>input_sequence_71571
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----------------------------------------ATGGTTGGCTGCCTCGCCATGTGTACGAATTCCATATTGG
CAGAGTCCTTCATGGGTGCACATTTGACAGGTACATGCACCGGTGCTTTAGCGGCTGGTGTGGTCTGGCATATACGTACA
ATGTTAAAGCATTTTATAGGATCGTCTTTCTTTCTAAAATTATTAGTTTCCTTTCGAGTTCGAGGGTCAAAAGATTTAGT
TATTGCTGTAATGTTCCTGCCAAATTCAATCTTTTAATCTCTTGACTCGGTAAGATAATTTATTATGTGTTTTCCTTATC
TGCAACATTAACATGGCACCCTTTGCCGCCATCATACTGACTCTGCACACATGACTCGATCTTGTCTGTGCCGATTATCA
TCCTAGACTCAAGGGTGCTTGCCTTTGGCCTCAACTTGTCCATCTTCCACGTGATCCAATCAACCACCGCAGTGAACTTG
AATGTTGCTGGCAACCATAAAGTAAGACCGACCATTCTGGACTATGTTTTCTACCCTCTACGTTTCTCCTCTATTTCTTT
CTAAAAACTGATCCTCGCCGCTGCAGGTTGCTGTTGCGGTATCCGTCTCATGGTTGACCTTCCGGAAACCCAATGAATGC
AATTTGGTGCGCAATCATGCTCGTCGGCTGTACTT------------------------TCTCCCAACAGCCCCCGAGGA
GCCAAGGAACGAAACCTTGGCCACTTCCCATAGTTAG-------------------------------------------
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>chr2D_1_TraesCS2D01G579200
TTGGTAGTTGGTACCCTTCCAAGAATAGCACATCCATTGGATTAGGTCCTGTGCCGCACATTCGTGGCTCTAGTGATTCA
ACGTGTTCCGCTGTGATTTAGCAATAGTGCCCTTCAGTCTTGTAAGTCCTTGCCTTGGTAAGATGATTCATTATGTGTTA
TCTTATTCTGCAGCATTATTTGACAGTGTACTATATGTCACCCTTTGCCACCATGACACTAGCTCTACCAGCAATATTGC
TCGAAGGAGGCGTTGTAATCAACTTGTTCTACACTCACGACCCCATCTTTTCTATGCTGATTATCATCCTCGGCTCAGGG
GTGCTCAACTTCTCCATCTTCGACGTGATCTGTTCAACCACAGGGTGCCCTTCAATGTTACTGGCAATCTTCAAGTAAGA
TCATCCTGGACTATGTTTCCTTCTCTCCAACTTTGACTTGGTTTACTCTGGATGAACCATATGTGATGACAATAATGACC
ACCACTACATGCTTCTGTTTATGTTATCGTTTGTGATAAACTCCTTTTTGGAGTGGAGAGTAATGTGTTTGATGACATAG
CGTTAACCCTATTTTCTGCGGAAGCTGAATTCCAAGTTTCCCCAGATGGTGTCTAGTGTCAACTTCATACGATCTTCCAT
CAGAGCTTACGGTGCAATCTGCATGGTCAAAGCGAAGCCATTGATCAAGTCGAGTCCAAGGACCATTGGAAGAGGATTTC
CCCCATGCCATTTGGCGTTCTACAAGAACATTGTGCTCGGAAATGACACTCCGGCCTCCTTCACTCCTGCAACCACATGT
ACCATGGCATCATCGTGCGCTTCTTACTACCACATGTTTCCTGTAAAAAATAAGTAGTAGAGTTGTGGTGTTGCTGCCTA
TAACATCTTTTCTGATTCAGTGTGATGCACTTGTTCTGCAGTGGTTAGTTTGGAGTAAGCATTTTGAGTGGTGGGATACT
GACAGTGCTTAGTTTCAACAGTTTTGGTTTCTGTTCTACCATGGTTGGCTGCCTCGCCATGTGTACGAATTCCATATTGG
CAGAGTCCTTCATGGGTGCACATTTGACAGGTACATGCACCGGTGCTTTAGCGGCTGGTGTGGTCTGGCATATACGTACA
ATGTTAAAGCATTTTATAGGATCGTCTTTCTTTCTAAAATTATTAGTTTCCTTTCGAGTTCGAGGGTCAAAAGATTTAGT
TATTGCTGTAATGTTCCTGCCAAATTCAATCTTTTAATCTCTTGACTCGGTAAGATAATTTATTATGTGTTTTCCTTATC
TGCAACATTAACATGGCACCCTTTGCCGCCATCATACTGACTCTGCACACATGACTCGATCTTGTCTGTGCCGATTATCA
TCCTAGACTCAAGGGTGCTTGCCTTTGGCCTCAACTTGTCCATCTTCCACGTGATCCAATCAACCACCGCAGTGAACTTG
AATGTTGCTGGCAACCATAAAGTAAGACCGACCATTCTGGACTATGTTTTCTACCCTCTACGTTTCTCCTCTATTTCTTT
CTAAAAACTGATCCTCGCCGCTGCAGGTTGCTGTTGCGGTATCCGTCTCATGGTTGACCTTCCGGAAACCCAATGAATGC
AATTTGGTGCGCAATCATGCTCGTCGGCTGTACTT------------------------TCTCCCAACAGCCCCCGAGGA
GCCAAGGAACGAAACCTTGGCCACTTCCCATAGTTAGCTAAACAGGAATGTAAAGTAAACCTAGAATGGCATATACGCTA
TGTGATTTGACTATGCCGGTTTTGAATTGTAAAACAACCTATAACTGAGAGGATCTGTGTATTTTGGACCTCACTTACTC
CAAAAGTCTGTGTAGACTTGGTAGAAATTAACAAGTGACACTCATTGTATGTACACTGCTTGGAAAATACAGTAGCTAAA
AAGAAGTCAGAGGATGAGCTGGATAACAGAACTGCGAGAGAAGTTCATCAGTGAA-CAGAGCATGCCTGCCTCGGCTTTG
TCCTGGTTGAGAGATTTTTTATTTTTATTTTTGCCCCACTGTTGTTTGGGCACTTTGGTTGTGTGGATTTGGTAGAGGAT
GCTGCCTTCACCACCTGTGGCGGCGCGATGGTCATTACATTAGGTGGGTGGCGCGGAT----AGGTCACGACCTGACAAG
CA---CAGACATCGAGTGATGTTATTTCCATTGATCTATGGAACAATGGGCTTGTTACTAATAAATAACTAGTAGAATGC
TCGTGCGTTATTACGGGCTCATAACATGATCATGACGTAAGAATTTAATAAAGGTAGAATGAAATGGTTGATTTTAATAA
CAGGCTCAGAAAAGAGGATGATATCTTGATTAATACTTTTCTTTGGTTTATGGTGCATATAAGATATCAGTGCGTTGCTA
TGGGTTTAAGCAATATTTAAAAAGTGATGGCGTGTGACTGATTGTCCTCGGTCTTCACCATCGTCTTTGAAGGCGCGGTG
AGAGCTTTCGATCGTCAACCCTTGGTCGTCCTCGAGCGAATGATCATCAATCTTGTCCTATTGTGTCTATTGTCCTTTCC
CGCGACCGCCCATGTCGCGAGCGTGTTGTGGCCATTGTCCATGTTGGCAAGCGTTGGTCGGCCATTTCGTTGAGAGCCTG
--------------------CTGCGGCTAAAAAAACTAACTTATATGTACAAACATTGACCAAAACAACTGTATAATTCA
CAAGCATCGGCGTAGCATGCGGCTT
>chr2D_1
TTGGTAGTTGGTACCCTTCCAAGAATAGCACATCCATTGGATTAGGTCCTGTGCCGCACATTCGTGGCTCTAGTGATTCA
ACGTGTTCCGCTGTGATTTAGCAATAGTGCCCTTTAGTCTTGTAAGTCCTTGCCTTGGTAAGATGATTCATTATGTGTTA
TCTTATTCTGCAGCATTATTTAACAGTGTACTATATGTCACCCTTTGCCACCATGATACTAGCTCTACCAGCAATATTGC
TCGAAGGAGGCGTTGTAATCAACTTGTTCTACACTCACGACCCCATCTTTTCTATGCTGATTATCATCCTCGGCTCAGGG
GTGCTCAACTTCTCCATCTTCGACGTGATCTGTTCAACCACAGGGTGCCCTTCAATGTTACTGGCAATCTTCAAGTAAGA
TCATCCTGGACTATGTTTCCTTCTCTCCAACTTTGACTTGGTTTACTCTAGATGAACCATATGTGATGACAATAATGACC
ACCACTACATGCTTCTGTTTATGTTATCGTTTGTGATAAACTCCTTTTTGGAGTGGAGAGTAATGTGTTTGATGACATAG
CGTTAACCCTATTTTCTGCAGAAGCTGAATTCCAAGTTTCCCCAGATGGTGTCTTGTGTCAACTTCATACGATCTTCCAT
CAGAGCTTACGGTGCAATCTGCATGGTCAAGGCGAAGCCATTGATCAAGTCGAGTCCAAGGACCATTGGAAGAGGATTTC
CCCCATGCCATTTGGCGTTCTACAAGAACATTGTGCTCGGAAATGACACTCCGGCCTCCTTCACTCCTGCAACCACATGT
ACCATGGCATCATCGTGTGCTTCTTACTACCACATGTTTCCTGTAAAAAATAAGTAGTAGAGTTGTGATGTTGCTGCCTA
TAACATCTTTTCTGATTCAGTGTGATGCACTTGTTCTGCAGTGGTTAGTTTGGAGCAAGCATTTTGAGTGGTGGGATACT
GACAGTGCTTAGTTTCAACAATTTTGGTTTCTGTTCT-------------------------------------------
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-------AGCATTTTATAGGATCGTCTTTCTTTCTAAAATTATTAGTTTCATTTCGAGTTCGAGGGTCAAAAGATTTAGT
TATTGCTGTAATGTTACTGCCAAATTCAATCTTTTAATCTCTTGACTCGGTAAGATAATTTATTATGTGTTTTCCTTATC
TGCAACATTAACATGGCACCCTTTGCCGCCATCATACTGACTCTGCACACATGACTCGATCTTGTCTGTGCCGATTATCA
TCCTAGACTCAGGGGTGCTTGCCTTTGGCCTCAACTTGTCCATCTTCCACGTGATCCAATCAACCACCGCAGTGAACTTG
AATGTTGCTGGCAACCATAAAGTAAGACCGACCATTCTGGACTATGTTTTCTGCCCTCTACGTTTCTCCTCTATTTCTTT
CTAAAAACCGATCCTCGCCGCTGCAGGTTGCTGTTGCGGTATCGGTCTCATGGTTGACCTTCCGGAAACCCAATGAATGC
AATTTGGTGCGCAATCATGCTCATCGGCTGTACTT------------------------TCTCCCAACAGCCCCCGAGGA
GCCAAGGAAGAAAACCTTGGCCACTTCCCATAGTTAGCTAAACAGGAATGTAAAGTAAACCTAGAATGGCATATACGCTA
TGTGATTTGACTATGCCGGTTTTGAATTGTACAACAACCTATAACTGAGAGGATCCATGTATTTTGGACCTCACTTACTC
CAAAAGTCTGTGCAGACTTGGTAGAAATTAATAAGTGACACTCATTGTATGTACACTGCTTGGAAAATATAGTAGCTAAA
AAGAAGTCAGAGGATGAGCTGGATAACAGAACTGCAAGAGAAGTTCATCAGTG-A-CAGAGCATGCCTGCCTTGGCTTTG
TCCTGGTTGAGAGATTTTTTATTTTTATTTTTGCCCCACTGTTGTTTGGGCGCTTTGGTTTTGTGGATTTGGTAGAGGAT
GCTGCCTTCACCACCTGTGGCGGCGCGATGGTCATTACATTAGGTGGGTGGCGCAAAT----AGGTCACGACCTGACAAG
CA---CAGACATCGAGTGATGTTATTTCCATTGATCTATGGAACAATGGGCTTGTTACTAATAAATAACTAGTAGAATGC
CCGTGCGTTGTTACAGGCTCATAACATGATCATGACGTTAGAATTTAATAAAG-TAGAATGAAATGGTTGATTTTAATAA
TAGGCTCAGAAAAGAGGATGATATCTTGATTAATACTTTTCTTTGGTTTATGGTGCATATAAGATATCAGTACGTTGCTA
TGGGTTTAAGAAATATTTAAAAAGTGATGGCGTGTGACTGATTGTCCTCAGTCTTCACCATCGTCTTTGAAGGCGCGGTG
AGAGCTTTCGATCGTCAACGCTTGGTCATCCTCGAGCGAATGATCATCAATCTTGTCCTATTGTGTCTATTGTCCTTTCC
CGCGACCGCCCATGTCGCGAGTGTGTTGTGGCCATTGTCCATGTTGGCAAGCATTGGTCGGCCATTTCGTTGAGAGCCTG
GCCATTTCGTTGAGAGCCTGCTGCGGCTAAAAAAACTAACTTATATGTACAGACATTGACCAAAACAACTGTATAATTCA
CAAGCATCGGCGTAGCATGCGG---
>chr2D_1560
TAACCG--------------------------------------------------------------------------
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-----------------------------------------------TCTTGGTTGACCTTCCGGAACCCAG-TGAATGC
AATTTGGTGCGCAATCATGCTCGTCGGCTGTACTTTCTATGGGTATGTGAGGCATCTCATCTCCCAATAGCCCCCGAGGA
GCCATGGAACGAAACCTTGGCCACTTCCCATAGTTAGCTAAGCAGGAATGTAAAGTAAACCTAGAATGGCATATACGCTA
TGTGATTTGACTATGCCTGTTTTGAATTGTACAACAACCTATAACTGAGAGGATCCGTGTATTTTGGACCTCACTTACTC
CAAAAGTCTGTGCAGACTTGGTAGAAATTAACAAGTGACACTCATTGTATGTACACTGCTTGGAAAATACAGTAGCTAAA
AAGAAGTCAGAGGATGAGCTGGATAACAGAACTGCGAGAGAAGTTCATCAGTG-AACAGAGCATGCCTGCCTCGGCTTTG
TCCTGGTTGAGAGATTTTTACTTTTTATTTTTGCCCCACTGTTGTTTGGGCACTTTGGTTGTGTGGATTTGGTAGAGGAT
GCTGCCTTCACCACCTGTGGCGGCGCGATGGTCCGT-CATTAGGTGGGTAGTGCGGATGGACAGGTCACGACCTGACAAG
CAGCACGGACATTGAGTGATGTT---------------------------------------------------------
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>chr2D_1560
TAACCG--------------------------------------------------------------------------
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-----------------------------------------------TCTTGGTTGACCTTCCGGAACCCAG-TGAATGC
AATTTGGTGCGCAATCATGCTCGTCGGCTGTACTTTCTATGGGTATGTGAGGCATCTCATCTCCCAACAGCCCCCGAGGA
GCCATGGAACGAAACCTTGGCCACTTCCCATAGTTAGCTAAGCAGGAATGTAAAGTAAACCTAGAATGGCATATACGCTA
TGTGATTTGACTATGCCTGTTTTGAATTGTACAACAACCTATAACTGAGAGGATCCGTGTATTTTGGACCTCACTTACTC
CAGAAGTCTGTGCAGACTTGGTAGAAATTAACAAGTGACACTCATTGTATGTACACTGCTTGGAAAATACAGTAGCTAAA
AAGAAGTCAGAGGATGAGCTGGATAACAGAACTGCGAGAGAAGTTCATCAGTG-AACAGAGCATGCCTGCCTCGGCTTTG
TCCTGGTTGAGAGATTTTTATTTTTTATTTTTGCCCCACTGTTGTTTGGGCACTTTGGTTGTGTGGATTTGGTAGAGGAT
GCTGCCTTCACCACCTGTGGCGGCGCGATGGTCCGT-CATTAGGTGGGTAGTGCGGACGTACATGTCACGACCTGACAAG
CAGCACGGACATTGAGTGATGTT---------------------------------------------------------
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>SNPs
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----------------------------------S---------------------------------------------
---------------------S----------------------------------S-----------------------
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-------------------------------------------------S------------------------------
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-------------------S----------------------------------S-------------------------
------------------------------S-------------------------------------------------
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-----------------S-------------------------------------------------S------------
-------------------------------------------------------S------------------------
--------------------S----------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS-------------------------------------------S-----------------------------
---------------S----------------------------------------------------------------
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-----------S--------------------------------------------------------------------
----------------------------------------------------S---------------------------
--------S----------------------------------S------------------------------------
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-------------------------------S-----------------------S------------------------
------------S-------------------------------------------------------------------
-----------------------------------------------------S--------------------------
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S--------S----S-----------------------S--------------S--------------------------
S----------------------------------------------------------------------S--------
----------S--------------------------------------S------------------------------
-------------------S-------S----------------------------------------------------
---------------------S------------------------------S---------------------------
---------------------------------------------------S----------------------------
----------------------SSS
>forward_217
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-------------------------------------TCACCCTTTGCCACCATGAC-----------------------
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>reverse_1043
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--GAGTCCTTCATGGGTGCACA----------------------------------------------------------
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>forward_818
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------------------------------------------------------------------------------GT
ACCATGGCATCATCGTGC--------------------------------------------------------------
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>reverse_2582
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---------------------CGTGTTGTGGCCATTGTCC----------------------------------------
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