>input_sequence_71576
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------ATGCCGCCGGCTGTCGTGCCCATCGAAGACGGCGGCTGCGGCGGCGCCAAGAAGGAGGAGGCCGTCTGCCGAAG
CTGCCACGTCGCGTGGTCGACGTGGCTGTCCCGCCTCGGCCGGTGCCTCCTCGCCTCCACGCTCCACCCGTGTCACGCCG
CGCTCGGCCTCTCCCCGCCG---GCGCCCTGCTTCGCCTCCTCCCCCGTCGTCATCCGGGGCACGCTCTTCCTCCCGTCA
ACCGGCGACCGCCGCGTCCGCCTCTTCCTGCACGAGCACGC------GGCGCCCGCGGAGTCAGCCGTGCCCACGCCGAT
CCTGGTCCTCGACCTGCCGGGCGGCCTCGTGGGCGCGGACATCGCCGCCGCCGGCAGGATCGTGCTCGAGTGCCAGCGGG
AGTGGGCCGGCAGCGCAGGTGCTCTCCTGGAGTCGCCGAAGTGGATGGTGTACTGCAACGGCAGCCGCGTGGGATTCGCG
GCCAGGCGGGAGACGATGTCGGACGGGGAGGGGTGGGCGATGGACAAGCTCTGGGCCGTGAGTGCCGGCGCGGGGCGGCT
TCCCGGCGGAGGGGTGGAGTACCTGCGGGGGCAGTTTGAGAGGATCGTCGGGTCGGCCGATGCGGAGTCGTTCCACCTCG
TGGAGCCGCTGGGGTGGCTGGGAGTCCACGGCGACGGCGGCCTTAGCATCTTCTTCCATCGGATTTGA------------
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>chr4B_1_TraesCS4B01G063300
GCGTCGGCCAGGTCCTCCTCCACCGCCCAATCAGCCCACCGAGCGCGGTCGAGGAGGTCGATTCGGGGGGCGGAGGCGAG
CGCCAAAGGCGGAGGGGAGGGGGTCCCCATGGGGGCACCACGAGGAGGCCGGGCCAGAAGGGGGGCCGGCGGGAGCGCCG
GCGAGGGAGGCCACCAGCCGTCGCACGCGCCGCCAACGTCGTCCTCCCCTCAACACTCCATGGTTGGAAACGGAAGTTTT
CAACTCTAGGATCTCAGCTACTCGACTAGTTGTTTTTTCCTTTTTATAAAGCGAGACAAAAGTTTTTTCGAGAGATAGGA
TGAATAGG-------------ATCACGTGGATAACAATTGGTCAAGACCACATTGGTTAGCATTGAAGCCGTGCTGGCTG
GGTGGAGGGATGATGCTTTCCTGGTTTGGAAAATTAAGGTGAAACTTGCCCTCTTCTATTTACTGGCTAAGTCTTGAAGT
TTTTTCACATATAATCCGTTTGGTTTTGGAGAGACTAGTGATCTTTTGCCCTTCGAAGCATGTCACCTCTGTTTTGTTCC
TTTGTTCAGCCATTTGATTTTGTGTCTATC----TGTATGTGAAATTTGTAATGTGAGAGCATAGACTCATATT-----T
TTTTTCGCTTTATTCAGAAAGCATAGGTTGGGATCGTATGTTCAATATCAGAACTTGCAAAGGGGGACAATTGAGGTCTC
ACAATCAACATCTTCGGCGATTGTTCGCT--GTAGACGACGGCGGCCAGACGGAGTGCTGAGGGGTTCGGATAGGGGGC-
----CCAAGGCCGGACCGGACACGTCAAGCGTTAGTTATCACCTGCCGCATCCATCTGCATGCATGCAAACCACCAAAAG
CA----GTATCCGAACGAACTCTCGATCATCTCGGTTCATCGATCTCAAACCCTAATTAAACCCTTCCAAAGCTTTAGGC
TT-CCACTTTTTATATTCCTCTGGCGGCTCTCGTGCGTATATACAGTACACCAACCGCG------------CCCATATAT
GCGCGCATGCCGCCGGCTGTCGTGCCCATCGAAGACGGCGGCTGCGGCGGCGCCAAGAAGGAGGAGGCCGTCTGCCGAAG
CTGCCACGTCGCGTGGTCGACGTGGCTGTCCCGCCTCGGCCGGTGCCTCCTCGCCTCCACGCTCCACCCGTGTCACGCCG
CGCTCGGCCTCTCCCCGCCG---GCGCCCTGCTTCGCCTCCTCCCCCGTCGTCATCCGGGGCACGCTCTTCCTCCCGTCA
ACCGGCGACCGCCGCGTCCGCCTCTTCCTGCACGAGCACGC------GGCGCCCGCGGAGTCAGCCGTGCCCACGCCGAT
CCTGGTCCTCGACCTGCCGGGCGGCCTCGTGGGCGCGGACATCGCCGCCGCCGGCAGGATCGTGCTCGAGTGCCAGCGGG
AGTGGGCCGGCAGCGCAGGTGCTCTCCTGGAGTCGCCGAAGTGGATGGTGTACTGCAACGGCAGCCGCGTGGGATTCGCG
GCCAGGCGGGAGACGATGTCGGACGGGGAGGGGTGGGCGATGGACAAGCTCTGGGCCGTGAGTGCCGGCGCGGGGCGGCT
TCCCGGCGGAGGGGTGGAGTACCTGCGGGGGCAGTTTGAGAGGATCGTCGGGTCGGCCGATGCGGAGTCGTTCCACCTCG
TGGAGCCGCTGGGGTGGCTGGGAGTCCACGGCGACGGCGGCCTTAGCATCTTCTTCCATCGGATTTGATCGAATACTACA
CTGAACTATTGCATATACAAGACGAGGTGCCAATTTTTTTTGCATATACAAGACGAGGTGCCAATTGGCTACTTATCTTC
AAACTCTTCACAAATCAGTGGATGAAACCATTTTTTTT---CTTTGTGCTCCACAGCTATCAGAAGCAATAAGTTAGGAG
CATTCATGGTGGTGCACTGTGTGATAAATACAGTATTTTTCCTTTCTTTCCAAAACGGAATAACCCATGCACCCAAGTGC
ATA--TCCAATAAACTGTACTCCCTCGATCCTTTT-GTGTATACAAAACTACTTAATTAGTCCTATCCTAAGTTCAGATT
GTTTAGGTTCGACCAAATTCATGGAAAACAAATTATCACCTACCAAATCAGTACATCTAATTTTATCAAGACTTAATAAT
TGTGTTTTCATAATGCATTTATGAGGT-ATTGTATGTGTTGGTATTTTTTCTTTTA-----AGTTGGGTAACCCTAAAAT
AGTTTGACTTGACACAAGACCAATTGTTGTATTTGGCATTGTGGCGAATTATCATAACAGTCTTGCTAGGTCTTAGGCAG
TTGATGCTAAATCCGTGAGATCTTACATTAAGATGCGCGCAAAATTTTCTTTTCAATTTTTTCTTTTTCTCTGTTGCATG
TCATTTAACTGGCACTTGGTTAAATATCAGTCGACTGAGACCTAGCCATACCTTTATCATAATCCTCTTCACCCAACCCA
CTTTTCCCCTTGTTATTGGTGTTTGTTGACCCTATTTGGTAAATTCGTGGCTAATTATGCCGAGATGATTACAAAGTAAG
AACAGCGCAACTAGTTCAACAGTCACAAAATCTGATCTTTAAATGACCTTGTATTTGTGAGGAAATTCGTAATATGTGAG
GCCGCATGCCGATATATCTTGCAAATTACGCCAGGAGTGACTATACTTGCTATCAATTATTTTTAGAGTGCACGAGCTAG
CAAAGGATATATGGTTAGTGTAAGGAATATCCTCTAATAT
>chr4A_285
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--------------------------------------------TATAAAGCGAGACAAAAACTTTTTCGGGAGATAGGA
TGAATAGGAGAGAGAAATATTATCACGTGGATAACAATTGGGGAAGACCACATTGGTAAGCATTGAAGCCGCGCTGGCTG
GGTGGAGGGATGAAACTTTCCTGGTTTGGAAAATTAAGGTGAAACTTGCCCTGTTCTATTCACTGACTAAGTCTTGAAGT
TTTTGCACATATAATCCGTTTGGTTTTGTAGAGACTGGTGATCTTTTGCCCTTCGAAGCATGTCAGT--TGTTTTGTTCC
TCTGTTGAGCCACTTGATGTTGTATGTATCTATGTGTATGTGAAATTTGCAATGTGAGAGCATATACTCATATACCATAT
TTTTTCGCTTTGTTCAGAAAGCACAGGTTGGAACCGGATGTTCAATATCAGAACTTGCAAAGGGAGACGATTGAGGTCTC
AACAAG-ACATCTTCGGCGATGTTCGCACACGTGGACGACGGCGGCCAGACGGAGCGCTC--GGGTTCGGATAGGGGCCG
GGGTCCAAGGCCGGACCGGACACGCCAAGCGTTTGTTATCACCTGCCGCATCCACCTGCATGCATGCAAACCACCAAAGG
CCGTACGTATCTGAACGAACTCTCGATCATCTCGGTTCATCGATCTCAAACCCTAATTAAACCCTTCCAAAGCTTCAGGC
TTTCCACTTTTTATATTCCTCTGGCGGGTCTCGCGCGTATATA-----CACCGACCGCGCCCATATATATAC--------
GCGCTCATGCCGCCGGCTGTCGTGCCCGTCGAAGACGGCGGCTGCGGCGGCGCCAAGAAGGAGGAGGCCGTCTGCGAAAG
CTGCCACGTCGCGTGGTCGGCGTGGCTGACCCGCCTCGGCCGGTGCCTCCTCGCCTCCACGCTCCACCCGTGTCACGCCG
CGCTCGGCCTCTCCCCGCCGCCGGCGCCCTGCTTCGCCTCTTCCCCCGCCGTCGTCCGGGGCACGCTCTTCCTCCCGTCA
ACCGGCGACCGCCGCGTCCGCCTCTTCCTGCACGAGCACGC------GGCGCCCGCGGAGACCGCCGCGCCCGCGCCGAT
CCTGGTCCTCGACCTGCCGGCCGGCCTCGTGGGCGCGGACATCGCCGCCGCCGGCAGGATCGTGCTCGAGTGCCAGCGGG
AGTGGGCCGGCAGCGGAGGCGCTCTCCTGGAGTCGCCGAAGTGGCTGGTGTACTGCAACGGCAGCCGCGTGGGGTTCGCG
GCGAGGCGGGAGACCATGTCCGACGGGGAGGGGTGGGCGATGGAGAAGCTCTGGGCCGTGACCGCCGGCGCGGGGCGGCT
TCCCGGCGGAGGGGTGGAGTACCTGCGGGGCCAGTTTGAGAGGATCGTCGGGTCGGCCGACGCGGAGTCGTTCCACCTCG
TGGAGCCGCTGGGGTGGCTGGGAGTTCACGGCGACGGCGGCCTTAGCGTCTTCTTCCATCGGATTTGATGGAAAACTACA
TTGAAC-------------------------------TTTTGCATATACAAGACGAGGTGCCAATTGGCTACTTACCATC
AAACTCTTCACAAATCAGTGGATGGAAACATTTTTTTTC--CTTTGTGCTCCACAGCTATCAGAAGCAGTAAGTTAAGAG
CATTCATGGTGGTGCACGGTGTGACAAATACAGTATTCTTTTCTTCTTTCCAAAACGGAATTACCCATGCACCCAAGTGC
ATATATCCATTAGACTGTACTCCCTCGATCCTTTT---------------------------------------------
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>chr4D_464
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----------------------------------------------------------------------------AAGT
TTTTGCACATATAATCCGTTTGGTTTTGGAGAGACTAGTGATCTTTTGCCCTTCGAAGCATGTCACCTCTGTTTTGTTCC
TTTGTTCAGCCATTTGATTTTGTAT----CTATGTGTATGTGAAATTTGTAATGTGAGAGCATAGACTCAT-----ATAT
TTTTTCGCTTTATTCAGAAAGCATAGGTTGGGATCGTATGTTCAATATCAGAACTTGCAAAGGGAGACAATTGAGGTCTC
ACAATCAACATCTTCGGCGATTGTTCGCT--GTAGACGACGGCGGCCAGACGGAGCGCTC--GGGTTCGGATAGGCGGC-
----CCAAGGCCGGACCGGACACGTCAAGCGTTCGTTATCACCTGCCGCATCCACCTGCATGCATGCAAACCACCAAAAG
CCGT----ATCTGAACGAACTCTCGATCATCTCGGTTCATCGATCTCAAACCCTAATTAAACCCTTCCAAAGCTTTAGGC
TTTCCACTTTTTATATTCCTCTGGTGGCTCTCGTGCGTATATA-----CACCAACCGCG------------C--------
GCGCGCATGCCGCCGGCTGTCGTGCCCGTCGAAGACGGCGGCTGCGGCGGCGCCAAGAAGGAGGAGGCCGTGTGCCAAAG
CTGCCACGTCGCGTGGTCGGCGTGGCTGTCCCGCCTCGGCCGGTGCCTCCTCGCCTCCACGCTCCACCCGTGTCACGCCG
CGCTCGGCCTCTCCCCGCCG---GCGCCCTGCTTCGCCTCCTCCCCCGCCGTCGTCCGGGGCACGCTCTTCCTCCCGTCA
ACCGGCGACCGCCGCGTCCGCCTCTTCCTGCACGAGCACGCGGCGGCGGCGCCCGCGGAGTCCGCCGCGCCCGCGCCGAT
CCTGGTCCTCGACCTGCCGGCCGGCCTCGTGGGCGCGGACATCGCCGCCGCCGGCAGGATCGTGCTCGAGTGCCAGCGGG
AGTGGGCCGGCAGCGGAGGCGCTCTCCTGGAGTCGCCGAAGTGGCAGGTGTACTGCAACGGCAGCCGCGTGGGGTTCGCG
GCGAGGCGGGAGACGATGTCGGACGGGGAGGGGTGGGCGATGGACAAGCTCTGGGCCGTGACTGCCGGCGCGGGGCGGCT
TCCCGGCGGAGGGGTGGAGTACCTGCGGGGCCAGTTTGAGAGGATCGTCGGGTCGGCCGATGCGGAGTCGTTCCACCTCG
TGGAGCCGCTGGGGTGGCTGGGAGTTCACGGCGACGGCGGCCTTAGCGTCTTCTTCCATCGGATTTGATGGAAAATTACA
TTGAACTC-------------------------------TTGCATATACAAGACGAGGTGCCAATTGGCTACTTATCATC
AAACTCTTCACAAATCAGTGGATGAAAACTTTTTTTTTCTTCTTTGTGCTCCACAGCTATCAGAAGCAGTAAGTTAGGAG
CATTCATGGTGGTGCACTGTGTGACAAATACAGTATTCTTTTCTTCTTTCCAAAACGGAATTACCCATGCACCCAAGTGC
ATATATCCATTAAACTGTACTCCCTCGATCCTTTTTGTGTATACAAAATAGTCT---------TATCGTAAGTTCAGATT
GTTTAAGTTTGACCAAATTCATGGAAAACAAATCATCACCTACCAAATCAGTACAGCTAATTCTATCAAGAATTAATAAT
TATGTTTTCATAATGCATTTGTTACGTAATTGTATATGTTGGTATTTTTTTTCTTTTAATGAGTTGGTTAATCCTAAAAT
AGTTTGACTTGACACAAGACCAA-TGTTGCATTTGGGATTGTGGTGAATTATCATAA-----------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------SS-------S---------
-----------------------------------------SS--------------S-------------S--------
-------------SS-------------------------------------S-------S----S--------------
----S---------------------------------------------------------------------------
-----------------------S-S-----------------------------------------------S------
----------------------------------------------------------------S---------------
-------------------------------------------------------S---SSS------------------
---------------------------------S--------------------S-------------------------
-S---------S--------------------------------------------------------------------
-------------------------------------------SSSSS------------------------SSSSSSSS
---------------------------S------------------------------------------------S---
-------------------S------------------------------------------------------------
------------------------------------------------S----S--------------------------
--------------------------------------------------------------S----S----S-------
--------------------S-----------------------------------------------------------
---------------S---S------------------------S----------------------------S------
--S----------------------------------------------------------S------------------
------------------------------S-------------------------------------------------
-------------------------S---------------------S---------------------S---S------
S------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------------------------S--
---------------------------S----------------------------------------S-----------
------------------------S------------S--SSS------------------S------------------
---------S--------------------------------------SSSSS-SSSSSSSSS----S------------
-----S---S-----------------------S---------------------S------S--------S--------
-S------------------S-S-S----------S--------------S-S--S-----------S---S--------
-----------------------S-----S------S-------S------------SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_221
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-----------------------------------------TCCTCCCCTCAACACTCCAT-------------------
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>reverse_1485
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--------------------------------------------ATGGTGTACTGCAACGGCA-----------------
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>forward_222
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------------------------------------------CCTCCCCTCAACACTCCATG------------------
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>reverse_1631
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------------------------------GCAGTTTGAGAGGATCGTCG------------------------------
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>forward_223
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-------------------------------------------CTCCCCTCAACACTCCATGG-----------------
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>reverse_1777
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----------------ACAAGACGAGGTGCCAATTT--------------------------------------------
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