>input_sequence_71554
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----------------------------------------------------------------------ATGACACTCG
AAGAAGAGCTCTCCAAGCTGGCTGCCGATGTAGCGGCCATCTCGCCGGCACCGGTGAGGAAGGCCGTGGATGCACTGGCG
CGCAGCAGCCCCGCCCGCGCCGCCGCCGATGCCCTAGTCTACCTCTCCGTGGGCACGACCTGCGCGGTCTTCGCGGCCGC
CTTCTTCACCATCTTCGCGGACCTGGCCTGCGCCCGCGGCTGGGGCTGCACCCCGGCCTATGTCCTGTCCGAGATAGCGG
ACTATCTATCCACACCTGTCCTGCTTCTCCTGCCGCCGGCGCTCGTGCTCTTCTTCCTCCGCGCCGCCGGCTGCAGGACC
AAGGTACGT----GCTCGTCACTCACTCTGCTCCATGGTTCTGCTTCCCGTGATGCTGATGAATTGATTGTGGAATGCGA
TA---GGCGGCGGACGAGGAGAGCCTCATCGTGAAGAATGACGAGGGGGAAACCCTTCTGTCGCCGTCGCCGCTGGCCTT
GGCAATTCTGTGGCTTTTCATTGGGGCGGCGTCGATGGGAGCCATCTCCTTCCTTCTTTTCAAGTGTGGATATACAGAGA
TCTCCGACCTTCTCGGCTACGCGGCTCTCTTGTGCACGTTCATGTGGGAAGCCCTCGTCTATGTCCGCGCTGCAGTGGCG
CTGTGGAGGATGAATCCCGGGCCAAGCAACATGGTGC-------------------------CATCGACTGACTAA----
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>chr7A_1_TraesCS7A01G053200
GATCGGTTAGAAATACCCTAAGCAAGAACAAAAGCTATATACTATATTGCTACCACACACTTTGTGGTGTTGATTTGAAG
TATGAGATCATCATATCACCATTCTAATTCTAGTTCTAATCTTTAGTTCCCTCATGGAGTGCGGCGTTTCTGCTCCCGGG
CTCAAATGAGC---------------------------------------------------------------------
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---------------------------------------CTGGGCAAAATAAATAATCATTAAAGATAGAAAAAAATTCA
AAAAAATCCCGAAATTGTTTTGCAAGCAAGATGCTCATGTGTGCGTGATGTTCATGCAAAAATTGGTGGAGTTTGGACAT
TCGAGGAGCGCACAATTAAAAAGACAAAATTTAGCTATGTGAGTAAGGTTATTGTTCACACACTGTTTGGACCGATTTTC
TCTCTTTTGCCACGAGCTCCTCAAATGTCCAAAGTGATGAAATTTTGCATGGACATCACGCAGGCGAACATCTTCTATAC
AAAATTTTTTAGTTTTTTTTTACATCAAGTTCTCTCGTTTTCCCCTCCACCTTGGTCGCCGTGCGCAACCTAAGATGACT
TACACATCTAGACGAAGGGAGTACTAAAGATAAATACACGCGTCACGGCCACCTTTGGGTATCTCCACAGGTTCAAAGCT
CAAGCAAAAAAGCTATCCATATACCACAACTTTCTTTTTTTCCATCATTAATTATTCCTTGTACTTCCATTTTTACACCT
TAG---TGCCTAGAACTGAAACTCAAGCTAATCATATGGTGGCACAACAAGCAATCCC-------------------CTC
TGTCCGTTTTGCTCATAAGTCAATTAATCTTCGTGAC-ATACTAGAAAGATAAATCGAGGAAAGAACCTCTCTAGGTCGA
TCCG---TTCTCCTATTTGAAAAATATAAGAAAAATCTATACAACATTGCACAAGCAAGAAAAGAAGCTATATACATACT
AG------------------------------------------------------------------------------
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--------------------------------TATAAAAGTCCCCCAAGGCCCTAGGCCATAACACCAGCTAGAACTAG-
----AAGCCACACCGAGTATCACCG---------ACCTGCAGACCACTTTCAC------------TGGCGATGACACTCG
AAGAAGAGCTCTCCAAGCTGGCTGCCGATGTAGCGGCCATCTCGCCGGCACCGGTGAGGAAGGCCGTGGATGCACTGGCG
CGCAGCAGCCCCGCCCGCGCCGCCGCCGATGCCCTAGTCTACCTCTCCGTGGGCACGACCTGCGCGGTCTTCGCGGCCGC
CTTCTTCACCATCTTCGCGGACCTGGCCTGCGCCCGCGGCTGGGGCTGCACCCCGGCCTATGTCCTGTCCGAGATAGCGG
ACTATCTATCCACACCTGTCCTGCTTCTCCTGCCGCCGGCGCTCGTGCTCTTCTTCCTCCGCGCCGCCGGCTGCAGGACC
AAGGTACGT----GCTCGTCACTCACTCTGCTCCATGGTTCTGCTTCCCGTGATGCTGATGAATTGATTGTGGAATGCGA
TA---GGCGGCGGACGAGGAGAGCCTCATCGTGAAGAATGACGAGGGGGAAACCCTTCTGTCGCCGTCGCCGCTGGCCTT
GGCAATTCTGTGGCTTTTCATTGGGGCGGCGTCGATGGGAGCCATCTCCTTCCTTCTTTTCAAGTGTGGATATACAGAGA
TCTCCGACCTTCTCGGCTACGCGGCTCTCTTGTGCACGTTCATGTGGGAAGCCCTCGTCTATGTCCGCGCTGCAGTGGCG
CTGTGGAGGATGAATCCCGGGCCAAGCAACATGGTGC-------------------------CATCGACTGACTAAGGTA
AGTTGCATTAATTAAGCTAAGCCGAACATCAACATCTCGCTTCCTCAAA----AGTATTTTATCGGAACATAGTG-----
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-----------------------------------------------------------------------------TTT
TCTACCAACAAATTGGTACTTC----------------------------------------------------------
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--------------------------------------------------------------------------GAAGAT
GATGCAAGTAATGTTCAAGTCAAATGAGTAGAATGTAGATATCAGTTGGACCTATACATATGCATGTTTGCTATGAAATG
AAAGTATA----ATTGTTGTCATCACGCATCACTCATCACCAAACCACCAATACTAGTCTTACTAAACTGGCGTACAATG
GTAGAGATCAATGGAAGAGCAATAATTTTTCTTCTTGATCTTCTAATTTTTGCAGTTAAAGTTTTATTTTGCCTCAACTT
GAAATTCCATTAACTCAATGGCCAGGTGCACAAGGTTTGGAGCCGGGCGAAGACGATGATCGAGAGTACTATGTACTGCA
GAAGCGCTGCTGTTTATGTTGCTGTTCAGAATAAAGGGATGCACATCAGGACATGCCTGCCGTAGTGTCGTCTGATGTGT
ACTAGTAATCTATCTTTTTGTTTCTTGACTGGGACACTAGTAGTCTATCTAGTATAACTAGTGTGGTGTCAAGCTTGCTT
CAGTTGGTGCTATGGTAGCGCTGATGATGTGACTGAAGCGCTATGGTAGCGTTGATTGGTGGTTACAGTGAACCGGACCT
ATATCTAACACAGGATTTGTGTTGCTGTTATTTAGCAGTACGTGCCCATACATATGACTGAACGTACGATATGATGCAGA
GCCTCCATTCTATGTATGCAATCATAGCATTTTTACCGCCTATAACTTGTCCGCGATTATAAATACTCCCTCCATTCCAC
AATGTAGTGCTTCCTCTATCTCCGTGCTTCAACTTTGACCGTAAATTTAACTACCAAGACCGATTGCGGCGGGAGCAAAA
ATTATATCAGTGAATTCGTATTCGAAAGAAGTTTTCAATTATATAATTTTTCTCCCGCCGCAGTTGGTCTTGTTGGTTAA
ATTTATGGTCAAAGTTGG
>chr4A_49
------------------------------------------------GCTACCACACACTTTGTGCCGTTGATTTGACG
TATGAGAACATCATATCACCATTCTAATTCTAGTTCTAATCTTATTTCCCTCGTGTCACTTTAGTCATCTTCTTCAAATG
GGATTGATGGCTAGGCACGTTCCTACTTTCCACAAACCAGGTGCAACTATTACAGAAGTTAAGACTACTAAAAAAATTAA
TTAGCACCGCACTGCACAAGTTTCTTGGTGTCCTGTATGTTTGCGTCTTAATTACGAACTTGCAATCCTGGCATTTTTTT
AACAAGGAGAAACTATGTCTTAGTGTAGCATTTCTACATCTGGTCAAAATATTGGCATCTTGTTC---------------
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---------------------TACTAAAGATAAATACACTCGTCATGGCCACCTTTCGGTGTCTCCACATGTTCAAAGCT
CAATC-AAAAAGCTATCCATATACTACAACTTTTTTTC---CCATCATTAATTGTTCCTTGTGCTTCCATTTTTACACCA
TAG---TGCCTAGAACTAGAACTCAAGCTAATCACATAGTGGCATGACAAACAATCCT-------------------CTC
TGTTCGT-------------------------------------------------------------------------
---------------TTTGAAAAATATAAGAAAA-TCTACACTACATTGCATAAGCAAGAAAAGAAGCTAT----ATACT
AG------------------------------------------------------------------------------
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--------------------------------TATAAAAGTCCCC-AAGGCCCTAGGTCATAATACAAGCTAGAACTAGA
AGCCAAGCCACACCGAGTATCACCG---------ACCGGACCAC----TTCAC------------TGGCGATGACACTCG
AAGAAGAGCTCTCCAAGCTGGCTGCCGATGTAGCGGCCATCTTGCCGGCACCGGTGAGGAAGGCCGTGGATGCACTGGCG
CGCAGCAGCCCCGCCCGGGCCGCCGCAGATGCCCTAGTCTACCTCTCCGTGGGCACGACCTGCACGATGTTCGCCGCCGC
CTTCCTCACCGCCTTCGCGGGCCTGGCCTGCGCCCGCGGCTGGGGCTGCACTCCGGCCTATGTCCTGTCCGAGATAGTGG
ACTATCTATCCACACCTGTCCTGCTTCTCCTGCCGCCGGCGCTCGTGCTCTTCTTCCTCCGCGCCGCCGGCTGCAGGACC
AAGGTACGT----GCTCGTCACTCACTCTGCTCCGTGGTTCTGCTTCCCGTGATGCTGATGAATTCACTGTGTAATGTGA
TAGGTGGCGGCGGATGCGGAGAGCCTCATCGTGAAGAATGACGAGGAGCTAACCCTTCTGTCGCCGTCGCCGCTGGCCTT
GGCAATTCTTTGGCTTTTCATTGGGTCGGCGTCCATGGGAACCATCTCTTTCATTCTTTTCAAGTGTGGATCTACAGAGA
TCTCCGACCTTCTCGGCTACGCAGCTCTCTTGTGCACGTTCATGTGGGAAGCCCTCGTCTATGTCCGCGCTGCAGTGGCG
CTGTGGAGGATGAATCCCGGGCCAAGCAACATGGTG--------------------------------------------
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>chr7D_659
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----------------------------------------------ATTAATTGTTCCTTGTACTTCCATTTTTACACCT
TATTATTGCCCAGAACTGAAACTCTAGCTAATCACATAGTGGCACGTTAAGTGATTCGCACATCACTAACTCGTTCTCTC
TCTCTCTTTTGCTCATAAGTCCATCATCGACATCACGTATACTAGAAAAAGAAATCAAGGCAAGAACCCTAGATCAATCC
ATGTACTTTGTCCTATCTGAAAAATATGAGAGAA-TCTATACTACATTGCATCAGCAAGAACATAA-CTAT----ATACT
ACACTACTACCTCATACTTTGTCCGGTTGATTTGAAATATGAGAATCTTTTAGATTCCGACAGATAGGATTGATTTTGAA
GATTCACATAGTACTCACTCAAACAGTTATATTCTTGCAGGGGTTAGGAGAATTGTGTGGTAAAATGTAATTAAATCGAT
CATGAGCACTATGAAACATTATAGGATACCTAATGACCATTTATTTCCTTCCTTTAGATGTCCACGTAATTCAATCTTTG
TTTTCAATGACCACCTCTTACTACTGTGCTTTTTTCTCTAGTGCACCACGCTATTGACGAAAACTGAAACCTGTGCCAAA
TTCTTTACTGCTAGGAGGGTATCCTAAAATGGCACAAGCGAGAGATTAGACAACAACGCATTTTTTTTCTTTCTCACTCC
ACAATGCTACTCGACAACAACCACCTATAGGATATAGCACCGTATAATTTGTCCATCATCGTGTCAGCAAAATCTAAAGC
TACTTATTCTAAAAAATACTTAAAAAAGGAAAGTTGATGCATAGAATTGAAGATTAGTCGCTGTAAAATGCATAAGGATG
ACACAGGAAATAGTTGGATTCTTTGAATAATCATGAGAAATTCCTGCTCTAATTTTGATTAGTACGTGCAAGAAAACACT
CGTACGCACGTTTGCCACAGCTTGCAGCTCACTATAAAAGCCCCAAAGGTCCCCAGGCCATAACACCAGCTAGAA-----
------GCCACACCAGGTAAGTCAAAGACCAGACACCAGACCAC----TTCACTCCACGTCCAAATGGCGATGACTCTCG
AAGAAGTGCTCTCCAAGCAGGCTGCCGACCTAGCCGCCATCTCGCCGGCGCCGGTGAGGAAGGCCGTGGATGCACTGGCG
CGCAGCAGCCACGCCCGCGCTGCCGCCGATGCCCTGGTCTACCTCTCTGTGGGCACGACCTGCACGATGTTCGCGGCCGC
CTTCCTCACCATCTTCGCGGACCTGGCCTGCGCCCGCGGCTGGGGCTGCACCCCGGCCTATATCCTGTCCGAGATAGCAG
ACTATCTATCCACACCTGTCCTGCTTCTCCTGCCGCCGGCGCTCGTGCTCTTCTTCCTCCGCGCCGCCGGCTGCAGGACC
AAGGTACGTACGTGCTCATCACTCACTCTGCTCCATGGTTCTGCTTCCCGTGATGCTGATGAATTCACTGTGTAATGTGA
TAGGCGGCGGCGGACGCGGAGAGCCTCATCGTGAAGAATGACGAGGAGCCAACCCTTCTGTCGCCGTCGCCGCTGGCCTT
GGCAATTCTTTGGCTTTTCATTGGGTCGGCATCGATGGGAACCATCTCTTTCCTTCTTTTTAAGTGTGGACATACAGAGA
TCTCCGACCTTCTCGGCTACGCGGCTCTCTTGTGCACGTTCATGTGGGAAGCCCTCGTCTATGTCCGCGCTGCAGTGGCG
CTGTGGAGGATGAATCCCGGGCCAAGCAACATGGTGGCTGCAGAGTAGCCCTTGCGCCGGATCATCGACTTACTAAGGTA
AGTGGCATTAATTAAGCTAAGCCGAACATCAACATCACACTTTCTCAAAATTAAGTATTGTAGCGGAACATCGAGTGCTT
TTGTACCAACAAATTGGTAGAAGATGATGCGAGTATATGTTAAGTCAAGTACAGTAGTACTCCCTCTGTCCCATAATATA
AGAACGTTTTTGACACTATACTAATGTCAAAAACGTTTTTATATTATGGGACGGAGGGAGTAGAATTTATCAGTCGGTTG
GTTCTCCGTGTTTGTTATCAACTGAATGTGTAATTGTTGTCATCAGTTATCACAAAGCTCCAATGCTAATCGAGTGCTTT
TGTACCAACAAATTGGTAGAAGAGGATGCAAGTATATGTTAAGTCAAATACAGTAGTCTAGAATTTATCCGTTGGTTGGT
TCTCCACGTTTGCTATCAACTGAAAGTGTAATTCTTGTCATCAGTTATCAGAAAGGTCCAATGCTACTCTCTTGTAAACT
GCCACGTGTTGGTTGAGATCATACAATAATAATTTTTTTTCTTGATCCTAATTTTTTGCACTTGATCTTTCTCTCGTCTC
AACTTGAAACACTATTGATCCTGATATAATTTCGTCGTTCACCGACCACTAATTCACTCCACACCCAGTTGGTAGAAGAT
GATGCAAGTAATGTTCAAGTCAAGTAGTGGAATG-----TATCAGTTGGTTC--------TGCATGTTTGGTATCAACTG
AAAGTATATATAATTGTTGTCATCAGTCATCACCAAGCACCAATGCTACT---CTTGTAGTACTAAACTGCCACACGATG
GTAGAGATTGATAGGAC-------------------GATCTTATAATTTTT-----------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------SS----------S-
-------S-----------------------------------SSS-S--SSSSSSS-S-SSS-SSS-SS-SS--SSSS-
SSSSSSSSS-----------------------------------------------------------------------
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-------------------------------------------S-------SSSSSSSS--SSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS------------------S-----S----------S---S--------S----------
---S-S------------------S--------S---SSSS------------S--------------------------
----------------------------------S--S-------S-----------S----------------------
---------------------S--S-SSSSSSSSSSS-----------S-S-----S---S-------SSSSSSSSSSSS
SSSS-----S------------------------S-------S--------S-------------------SSSS-----
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---------------------------------------------S----------------------------------
-------------------------------------S-SSS--SSSS--------------------------------
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---------------------------------------------------------------S--S-S-----------
----S---------------------------------------------------------------------------
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-----------------------------------------------------------------S-S----S----S--
----------------S-----------------------------S-SS------------------------------
---------S---------------S--------------S-------S-------------------------------
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------------------------------------S---------------------------------S---------
---S--------------------------------S-S---S----------------S--S--------S-S------
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-S----------------SSSS----------------------------------------------------------
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-----------------------S-SSSSSS-SSSSSSS----------SS-SSSSSSSS----------S---S--S--
-------------------------SS------SS-S------SS-SS-SSSS--S--SS----------S-SS--S---
--------SS--S-S-SSSSSSSSSSSSSSSSSSSS------S--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSS
>forward_691
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-------------------------------CTCTCGTTTTCCCCTCCACC-----------------------------
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>reverse_3740
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-----------------------------------------------------------AGTGTGGTGTCAAGCTTGCT-
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