>input_sequence_71583
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----------------------------ATGGCGCGCTCCAGAGTCTCGATCATGCCGTCGCCGGTGCTCCTGTTGATCG
TGGCCGTCGCCGCGCTCGTCTCGGCGTGCGCGGCAGACCCGGAGCCGGTGCAGGACTTTTGCGTGGCGGCGGCCACCAAC
GGCTCGGCCGACCATCCATCGTACCCGGGGTTCCCGTGCAAGCCGGCGTCGGCGGTGGTCTCCGACGACTTCTTCTTCGC
GGGGCTGGCGCGCTCGGGCGCCGCCGACGCGGCCGAGAGCCCGTTCGGGTCCAGCGTCACGTCCGGCAACGTGGCGGCCT
TCCCGGGGCTCAACACGCTCGGCGTCTCCATCAACCGCGTCGACCTCGCCCCCGGCGGCGTCAACCCGCTCCACAGCCAC
CCGCGCGCCGCCGAGCTCGTGCACGTCGTCACCGGCCAGATGCTCGTCGGGTTCGTCAGCACCGCCGGCACCTTCTACTC
CAAGGTGGTGCGGGAGGGCGAGAGCTTCGTCATCCCGCGCGGCATGGTGCACTTCCAGTTCAACACCGGCAAGGAGGCCG
CCAGGGCCGTCACTGTGTTCAACAGCCAGCTCCCCGGAGTTGTCCTTGCCGCGCCGTCGCTCTTCGGCGCCGACCCGGAG
ATCCCCGACGCCGTCCTCTCCAAGAGCTTCCAGGTCGACGGCGAGATCATCAAGCTCCTCAAGTCCAAGTTCCGGACTTA
A-------------------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G453200
GAGAAGGTTGGGCAATCCACGCACACTTCAACGGTAT----GCTTGTGTTCCCGCCAACAAGAAAAAAAACC--CGGCAT
GCTTGTGTATGTGGTGAGCACTTCATGACAT-GAGTGCGCGTGGTTCAGTTCACCTTCCAATCAATTGGAGAAGAAACAA
GAAAC--CTCTTTGGCCGACCGGGTC-TCCTCCGCTCTCCACCAACCAAAAATCTTCGTCACCCTG------GCTCGCAC
GTCAAGCCACTGTTGTTCGTCACTGATGGCGATGATGAACACGCGACCAGTCTCCAGTCGCCAAAGCACTAGGATTTGAA
AGCGTCTTGCAAAAAAGAATCTAGATGA-TTGGCGCCAAACACCAACCGCAGCTAACAAATTAGCCAGGGCGACCGTGGT
---AAAAAAGGCGTCGATAACGCGTGCGTGGATTCCGTGCTCCCGGTTGGACTTTGCACCAATTAGTTTAGAAAA-AAAT
AAAATCCGAAGACATATACTTTAAAATTTCAAAAAA---AATCTTGAAACAAGTATGTCAATTACAT-------------
-----------------TTGCGTGTGAAAATGTGTTAGTTCATGTTCTTCAACAAGTGATA---AAAAATTGTGCCTACG
AGCAAAGCACTTTA-CTGCACCGAATTTGTTATTTTTTCACGAGGCACAAAAATTCATGTAATTGCACCAAACGTAAAGC
TTTGTTTGCAAAACTTTGTGTATTTTT-----TATTTTTGTAGAAAACACAAAAAAATGGGAATTTTCGTTGGTCATGGC
GTGTGTCCCCGATTAGTTACCGATGACGATGCACGGAAACTTCGAACAAGACATGTCCACGTCTCGGTGCGAAATGAAGG
GAGACTTTAGTGAGCTTTTGAATCCTTCAACC-----CCTTTGACATTTGTTCCCTCCCTTCATCCCAACTCTTCTCTCC
CGTGTTATATATACACCCATCCCCGATCATCCTCACCACAGTACCACAACACGTACGCGCCAACAACCTCATCGGCTCTT
TTTTTTAAAAAAAAAAATCTCGTCGGCAATGGCGCGCTCCAGAGTCTCGATCATGCCGTCGCCGGTGCTCCTGTTGATCG
TGGCCGTCGCCGCGCTCGTCTCGGCGTGCGCGGCAGACCCGGAGCCGGTGCAGGACTTTTGCGTGGCGGCGGCCACCAAC
GGCTCGGCCGACCATCCATCGTACCCGGGGTTCCCGTGCAAGCCGGCGTCGGCGGTGGTCTCCGACGACTTCTTCTTCGC
GGGGCTGGCGCGCTCGGGCGCCGCCGACGCGGCCGAGAGCCCGTTCGGGTCCAGCGTCACGTCCGGCAACGTGGCGGCCT
TCCCGGGGCTCAACACGCTCGGCGTCTCCATCAACCGCGTCGACCTCGCCCCCGGCGGCGTCAACCCGCTCCACAGCCAC
CCGCGCGCCGCCGAGCTCGTGCACGTCGTCACCGGCCAGATGCTCGTCGGGTTCGTCAGCACCGCCGGCACCTTCTACTC
CAAGGTGGTGCGGGAGGGCGAGAGCTTCGTCATCCCGCGCGGCATGGTGCACTTCCAGTTCAACACCGGCAAGGAGGCCG
CCAGGGCCGTCACTGTGTTCAACAGCCAGCTCCCCGGAGTTGTCCTTGCCGCGCCGTCGCTCTTCGGCGCCGACCCGGAG
ATCCCCGACGCCGTCCTCTCCAAGAGCTTCCAGGTCGACGGCGAGATCATCAAGCTCCTCAAGTCCAAGTTCCGGACTTA
AAAAACGACGCACGAGCTTCACGGTCGAAGCTGCCTGTTGTTAGCTTGATTGGTTTATTGTTACAC-ATATACACTGTAC
ACCAGTAAATACGGACACCTAAAGTTGTTCACTGTTTCATGTAATTTTGATTGGATATTAAATGCGCCAATAAAATTTAA
GGTTTTTTTCAAGGAAAAGCATCAGCCTGACTTTATAAATAAAGCCACCAGGCAGCGTTCCAGGGCTCACAGGCCACAAC
CTCGGCACGCAGGCCGGAACTAAGAAACATGAACCAAGAGCGATAAGCAAACACTGCCAATAGCTAAGCCAAAAGGTCAT
CCAGGAGATCTAGCCATGTGGCTCTTGCTGTGATGAAGAAGACGATGAAGCCTGAATTTTAGAAGATAGGAGGTCCAAGG
CGTCTCGGTCTTCCGTCTTAGTCAATGATATCCACTACTGCAGAAACATGCAAGATTTAAATAAGCAATCCGCAGGTTTA
GAAGGAAAAATAAGTTCAAAAAATTTAAATTCAAATTCAGTTCATTTTAAAACCAAACTTTTACCTCTTGCTTCAGAGGA
AGGAAGAAGATGAGGGCCTTTTTAGAGGTTTGAAAGTACAAGGACTTTCTTGCAAATATCAGGTGTACTCCACGTGCGAG
ACACGTAAAACGGGACGTAGGGAATAATAATAAGTTTGTATTGTACCCCATCCGTAAATAAATGTAGGAGTGTTTAGATC
AAGCAAGTCTATATCATATTTTTACAGCATTTTACGTCAAACATTTGATTTTACAGCATGTCCCCACATGTCAGGGCCAC
GTGGCGTTGACTTGAGCATATACATTTTAGACAAGAATGAGGGTAAGAACAAGTTTGGCGTTTGGACTTGAGATTATGAG
AACAAAATTGCATTATTTATTCAGAGTAGCAAAAATTCATATTCAGATCCGTGAACGACTCATTGTTCTTGGTGTCCTGT
CCTTTGAAGCGATGCTGCTGCTGCAGACCAGAGTCGTCGTCG
>chr5D_1
GAGAAGGTTGGGCAATCTACGCATACTTCAACGGTATATATGCTTGTGTTCCCGCAAAAAATAAAAAAAATAAACGGTAT
GCTTGTGTATGTGGTGAGCATTGCATGACAT-GTGTGCGCGTGGTGCAGTTCACCTTCCAATCAATTGGAGAAGAAACAA
GAAAC--CTC-TTGGCCGACCGGGTCCTCCTCCGCTCTCCACCAACCAAAAATCTTGGTCACCCTAGCG------CGCAC
GTCAAGCCACTGTTGTTCGTCACTGATGGCGATGATGAACACGCGACCAGTCTCCAGTCGCCAAAGCACTAGGATTTGAA
AGCGTCTCACAAACAAGAATCTAGATGA-TTGTCGCCAAACACCAACCGCAGCTAACAAATTAGCTAGAGCGACCGTGGT
---AAAAAAGGCGTCGATAACGCGTGCGTGGATTCCGTGCTCCCGGTTGGACTTTGCACCAATTAGTTTAGAAAA-ATAT
TCAA----AAGACATATATTTT--AATTTCAAAAAA---AATCTTGAAACAAGTATGTCAATTACATATGGTACTAGTAT
ACTATGCACATACAAATTTGCGTGTTAAAATGTGTTAGTTCATGTTCTTCAATCAACAAATGATAAAAATGGTGCCTGCT
AGAAAAGCAGTTTTTCTGCACCGGATTTGTTATTTTTTCACATGGCACAAAAATTCATGTGATTGCACCAAACGTAAATC
TTTGTTTGCAACACTTTGTGTGTTTTT-----TATTTTTTGTAAAAAACAAAAAAAATGGGAATTTTCTTTAGTCATGGC
GTGTGCCCCCGATTAGTTACCGATGACGATGCACGGAAACTTCCAACAAGACATGTCCACGTCTCGGTACGAAATGAAGG
GAGACTTTAGTGAGCTTTTGAACCCTTCAACCCCGGCCCTTTGACATTTGTTCCCTACCTCCATCCCAACTCTTCTCCGG
---GTTATATATACACCCATCCCCGATCATCGTGACCACAGTACCACAACACGTACGCACCAACAATCTCATCGGCTCTT
TAAAAAGAGAACG----TCTCATCGGCAATGGCGCGCTCCAGAGTCTCGATCATGCCATCGCCGGTTCTCGTGTTGACCG
TGGCCGTCGCCGCGCTCGTGTCGGCGTGCACGGCGGACCCGGAGCCGGTGCAGGACTTCTGCGTGGCGGCGGTCACCAAC
GGCTCGGCCGACCATCCGTCGTACCCGGGGTTCCCGTGCAAGCCGGCGTCGGCGGTGGTCTCCGACGACTTCTTCTTCGC
GGGGCTGGCGCGCTCGGGCGCCGCCGACGCGGCCGAGAGCCCGTTCGGGTCCAGCGTGACGTCGGGCAACGTGGCGGCCT
TCCCGGGGCTCAACACGCTCGGCGTCTCCATCAACCGCGTCGACCTCGCCCCCGGCGGCGTCAACCCGCTGCACAGCCAC
CCGCGCGCCGCCGAGCTCGTGCACGTCGTCGCCGGCCAGATGCTCGTGGGCTTTGTCAGCACCGCCGGCACTTTCTACTC
CAAGGTGGTGCGGGAGGGGGAGAGCTTCGTCATCCCGCGCGGCATGGTGCACTTCCAGTTCAACACCGGCAAGGAGGCCG
CCAGGGCCGTCACCGTGTTCAACAGCCAGCTCCCCGGAGTTGTCCTTGCCGCGCCGTCGCTCTTTGGGGCTGACCCGGAG
ATCCCCGACGCCGTCCTCTCCAAGAGCTTCCAGGTCGACGGCGAGATCATCAAGCTCCTCAAGTCCAAGTTCCGGACTTA
AAAAACGACGCACGAGTAATT------------------------TTGATTGGTTTATTGTTCATATATATATACTGTAC
ACCAGTAAATACGGACACCTAAAG-TGTTCACTGTTTCATGTAATTTTGATTGGATATTTAATGCGTCAATAAAATTTAA
G-------------------------------------------------------------------------------
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>chr5B_69
--------------------------------------------------------------------------CGGTAT
GCTTGTGTATGTGGTGAGCATTGCATGACGACGTGTGCGCGTGGTTCGGTTCACCTTCCATTCCATCGGAGAACAAGTGA
AAAATCTCTT-TTGGTCGACCGGGTC-TCCTCCGCTCTCCACCAACCAAAAATCTTGGTCACCCTCACCCTAGCTCGCAC
GTCAAGCCACTGTTGTTCGTCACTGATGGCGATGATGAACACACGA-------CCAGTCGCCAAAGCACTAGGATTTGAA
AGCGTCTTACAAAAAAGAATCTAGATGATTTGTCGCCAAACACCAACCGCGGCTAACAAATTAGCTAGGGCGACCGTGGT
AAAAAAAAAGGCGTTGATAACGCGTGCGTGGATTCCGTGCTCCCGGTTGGACTTTGCACCAGTTAGTTCAGAAAATATAT
TCAA----AGGACATGTATTTTAAAATTTCAAAAATAATAATCTTGAAACAAGTATGCCAATTACATATGGTACTAGCAT
ACGATGCACATACAGATTTGCGTGTGAAAATGTGTTAGTTCATGTTCTTCAATCAACAAATGATA----TGGTGCCTGCT
AGAAAAGCAGTTTTTCTGCACCAAATTTGTT-TTTTTTCACAGGGCACAAAACTTCATGTAATTGCACCAAACATAAAGG
TTTGTCTGTAACACCGTGTGTATTTTTCACTATTTTTGTAAAGAAAAAAGCAAAAGCTGGGAATTTTCTTTAGTCATGGC
GTGTGCCCCCGATTAGTTACCGATGATGATGCACGGAAACTTCCAACAAGACATGTCCACGTCTCGGTACGAAATGAAGG
GAGACTTTAGTGAGCTTTTGAACCCTTCAACCCCGGCCCTTTGACATTTGTTCCCTACCTCCATCCCAACTCTTCTCCGG
---GTTATATATACACCCATCCCCGATCATCGTGACCACAGTACCACAACACGTACGCACCAACAATCTCATCGGCTCTT
TGAAAAGAAAACG----TCTCGTTGGCAATGGCGCGCTCCAGAGTCTCGATCATGTCATCGCGGGTGCTCCTGTTGATCG
TGGCCGTCGCCGCGCTCGTGTCCGCGTGCGTGGCGGACCCGGAGCCGGTGCAGGACTTCTGCGTGGCGGCGGCCACCAAC
GGCTCGGCCGACCACCCGTCGTACCCGGGGTTCCCGTGCAAGCCAGCGTCGGCGGTGGTCTCCGACGACTTCTTCTTCGC
GGGGCTGGCGCGCTCGGGCGCCGCCGACGCGGCCGAGAGCCCGTTCGGGTCCAGCGTGACGTCGGGCAACGTGGCGGCCT
TCCCGGGGCTCAACACGCTCGGCGTCTCCATCAACCGCGTCGACCTCGCCCCCGGCGGCGTCAACCCGCTGCACAGCCAC
CCGCGCGCCGCCGAGCTCGTGCACGTCGTCTCCGGCCAGATGCTCGTGGGCTTCGTCAGCACCGCCGGCACTTTCTACTC
CAAGGTGGTGCGGGAGGGGGAGAGCTTCGTCATTCCGCGCGGCATGGTGCACTTCCAGTTCAACACCGGCAAGGAGTCCG
CCAGGGCCGTCACCGTGTTCAACAGCCAGCTCCCCGGAGTTGTCCTCGCCGCGCCGTCGCTCTTCGGCGCTGACCCGGAG
ATCCCCGACGCCGTCCTCTCCAAGAGCTTCCAGGTCGACGGCGAGATCATCAAGCTCCTCAAGTCCAAGTTCCGGACTTA
AAAAACGACGCACGCTTAATT------------------------TTGATTGGTTTATTGTTAT----TATACACTGTAC
ACCAGTAAATACAAACACCTAAAGTTGTTCACTGTTTCATGTAATTTTGATTGGATATTAAATGCGTCAATAAAATTTAA
G-------------------------------------------------------------------------------
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>SNPs
-----------------S-----S-------------------------------S--S--S--------SS-----S--
--------------------S-S----------S----------------------------------------------
----------S---------------------------------------------S--------S--------------
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--------S-----------------------S--------------------------------S--------------
-----------------------------------------------------------------------------S--
SS--SSSS----------S-------------------------------------------------------------
----------------------------------------------------SS-SSS-SS---------S------S-S
--S------S---S---------------------------SS-------------------------------------
-----------S---------------------------SS------S-S------------------S--S--------
-----S-------------------------------------S------------------------S-----------
----------------------S---------------------------------S---S----------------SSS
SSS----------------------------S-S------------------------S-------S-------------
-SSSSSS----SSSSSS----------------------------------------S----------------------
-------------------S--------------S-----------------------S---------------------
-----------------S--------------------------------------------------------------
---------------------------------------------------------S-----S----------------
----------------------------------------------------------------------S---------
------------------------------S----------------S--S--------------------S--------
------------------S-------------------------------------------------------------
-------------S--------------------------------------------------------S---------
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----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------SSS--------------
------------------------------------------------------------------S-------------
-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_62
------------------------------------------CTTGTGTTCCCGCCAACAAG------------------
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>reverse_1786
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-------------------------CGAAGCTGCCTGTTGTTAGC-----------------------------------
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