>input_sequence_71565
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--------------------------------------CTTCTCTTCAAACTCCTATTGACACACAAACACATACACACG
CAGAAAAAGATCGAACACCATGAGCTGCAGAAGAAGGATCAGCAGTGCAGTCCTTGTGGTTGTCTTGCTCTTCTCCCCAT
TATTGCTCACGCTCTACCTTCCCACTGCTTGCGCTCGCCATGGTGAGTTCCCTG--------------------------
---------------CTACTGTCTCCACCGATCGACCTATCTCTATCTGTATTATTGTATATATTTCCCCTGTTTATTGG
TTTTGAGATTTGCATCCACCCCTTGTTAAATCGTGGCACTACTATCTCTGCAGTGGCGGTGCTCGGCGCAAGAGATGGCC
TGAATCTCGGAGGCGGCCGGCAGCTTGTGGTTGGTGATGATGCAGGAAAGGCCGTCCCTGTCGGCGGCTCACGGCCAGTT
AGGACGGTGGAGATGCGCGCGGCGAGGAGGCACCGGCGGGACGCGGCCGACGAGATGCACGACATGCTGAGGAAGGACTA
CGCGTATAGGGCGAGGGGCAAGAAGCCCATCCACAACGACGAGCCACTCGACGATGAACCCTAAATCAGACCCGTAGCTA
GGTACATAGTTATAGAAACTTAGCTAGCTAGAGCCGCTCTGTGATTTACTACCACTGCTAGTTAGCTAGATTTGCAGGCT
TTGCCGGATACATACATATAGCTTAGGTACCCAAATATTATGGAACAATAAT----------------------------
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>chr2A_1_TraesCS2A01G334800
CAAAAGCCACCCACCTCCCCGCGCCTGGTTGGGCAGCACGCCCTCGTGCTCCAGCCACTGCTGCCCCTGCCAAACCTGAG
GCGGAGGAGAAAAGAAGAGCGGCCTCGTGGCACGGTGGCAGCATCCATCGACCAGGTCGATCGGTAACTTTAGGTGAAAA
TTACTATAGAA---------------------------------CTAGTTAAGAGAAAGATG------------------
------------CGAATCGGCGTGAGGGGTCAAATTTTGATCTCAGTCCTACACACCACAAGGGTT--------------
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------------------------------------------------GGCCAATTTTATGGGACGACTTCAGAATTCAG
ATGGCTATGTAATTTGCAGCATCTATCGTGAATTTGTGTTCCTGACGATGATCGTGTACTCGAGCTGGCCTGGGAAAAGA
AAGGTGTACATACGGTCCCAAATAGATCGACTCTCACCAAGATTCGAAGCACTAAAAACTACTGCGCCACTTGGCCACGA
CGCAGAAAAAGTACAGCGACGCTGTACTTGAAACTAGTATATTACAGTTATTACTTGATGATTTTACTGCGCCGGGGGTG
ATAATGTGTCGTCGACGACCAGGGGCCAAGAAGAACCCGGCGTCGGCGTGCATGCGCATAGCTGGATCTGCAAGACATCA
ACACAAAAATGGGTAGTAGACTTTTTGCCCTTGCCCTAGCCTTGTGGAGTAGTAGTAG--------CTAGGCACACATAT
ATTCAAATACAAACTTTCAAACAAAAG---CTATTAACATACGGCGCTTACACACGGCTCAGTACAGAGTGAGATTAATT
AGGTCTTG--TGCTCTTGGATGCTTTGGGTTGATAC-----ACACTTACCAGGCACAACCAGGATCGTAGCATTAAACAA
GTCCTGCTCCTCTGCCTGGGGGTTCGTTAAACAAGACTATCAGGGTGGTACGGTCAGAACAGATGTTCTCTAGGTATCCA
TCCTCAGCTAGCTTTGACTGCATATCTATCCCTAGACCCCATACT------------AGC--CTAAAACACTGGCCATTG
CTTTCCCTATAAA-TCTCAACAAACCCCAACCCTGTACCTTCTCTTCAAACTCCTATTGACACACAAACACATACACACG
CAGAAAAAGATCGAACACCATGAGCTGCAGAAGAAGGATCAGCAGTGCAGTCCTTGTGGTTGTCTTGCTCTTCTCCCCAT
TATTGCTCACGCTCTACCTTCCCACTGCTTGCGCTCGCCATGGTGAGTTCCCTG--------------------------
---------------CTACTGTCTCCACCGATCGACCTATCTCTATCTGTATTATTGTATATATTTCCCCTGTTTATTGG
TTTTGAGATTTGCATCCACCCCTTGTTAAATCGTGGCACTACTATCTCTGCAGTGGCGGTGCTCGGCGCAAGAGATGGCC
TGAATCTCGGAGGCGGCCGGCAGCTTGTGGTTGGTGATGATGCAGGAAAGGCCGTCCCTGTCGGCGGCTCACGGCCAGTT
AGGACGGTGGAGATGCGCGCGGCGAGGAGGCACCGGCGGGACGCGGCCGACGAGATGCACGACATGCTGAGGAAGGACTA
CGCGTATAGGGCGAGGGGCAAGAAGCCCATCCACAACGACGAGCCACTCGACGATGAACCCTAAATCAGACCCGTAGCTA
GGTACATAGTTATAGAAACTTAGCTAGCTAGAGCCGCTCTGTGATTTACTACCACTGCTAGTTAGCTAGATTTGCAGGCT
TTGCCGGATACATACATATAGCTTAGGTACCCAAATATTATGGAACAATAATGCCTGGGTTGGCTAGGTAGTTTATTATT
AGCTGGTCAACCTTAATCTAGCATCCAAGCTGGCCATCACGTTTAGTCCTGATTTGCAAGAACAACTGGTAGGAGTAGTT
CATGCGAAGAAGGGGCAGTTTTGTGCCTGATGTGCACGCTTGGGGGCTATGCTAACCTTGTACTATATGTATGTCAGTGT
TACATTTGGCAATTTACATGTGTCCTGGTCCTGGCTGCGTGGATTTTAGCAACAAAGTGTGTGTCAACATCCTCAGCTTA
TTTTGCTGCTTGTTGACATACGGGTCATTGGAAAAAGAACCACTTTCTCGTGAATTTAATAGCTTTCGCTCTTGTTCTGT
TTTCTCCTTCTGATAGAATGGGCAATGCTCACATCATGGTTCATGTATGTATAAGAAGAT--GCTCGCCTACCGCGTGAA
GCTAATTTCTTTTGGGCAAACTAAGCCCTCGAGGTGGGCTAGATTTTAC-TAACTTAATATCCCAAACAGTTAACAGTGT
ACCGATAAAAGTTTTCCCAAAGGAAAAGGAATGGCTTCATAGGCCATTCTGAGATTACATCTGGAGGTTTTACTGCACAA
GAAAGAGCAACAAGAGGAAGATCTACACAAGGAAACCTTTTTGGCCAGAGAATGGGCAATAAGATTCTTGATCCTAGGAA
TATGGGTGGTCAATCGAGAAGTTTTTGGGAAGACACCTGGTTGGGTGACAC--TATTAACTCTACGATACCAGATTATAT
ATTATCGTATTTATAAAAGAGG--TCGGTGGCTTCTGTTCTTGAGGCTAGCCATTTGAACATCCAATTCCGCATGTCTTT
GTTGGGTGACAAATGGACTAAGTGGATCCATTCGGTTTCTAAGTTGATATCAATTAATCTGACTCTGATGCCAGATTCAT
TCCAGTGAAGGTTAACCACTAATGGTGCATTTACTGTGAAGTCTATCTATGCGGATCTGATGGATTCCAGACATATTTTT
CGCAAAAACATATTTGGAA
>chr2B_1
CAAAAGCCACCCACCGCTCCGCGCCTGGTTGGGCAGCACGCCCTCGTGCTCCAGCCACTGCTGCCCCTGCCAAACCTGAG
GCGGAGGAGAAAAGAAGAGCGGCCTCGTGGCACTGTGGCAGCATCTGTCCACCGGGTCGATCGGTAACTTTAGGTGAAAA
TTACTACTCATGCACATTTTAAATCTAGCTAAGAGAATTACTCCCTAGTTAAGAGAAAGATCGAATTACCCCGCAAAAAA
GAAGAGAAAGATCGAATCGGCGTGAGGGGTCAAATTTTGATCTCAGTCCTACACATGCACATACGGCTT-----------
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---AATGAAGAATCGCCTTAACTTGTGCACCTGCGCACCACAACGACCGGCCAATTTTATGGGACGGCTTCAGAATTCAG
ATCGATATGTAACTTGCAGCATATATCCTGAACTTGTGTTCCTGACGATGATCGTGTACCCGAGCTTGCCAGGAAAAAGA
AAGGTGCTAC-ACGGGCCCAAATAGATCGACTCTCACCAAGATTCGAAGCACTAAAAACTACTGTGCCACTTGGCCACGA
CGCAGAAAAAGTACAG-GACGGTGTACTTGAAACTAGTATATTACA-TTATTACTTAATGATTTTACTGCGCCGGGGTTG
ATAATGTGTCGTCGACGACCAGGGGCCAAGAAGAACCCGGCGTCGGCGTGCATGCGCATTGCTGGATTTGCAAGACATCA
ACACAAAAAAGGGTAGACTTT---------TTGCCCTAGCCTTGTGGAGTAGTAGTAG--------CTAGGCACACGTAT
ATTCAAATACGAACTTTAAAGCAAAAA---ATATTAATATACGGCGCTTACACACGGCTCAGCGAAGAGTGAGATTAGCC
CTTGTGCTCTTGCTCTTGGATGCTTTGGGTTGATAGAGTATACACTTACCAGGCACAACCAGGATCATACCATTAAACAA
GTCCTGCTCCG--GCCTAGGGGTTCGTTAAACAAGACTATCAGGGTGGTACGGTCAGAACAGATGTTCTCTAGGTATCCA
TCCTCAGCTAGCTTTGACTGCATATCTATCCCTGGACCCCATACT------------AGCAACTAAAACACTGGCCATTG
CTTTCCCTATAAAATCTCAACAAACCTCAACCCTGTACCTTCTCTTC-AACTCCTATTGACACACAAACACA--------
CAGGAAAAGATCGAACACCATGAGCCGC---AGAAGGATGAGCAGTGCAGTCCTTGTGGTTGCCTTGCTCTTCTCCCCAT
TATTGCTCACGCTCTACCTTCCCGCTGCTTGCGCTCGCCACGGTGAGTTCCC-G--------------------------
---------------CTACTGTCTCCACCGATCGACACATCTCTATCTGTATTGCTGTATATATTTCCCCTGTTTGTTGG
TTTTGAGATTTGCATCCACCCCTTGTTAAATCGTGGCACCACTATCTCTGCAGTGGCGGTGCTCGGGGCAAAAGATGGCC
TGAATCTCGGAGGCAGCCGGCAGCATGTGGTTGGTGATGACGCAGGAAAGGCTGTCCCTGTCGGCGGCTCACGGCCAGTT
AGGACGGTGGAGATGCGCGCGGCGAGGAGGCACCGGCGGGACGCGGCCGACGAGATGCACGACATGCTGAGGAAGGACTA
CTCGTATAGGGCGAGGGGCAAAAAGCCCATCCACAACGACGAGCCACTCGAGGATGAACCCTAAATCAGACCCGTAGCTA
GGTACATAGTTATAGAAACTTAGCTAGCTAGAGCCGCTCTCTGATTTACTACTACTGCTAGTTAGATAGATTTGCAGGCT
T-GCAGG----ATACATATAGCTTAGGTACCCAAATATTATGGAACAATAATGCCTGGGTTGGCTAGGTAGTTTATTATT
AGCTGGTCAACCTTAATATAGCATCCAAGCTGGCCATCACGTTTAGTCCTGATTTGCAAGAACTACTGGTAGGAGAAGTT
CATGCGAAGAAGGGGCAGTTTTGTGCCTGATGTGCACGCTTGGGGGCTATGCTAACCTTGTACTATATGTATGTCAGTGT
TACGTTTGGCAATTTACATG-----------TGGCTGTGTGGATTTTAGCAAGAAAGTGTGTGTGGACATCCTCAGCTTA
TTTTGCTGCTTGTTGACATACGGGTCATGGGAAAAAGAACCACTTTCTGGTGAATTTAATAGCTTTCACTCTTGTTCTGT
TTTCTCCTTCTGATAGAATGGGCAATGCTCACATCATAGTTCATGTATGTATAAGAAGATATGCTCGCCTACCGTGTGAA
GCTAATTTCTTTTGGGCAAACTAAGCCCTCGAGGTGGGCTAGATTTTTATTAACTTAATATCCAAAACAGTTAACAGTGT
ACTGATAAAAGTTTTCCCAAAGTAAAAGGAATGGCTTCATAGGCCATTCTGAGATTACATCTGGAGGTTTTACTGCACAA
GAAAGAGCAACAAGAGGAAGATCGACGCAAGGAAGCCTTTTTGGCCAGAGAATGGGCAATAAGATTCTTGATCCTAGGAA
TATGGGTGGCCAATCGACAAGTTTTGGGGAAGATACCTGGTTGGGTGACAC--TATTAGCTCTACGATACCCGATTATAT
ATTATCATGTTTATAAAAGAGGATTCGGTGGCTTCTGTTCTTGAGGCTAGCCATTTGAACATCCAATTCCGCATGGCTTT
GTTGGGTGACAAATGGACTAAGTGGATCCATTCGGTTTCTAAGTTGATATCAATTAATCTGACTCAGATGCCAGATTCAT
TCCAGTGGAGGTTAACCACTAATGGTGCATTTACTGTGAAGTCCATGTATGCGGATCTGATGGATTCCAGACATATTTTT
CGCAAAAACATATTTGGAA
>chr2D_1
CAAAAGCCACCCACCGCTCCGCGCCTGGTTGGGCAGCACGCCCTCGTGCTCCAGCCACTGCTGCACCTGCCAGACCTGAG
GCGGAGGAGAAAAGAAGAGCGGCCTCGTGGCACGGTGGCAGCATCCATCGACCAGGTCGATCGGTAACTTTAGGTGAAAG
TTACTATAGAATTACTAGTTAATACTACT------------------------AGAAAGATA------------------
------------CGAATCGGCGTGAGGGATCAAATTTTGATCTCAGTCCTACACATACTCCATCCGTCCTTTGAAGAGTG
TACTTTCAACTTTGTTAGAAGGTCAAACATTTTTATGTTTGACCGTATTTATACAATAATACATCAATATTTATGCCATC
AAACTAGGAACATTAGATTCATGATAAAATATATTTTTATCATATACCTTTTGGTTTCATAAATATTGATAATTTTTACA
CAAACTCGGTCAAACTTTAAGATACTTTGACGCTCCAACAAAGTTGGAAGTACATTCTTTAAAGGACGGAGGGAGTATGG
CTGAATGCAGAATCACCTTAACTTGGGCACCTGCACATCACAACGGCCGACCAATTTTATGGGACGACTTCAGAATTCAG
ATCGA-----------------ATATCCTGAACTTGTGTTCCTGACGATGATCGTGTACCCGAGCTTGCCAGGAAAAAGA
GAGGTGGTAC-ACGGTCCCAAATAGATCGACTCTCACCAAGATTCGAAGCACTAAAAACTACTGCGCCACTTGGCCACAA
CGCAGAAAAAGTACAGCGACAGTGTACTTGAAACTAGTATATTACA-TTATTACTTAATGATTTTACTGAG-CGGGGGTG
ATAATGTGTCGTCGACGACCAGGAGCCAAGAAGAACCCGGCGTCGGCGCGTATGCGCATAGCTGGATTTGCAAGACATCA
ACACAAAAAGGGGTAGACTTT---------TTGCCCTAGCCTTGTGGAGTAGTAGTAGGCTAGTAGCTAGGCACACATAT
ATTCAAATACAAACTTTCAAACAAAAAAATATATTAATATACGGCGCTTACACACGGCTCAGCGAAGAGTGAGATTAGCT
CTTGTGCTCTTACTCTTGGATGCTTTGGGTTGAT--AGTATAGACTTACCAGGCACAACCAGGATCATACCATTAAACAA
GTCCTGCTCCG--GCCTGGGGGTTCGTTAAACAAGACTATGAGGGTGGTACGGTCAGAACAGATGTTCTCTAGGTATCCA
TCCTCAGCTAGCTTTGACTGCGTATCTATCCCTAGACCCCATGCTAGCAAGCAAGCCAGC--CTAAAACACTGGCCTTTG
CTTTCCCTATAAAATCTCAACAAACCCCAACCCTGTACCTTCTCTTC-AGCTCCTATTGACACACAAACACA--------
CAGGAAAAGATCGAACACCATGAGCCGC---AGAAGGATAAGCAGTGCAGTCCTTGTGGTTGCCTTGCTCTTCTCCCCAT
TATTGCTCACGCTCTACCTTCCCACTGCCTGCGCTCGCCATGGTGAGTTCCCTGCTACTGTCTCCACACATCGACGTGTA
TCTCTATCTGTATTACTACTGTCTCCACCGGTCGGCCTATCTCTATCTGTATTACCGTATATATTTCCCCTGTTTGTTGG
TTTTGAGATTTGCATCCACCCCTTGTTAAATCGTGGCACTACTATCTCTGCAGTGGCGGTGCTCGGGGCAAAAGATGACC
TGAATCTCGCCGTCGGCCGGCAGCATGTGGTTGGTGATGATGCAGGAAAGGCCGTCCCTGTCGGCGGCTCACGGCCAGTT
AGGACGGTGGAGATGCGCGCGGCGAGGAGGCACCGGCGGGACGCGGCCGACGAGATGCACGACATGCTGAGGAAGGACTA
CGCGTATAGGGCGAGGGGCAAAAAGCCCATCCACAACGACGAGCCACTCGACGATGAACCCTAAATCAGGCCCGTAGCTA
GGTACATAGTTATAGAAACTCAGCTAGCTAGAGCCGCTCTCTGATTTACTACTACTGCTAGTTAGCTAGATTTGCAGGCT
TTGCAGG----ATACATATAGCTTAGGGACCCAAATATTATGGAACAAGAATGCCTGGGTTGGCTAGGTAGTTTATTATT
AGCTGGTCAACCTTAATCTAGCATCCAAGCTGGCCATCACGTTTAGTCCTGATTTGCAAGAACTACTGGTAGGAGAAGTT
CATGCGAAGAAGGGGCAGTTTTGTGCATGATGTGCACGCTTGGGGGCTATGCTAACCTTGTACTATATGTATGTCAGTGT
TACATTTGGCAATTTACATG-----------TGGCTGTGTGGATTTTAGCAAGAAAGTGTGTGTCAACATCCTCACCTTA
TTTTGCTGCTTGTTGACATACGGGTCATGGGAAAAAGAACCACTTTCTGGTGAATTTAATAGCTTTCACTCTTGTTCTGT
TTTCTCCTTCTGAAAGAATGGGCAATGCTCACATCATAGTTCATGCATGTATAAGAAG--ATGCTCGCCTACCGTGTGAA
GCTAATTTCTTTTGGGCAAACTAAGCCCTCGAGGTGGGCTAGATTTTATAAAGTTAGC-ATCCCAAACAGTTAACAATGT
ACCAATAAAAGTTTTTCCAAAGGAAAAGGAATGGCTTCCTAGGCCATTCTGAGATTACATTTGGAGGTTTTACTGCACAA
GAAAGAGCAACAAGAGGAAGATCTACGCAAGAAAGCCTTTTTGGCCAGAGAATGGGCAATAAGATTCCTGATCCTAGGAA
TATGGGTGGCCAATCG-----TTTTTGGGAAGATACTTGGTTGGGTGACACTCTATTAGCTCTACAATACCCGATTATAT
ATTATCGTGTTTACAAAAGAGGATTCGGTGGCTTCTATTCTTGAGGCTCGCCCTTTAAACATCCAATTCCGCATGGCTTT
GTTGGGTGACAAATGGACTAAGTGGATCCATTCGGTTTCTTAGTTGATATCAATTAATCTGACTCGGATGCCAGGTTCAT
TCCAGTGGAGGTTAACCACTAATGGTGCATTTACTGTGAAGTCTATGTATGCGGATCTGATGGATTCCGGACATATTTTT
CGCAAAAACATATTCGGAA
>SNPs
---------------S-S--------------------------------------------------------------
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-------------------------------------------------------------S------------------
-------------------------------------------------------SSSSS-SSSSS--------------
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--S-S-------S---------S----S----S--------------------------S------S---S--S------
------SSSSS---------------------------------------------------------------------
---------------------S------------------------S---------S-----------------------
-------------------------------------------------------------------S------------
---------S------SSSSSSSSSSSSSS--------------------------------------------------
--------------------------S---S------S------------------------SSS------------SS-
SSSSSSSS---------------------------S------------------------------S--S----------
----------SSS-------------------------------------------------------------------
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-----------------------------------------------S------------------------SSSSSSSS
---S---------------------S--SSS--------S----------------------S-----------------
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------------------------------------------------------S--------------------S----
------------------------------------------------------------------S----S--------
------------------------S-------------------------------------------------------
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---------------------S----------------------------------------------------------
----------------------------------------S-----------S---------------------------
----S--SSSS---------------------------------------------------------------------
---------------------------------------------------------------S-----------S----
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--------------------SSSSSSSSSSS------S--------------S---------------------------
----------------------------S-------------------S------------------S------------
-------------------------------------S------------------------------------S-----
------------------------------------------------S-------------------------------
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--------------------------S-------S---------------------------------------------
---------S-------S---------------S------------------------S------------S--------
--------S------------------------------------------------------------------S----
-----------------------------------------------------------------S--------------
-------S--------------------------------------S---------------------------------
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>forward_1104
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--------------------------------------------CGCTTACACACGGCTCAGTA----------------
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>reverse_2351
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------------------------------CTGGCTGCGTGGATTTTAGC------------------------------
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