGCAAACCATGCGGTCAAGATGCCGCCATCCAGCGGTCTCCTGGCCGTAGCCGGCTCCG
AGACGATGCTCCCAAGGAGGAAAAAGACACGAAAACGTCTCCATCACCCGATCCAACAGATCTGAGGTTTCCCTCCGGAG
CCAATGCCGTGGGGAGGAGGAGCACACCTCCACGACAACGCTTCCAAGAAAGGTCGCGGCACCCACGGGTGCCGCCGTCG
CCTGCTCCGATGAAGAGCGAACGAGGATTTCTCCTGGACATGTGTCGACCACCTGCCCCCACCGACCGCCGCCAACCAAC
CACCATACCAGTTGAGGCCAACCTTACTCTGGACGCGAGATCCCACGATCCACTGCGCCTAGGAACGCACCACCCCTTGG
GCGTAGCAACCGCCCACCACAGCAACCAACGCGCCGCAAGCAGCAGCCCCCGAATCAGAGAACCACCAATGGCCAAACCC
AAAATGGAGTCACTCCAACGAAGCAGCAGAGCAGATGAGCATGCCCTTCACCGCAGCACACCTCGAGCTCCGGTGACGCA
TGCCCGCCGCGCCCCACCAGTCACCGCGCCCGTCGCGCGCAAGCTGCCGCCGCGCTAGTCCATCGATATGTCCACCACAC
GCACATCCAAGGCCGAGAGCCGCCTCGCGCATGGGCTCCGGTGGAAGATTCAGATTGAAAAGGTGCACATTTTCCAATTG
AAGCTCCAAGAATAGAATTCGACCATGAGTCCAGGACCGAGGCATACATGCTGACGTGCCAAAAAAAAAAGAGCCATGCA
TGTCCAAGATTTTTGGACGAGAAAAACCAACACACTTTTTTCTTCCCAATCTTGTAGCACGACCTTGAGTCACACAGCAA
TGAACGGAGAGGTCCAAATTATTTTGTGACAATGTAATCCCTACTTCTTTATATTTTCTATTCTGCATCCAGTTGTCTGC
CTCTTGTGATATTAATTAATTAGATTTGAAATGCACTTTGGGTGTTTTTACTTTTATAAAAAAAATCGTTGTTATTATGA
TTTCCTTTCAAAAAAGGGGAGAAAAACCCCCCGGACTCTGCATCGGTCCAGCTAACTAGTGTCGAGTTCATCCGAGTTTT
CTCACCAACACGGTAACATCTCTGGAAAAGCAGTGGCGGTGCACCCTGCAAAGTGCAAGCTACTCCACTTTTGGACGTTA
GATAGGGCAGTCGATCTGCCCGTCGCTACCGAGCCACCGGTCGCTCGTCCAACAAAGCATCCGAGCACCTATAAATTGAA
CCACGAGCCCACGACACAACGGCACGACCACCCATCGCTCGCACAGTGCATCACGAACTTAACCCCGGTTCACTCCGATC
ATCATCCACCCACCGATGGCCCGACGCCGGAGCAGCGGCGGCATCTCGTCCGCGCTGAGCCTGGGGCTCGCCGTGATGGC
CGTCACATGGGCGACGTCCACGGCGCAGCAGCAGCAGCAGCAACCGCCGGCCGTGCCAAGCGTGAGCGTGCCGAGCTGCC
CGCCAGTGCAGGCCTCGTTGTCGCCGTGCGTGAGCTACTTCATCGGCAACTCCTCGTCGCCGTCCGACACGTGCTGCGTC
CAGATGCGGGCCCTGTTCCAGTCGCAGGCGCCCTGCCTCTGCGCCGCCGTGTCCGCCATGCCGTCCCAGCTTGGGTCCGT
GGTCGGCGGCCTGCTCCCCACCGCCTGCAACCTGCCCCCCAACGCCTGCTCCGGTACGTGCATGCTGCCAGCGAGATGCT
CCTACATGTAGAAAAACTGGAAAGTTCTGACCATTTCTGTTGGTGTGTCATCGTCGCCACCTGGACTCACTCCACCGCAG
CTCCGACTTCAAAGCAACCAAGCAACCTACAGAAGAGCACCTTGGACACGCCCGAAAGAACCGACTATCGAAGTCCATGC
CGCGACCCAAGCTCCTCTCGATGCCATCATCGTTGCCAAAAACAAAAACCAGCGCCCCAGCTCGGTGATACGTCTCCAAC
GTATCTATAATTTTTGATTGTTCCATGCTACTATATTATCTGTTTTGGATGTTTATGGGCTTTATTATACACTTTTATAT
TATTTTTGGGACTAACCTATTAACCGGAGGCCCAACCCAAATTGTTGTTTTCTTGCCTATTTCAGTGTTTCGAAGAAAAA
GAATATCAAACGGAGTCCAAACAGAATGAAACCTTCAGGAGAGTTATTTTTGGAACGGAAGCAATCCAGGAAACTTGGAG
TATACGTCAGGGAAGCTTCGAGGTGGCCACGAGGCAGGGAGGCGCGCCTACCCCCTGGGCGCGCCCCCACCCTCGTGGGC
CTCTCATGGCTCCCCTAACCGAGTTCTTTCGCCTATATATGTCCATATACCCTAAAAACATCGAAGAGCACAATAGATCA
GGAGTTCCACCGCCAGAAGCCTCCATAGCCACCGAAAACCAATCTAGACCCGTTCCGGCACCCTGCCGGAGGGGAGAATC
CCTCTCTGGTGGCCATCTTCATCATCCCGACGCTCTCCTTGACGAGGAGGGAGTAGTTCACCCTCGGGGCTGAGGGTATG
TACCAATAGCTATGTGTTTGATCTCTCTCTCTCTCGTGTTATTGAGATGGTACGATCTTGATGTATCGCGAGCTTTGCTA
TTATAGTTGGACCTTATGATGTTTCTCCCCCTCTACTCTCTTGTAATGGATTGAGTTTTCCCTTTGAAGTTATCTTATAG
GATTGAGTCTTTAAGGATTTGAGAACACTTGACGCATGTCTTGCATGTGCTTATCTGTGGTGACAATGGGATATCACGTG
ATCCACTTGATGTATGTTTTGGTGATCAACTTGCGAGTTCCGTGAACTTATGCATAGGGGTTGGCACACGTTTTCGTCTT
GACTCTCTGGTAGAAACTTTGGGGCACTCTTTGAAGTTCTTTGTGTTGGTTGAATAGATGGATCTGAGTTTGTGTGATGC
ATATCGTATAATCATACTCACGGATACTTGAGGTGACATTGGAGTATCTAGGTGACATTAGGGTTTTGGTTGATTTATGT
CTTAAGGTGTTATTCTAGTACAAACTCTATGATAGATTGAACGGAAAGAATAGCTTTATGTTATTTTACTACGGACTCTT
GAATAGATCGATCAGAAATGATAACTTTGAGATGGTTTCATACCCTACAATAATCTCTTCGTTTGTTCTTCGCTATTAGT
GATTTTGGAGTGACTCTTTGTTGCATGTTGAGGGATAGTTATATGATCAAATTATGTTATTATTGTTAAGATGACTTGCA
CTAGTGAAAGTATGAACCCTAGGCCTTATTTCCACGCATTGCAATACCGTTTGTGCTCACTTTTATCATTAGTCACCTTG
TCGTTTTTATATTTTCAGATTACAAAAACCTATATCTACCATCTATATTGCACTTGTATCATCATCTCTTCGTTGAACTA
GTACACCTATACAATTTACCATTGTATTGGGTGTGTTGGGGACACAAGAGACTCTTTGTTATTTGGTTACATGGTTGCTT
GAGAGAGACCATCTTCATCCTACGCCTCCCACGGATTGATAAATCTTAGGTCATCCACTTGAGGGAAATTTGCTACTGTC
TTACAAACCTCTGCACTTGGAGGCCCAACAACATCTACAAAAAGAAGGTTGTGTAGTAGACATCACTCAGCAAACCATGC
GGTCAAGATGCCGCCATCCAGCGGTCTCCTGGCCGTAGCCGGCTCCGAGACGATGCTCCCAAGGAGGAAAAAGACACGAA
AACGTCTCCATCACCCGATCCAACAGATCTGAGGTTTCCCTCCGGAGCCAATGCCGTGGGGAGGAGGAGCACACCTCCAC
GACAACGCTTCCAAGAAAGGTCGCGGCACCCAGGGGTGCCGCCATCGCCTGCTCCGATGAAGAGCGAACGAGGATTTCTC
CTGGACATGTGTCGACCACCTGCCCCCACCGACCGCCGCCAACCAACCACCATACCAGTTGAGTCCAACCTTACTCTGGA
CGCGAGATCCCACGATCCACTGCGCCTAGGAACGCACCACCCCTTGGGCGTAGCAACCGCCCACCACAGCAACCAACGCG
CCGCAAGCAGCAGCCCCCGGATCAGAGAACCACCAATGGCCAAACCCAAAATGGAGTCACTCCAACGAAGCAGCAGAGCA
GATGAGCATGCCCTTCACCGCAGCACACCTCGAGCTCCGGTGACGCATGCCCGCCGCGCCCCACCAGTCACCGCGCCCGT
CGCGCGCAAGCTGCCGCCGCGCTAGTCCATCGATATGTGCACCACACGCACATCCAAGGCCGAGAGCCGCCTCGCGCATG
GGCTCCGGTGGAAGATTCAGATTGAAAAGGTGCACATTTTCCAATTGAAGCTCCAAGAATAGAATTCGACCATGAGTCCA
GGACCGAGGCATACACGCTGACGTGCCAAAAAAAAAAGAGCCATGCATGTCCAAGATTTTTGGACGAGAAAAACCAACAC
ACTTTTTTCTTCCC-AATCTTGTAGCACGACCTTGAGTCACACAGCAATGAACGGAGAGGTCCAAATTATTTTGTGACAA
TGTAATCCCTACTTCTTTATATTTTCTA--------------------------TTCTGCATCCAGTTGTCTGCCTCTTG
TGATATTA---------------ATTAATTAGATTTGAAATGCACTTTGGGTGTTTTTACTTTTATAAAAAAAATCGTTG
TTATTATGATTTCCTTTCAAAAAAGGGGAGAAAAACCCCCCGGACTCTGCATCGGTCCAGCTAACTAGTGTCGAGTTCAT
CCGAGTTTTCTCACCAACACGGTAACATCTCT-GGAAAAGCAGTGGCGGTGCACCCTGCAAAGTGCAAGCTACTCCACTT
TTGGACGTTAGATAGGGCAGTCGATCTGCCCGTCGCTACCGAGCCACTGGTCGCTCGTCCAACAAAGCATCCGAGCACCT
ATAAATTGAACCACGAGCCCACGACACGACGGCACGACCACCCATCGCTCACACAGTGCATCACGAACTTAACCCCGGTT
CACTCCGATCATCATCCACCCACCGATGGCCCGACGCCGGAGCAGCGGCGGCATCTCGTCCGCGCTGAGCCTGGGGCTCG
CCGTGATGGCCGTCACATGGGCGACGTCCACGGCGCAGCAGCAGCAGCAGCAACCGCCGGCCGTGCCAAGCGTGAGCGTG
CCGAGCTGCCCGCCGGTGCAGGCCTCGTTGTCGCCGTGCGTGAGCTACTTCATCGGCAACTCCTCGTCGCCGTCTGACAC
GTGCTGCGTCCAGATGCGGGCCCTGTTCCAGTCGGAGGCGCCCTGCCTCTGCGCCGCCGTGTCCGCCGTGCCGTCCCAGC
TCGGGTCCGTGGTCGGCGGCCTGCTCCCCACCGCCTGCAACCTGCCCCCCAACGCCTGCTCCGGTACGTGCATGCTGCCA
GCGAGATGCTCCTACATGTAGAAAAACTGGAAAGTTCTGACCATTTTTGTTGGTGTGTCATCGTCGCCACCTGGACTCAC
TCCACCGCAGCTCCGACTTCAAAGCAACCAAGCAACCTACAGAAGAGCACCTTGGACACGCCCGAAAGAACCGACTATCG
AAGTCCATGCCGCGACCCAAGCTCCTCTCGATGCCATCATCGTTGCCAAAAACAAAAACCAGCGCCCCAGCTCGGTGATA
CGTCTCCAACGTATCTATAATTTTTTATTGTTCCATGCTACTATATTATCTGTTTTGGATGTTTATGGGCTTTATTATAC
ACTTTTATATTATTTTTGGGACTAACCTATTAACCGGAGGCCCAACCCAAATTGTTGTTTTCTTGCCTATTTCAGTGTTT
CGAAGAAAAAGAATATCAAACGGAGTCCAAACAGAATGAAACCTTCGGGAGAGTTATTTTTGGAACGGAAGCAATCCAGG
AAACTTGGAGTATACGTCAGGGAAGCTTCGAGGTGGCCACGAGGCAGGGAGGCGCACCTACCCCCTGGGCGCGCCCCCAC
CCTCGTGGGCCTCTCGTGGCTCCCCTAACCGAGTTCTTTCGCCTATATATGTCCATATACCCTAAAAACATCGAAGAGCA
CAATAGATCAGGAGTTCCACCGCCAGAAGCCTCCATAGCCACCGAAAACCAATCTAGACCCGTTCCGGCACCCTGCCGGA
GGGGAGAATCCCTCTCTGGTGGCCATCTTCATCATCCCGACGCTCTCCTTGACGAGGAGGGAGTAGTTCACCCTCGGGGC
TGAGGGTATGTACCAATAGCTGTGTGTTTGATCTCTCTCTCTCTCTCGTGTTATTGAGATGGTACGATCTTGATGTATCG
CGAGCTTTGCTATTATAGTTGGACCTTATGATGTTTCTCCCCCTCTACTCTCTTGTAATGGATTGAGTTTTCCCTTTGAA
GTTATCTTATCGGATTGAGTCTTTAAGGATTTGAGAACACTTGACGCATGTCTTGCATGTGCTTATCTGTGGTGACAATG
GGATATCACGTGATCCACTTGATGTATGTTTTGGTGATCAACTTGCGAGTTCCGTGAACTTATGCATAGGGGTTGGCACA
CGTTTTCGTCTTGACTCTCTGGTAGAAACTTTGGGGCACTCTTTGAAGTTCTTTGTGTTGGTTGAATAGATGAATCTAAG
TTTGTGTGATGCATATCGTATAATCATACTCACGGATACTTGAGGTGACATTGGAGTATCTAGGTGACATTAGGGTTTTG
GTTGATTTATGTCTTAAGGTGTTATTCTAGTACGAACTCTATGATAGATTGAACGGAAAGAATAGCTTTATGTTATTTTA
CTACGAACTCTTGAATAGATCGATCAGAAATGATAACTTTGAGATGGTTTCATACCCTACAATAATCTCTTCGTTTGTTC
TTCGCTATTAGTGATTTTGGAGTGACTCTTTGTTGCATGTTGAGGGATAGTTATATGATCAAATTATGTTATTATTGTTA
AGATGACTTGCACTAGTGAAAGTATGAACCCTAGGCCTTATTTCCACGCATTGCAATACCGTTTGTGCTCACTTTTATTA
TTAGTCACCTTGTCGTTTTTATATTTTCAGATTACAAAAACCTATATCTACCATCTATATTGCACTTGTATCATCATCTC
TTCGTTGAACTAGTACACCTATACAATTTACCATTGTATTGGGTGTGTTGGGGACACAAGAGACTCTTTGTTATTTGGTT
ACATGGTTGCTTGAGAGAGACCATCTTCATCCTACGCCTCCCACGGATTGATAAATCTTAGGTCATCCACTTGAGGGAAA
TTTGCTACTGTCTTACAAACCTCTGCACTTGGAGGCCCAACAACATCTACAAAAAGAAGGTTGTGTAGTAGACATCACTC
AGCAAACCATGCGGTCAAGATGCCGCCATCCAGCGGTCTCCTGGCCGTAGCCGGCTCCGAGACGATGCTCCCAAGGAGGA
AAAAGACACGAAAACGTCTCCATCACCCAATCCAACAGATCTGAGGTTTCCCTCCGGAGCCAATGCCGTGGGGAGGAGGA
GCACACCTCCACGACAACGCTTCCAAGAAAGGTCGCGGCACCCACGGGTGCCGCCGTCGCCTGCTCCGATGAAGAGCGAA
CGAGGATTTCTCCTGGACATGTGTCGACCACCTGCCCCCACCGACCGCCGCCAACCAACCACCATACCAGTTGAGGCCAA
CCTTACTCTGGACGCGAGATCCCACGATCCACTGCGCCTAGGAACGCACCACCCCTTGGGCGTAGCAACCGCCCACCACA
GCAACCAACGCGCCGCAAGCAGCAGCCCCCGGATCAGAGAACCACCAATGGCTAAACCCAAAATGGAGTCACTCCAACGA
AGCAGCAGAGCAGATGAGCATGCCCTTCACCGCAGCACACCTCGAGCTCCGGTGACGCATGCCCGCCGCGCCCCACCAGT
CACCGCGCCCGTCGCGCGCAAGCTGCCGCCGCGCTAGTCCATCGATCTGTGCACCACACGCACATCCAAGGCCGAGAGCC
GCCTCGCGCATGGGCTCCGGTGGAAGATTCAGATTGGAAAGGTGCACATTTTCCAATTGAAGCTCCAAGAATAGAATTCG
ACCATGAGTCCAGGACCGATAACATCTCTGGAAAAGGTGCACATTCATCCGAGTTTTCTCACCAACACGGTAACATCTCT
GGAAAAGCAGTGGCGCTGCACCCTGCAAAGTGCAAGCTACTCCACTTTTGGACGTTAGAT-----AGGGCAGTCGATCTG
CCCGTCGCTACCGAGCCACCGGTCGCTCGTCCAACAAAGCATCCGAGCACCTATAAATTGAACCACGAGCCCACGGCACG
ACGGCACGACCACCCATCGCTCGCACAGTGCATCACGAACTTAACCCCGGTTCACTCCGATCATC-ATCCAC---CCACC
GATGGCCCGACGCCGGAGCAGCGGCGGCA---TCTCGTCCGCGCTGAGCCTGGGGCTCGCCGTGATGGCCGTCACATGGG
CGACGTCCACGGC---------GCAGCAGCAGCAGCAGCAGCAACCGCCGGCCGTGCCAAG------CGTGAGCGTGCCG
AGCTGCCCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTGAGCTACTTCATCGGCAACTCCTCGTCGCCGTCCGACACGTG
CTGCGTCCAGATGCGGGCCCTGTTCCAGTCGCAGGCGCCCTGCCTCTGCGCCGCCGTGTCCGCCGTGCCGTCCCAGCTCG
GGTCCGTGGTCGGCGGCCTGCTCCCCACCGCCTGCAACCTGCCCCCCAACGCCTGCTCCGGTACGTGCATGCTGCCAGCG
AGATGCTCCTACATGTAGAAAAACTGGAAAGTT----------CTGACCATTTCTGTTG----GTGCGTGTGTGTGCAGC
TGTGACAGGGACCTCGGGCTCTGCTCCGGCCGGTGGCGCAGCGGCGCCGTCGTCGTCAGGGACACCTACTGATGCTGCTG
CCGCCGCGCCGGTGACCGGTCCGGCTGATGCGAACCCGGCTGGTACGCCTTCCGGTGGTGGGGTGAAGTCGGTTCCGGGG
ACGGTTGATTCGGCTGCC------GTTGAGTGCAAGGGTACCTCCGCTGCCGTCGTCG---TCCTGGCCATGGCTGCCTC
GTTCCTAGTAGCTGCTTCTGTTTTCTGATCTCATTGTGTGATTCCGGCCGGGGTTTGCTGTGAGCTTGTCACACGATTAG
AT------------------------------------------------------------------------------
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---------------------------------------------------
>chr4A_617
--------------------------------------------------------------------------------
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-----------------------ATTAATTAGATTTGAAATGCACTTTGGGTGTTTTTACTTTTATAAAAAAAATCGTTG
TTATTATGATTTCCTTTCAAAAAAGGGGAGAAAAACCCCCCGGACTCTGCATCGGTCCAGCTAACTAGTGTCGAGTTCAT
CCGAGTTTTCTCACCAACACGGTAACATCTTT-GGAAAAGCAGTGGCGGTGCACCCTGCAAAGTGCAAGCTAC-------
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----------------------------------------TCCACTTTTGGACGTTAGAT-----AGGGCAGTCGATCTG
CCCGTCGCTACCGAGCCACCGGTCGCTCGTCCAACAAAGCATCCGAGCACCTATAAATTGAACCACGAGCCCACGGCACG
ACG--------------------CACAGTGCAGCACGAAATTAACCCCGGTTCACTCCGATCATC-ATCCATCCACCACC
GATGGCCCGACGCCGGAGCAGCGGCGGCA---TCTCGTCCGCGCTGAGCCTGGGGCTCGCCGTGATGGCCGTCACATGGG
CGACGTCCACGGC---------GCAGCAGCAGCAGCAGCA---ACCGCCGGCCGTGCCAAGCA------TGAGCGTGCCG
AGCTGCCCGCCGGTGCAGGCCTCGCTGTCGCCGTGCGTGAGCTACTTCATCGGCAACTCCTCGTCGCCGTCCGACACGTG
CTGCGTCCAGATGCGGGCCCTGTTCCAGTCGCAGGCGCCCTGCCTCTGCGCCGCCGTGTCCGCCGTGCCGTCCCAGCTCG
GGTCCGTGGTCGGCGGCCTGCTCCCCACCGCCTGCAACCTGCCCCCCAACGCCTGCTCCGGTACGTGCATGCTGCCAGCG
AGATGCTCCTACATGTAGAAAAACTGGAAAGTT----------CTGACCATTTCTGTTG----GTGCGTGTGTGTGCAGC
TGTGACAGGGACCTCGGGCTCTGCTCCGGCCGGTGGCGCAGCGGCGCCGTCGTCGTCAGGGACACCTACTGATGCTGCTG
CCGCCGCGCCGGTGACCGGTCCGGCTGATGCGAACCCGGCTGGTACGCCTTCCGGTGGTGGGGTGAAGTCGGTTCCGGGG
ACGGTTGATTCGGCTGCC------GTTGAGTGCAAGGGTACCTCCGCTGCCGTCGTCG---TCCTGGCCATGGCTGCCTC
GTTCCTAG---CTGTTTCTGTTTTCTGATCTCATCATGTGATTCCGGCCGGGGCTTGATGTGAGCTTGTCACACGATTAG
ATGGATGATGTTCCGCTTGGTATCACTCAGTT--------TGTCACTCATTTGATCCAGTGCACATCAGAACTGTGACAC
TTTACTCTTTTTTATTGGTTATCATCCCCAATGCGCATCAGAGTTGTCACCTGGTGGT----------------------
--------------------------------------------------------------------------------
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---------------------------------------------------
>SNPs
-SSS-SSS-SSSSSS-SS-S-SSS-SS--SSS-SS-SSSSSSSSSSSS-SSS-----SSSS-SS-SSSSSSSSSSSSSSS
SSSS-S-SSSS-S-SS---SS-SSSS--S-SSSS-SS-SSSSSS-S-S--SSS-SSSSSSSSSSSS--SSSS-S-SS-SS
SSSSSSS-SSS-S-SSS--SS-SSSSS-SSSSSSSSSSSSSSSSSSSSSS---------------S---S-S--S-S---
----S-----S-------------SSS-----------------------------------------------------
--------------------------------------------------------------------------------
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----------------------------------------------------------------------------S-S-
----S-------------S----------S-----------------------------------------S-S------
S--------S----S--------------------------------S------------------------------S-
----------S------------------S--------------------------------------------------
-----------------------------------------------------------S----S-------S-------
--------------------------------------------------------S------S----------------
-----------------------S--------------------------------------------------------
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------------------------------------------------------------SSSSS---------------
-------------S-----------S------------------------------------------------------
--------------------------------S--S-----------------------------S-----------S--
----------S--------------S-------S----------------------------------------------
----------------------------------------------------------S---SSSSS-------------
--------------------------------------------------------------------------------
---------------------------------------S----------------------------------------
-------------S---------------------S-----------------------------S------------SS
SSSS-SSSSSSSSSSS------------------S--S---------------------S------S-------------
-------------S-SS-------------SS--------------S--------S----S-----------------S-
-S------------------------------S-----------------------------------------------
--------------S--SSSSSSS--------------------------------------------------------
-----------------S----S------S---------------S--------S-----------S---------S---
-------------------SS-SS-S--------------------------------------------SS--------
S-------S---------------------S------S------------------------SSS----S----------
-----S--------------SS---------SS--------------------------S----SSSS------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------S---------S----S--------------S----S-----S--------S--
SS------SS-----------------------S--------S-------S----S-----------------------S
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------S-------------------S-----S-
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------S-------------S----S--------
--SS-----S----------S------SSSSS------------------------------------------------
-----------S---------------------S---------SSS-S--S-----SSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_267
--------------------------------------------------------------------------------
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-------ACAAAGGCTGAGGCGAATGA-----------------------------------------------------
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---------------------------------------------------
>reverse_11420
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-----------------------------------------------------------CTGTGTGTGTGTGTGTGCAG-
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---------------------------------------------------
>forward_11374
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--------------------------------------------------------------------------CCATGC
CAGCGACATACTGA------------------------------------------------------------------
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
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---------------------------------------------------
>reverse_12962
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
-CCGACAATGGTCACCACTCA-----------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------
