>input_sequence_71549
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-------------------------------------------------------------------------------A
TGTCGCCCCTGAGCCCCGGCGCCCCCTTTGCTCCGTTGCACGCCGATGGCATCCTCGTCGCTCAAGCCTTTTTCCTCACC
CTGCTGCTTTCAGTTGTTGTTGGTTCGTTTGGCCATCATGGACATGTTGCTGCGGACTCCCAGTACAACTACACCATGGT
GATACGTGAACGACTACTCGGCTATGACAAGTGTACCTCTACATCCTGGAATCGCTAAGTACCGCACCGAAACGCATGTA
CAACAAGGAACCCCGAAGGACTTGGATGCTCCAAGTTCCTCTCCGACACGCGCCAAGTTCCTCTCTGACACGCGCCAAGT
TCCTCTCTGACAAGTGTACGACTACACCCAACGATGCGACAACTACCTCTACCGTCGACCCTCGAAGGCACCATGGACGT
CAAGTTCCTCGCCATGTACCACTACCGTCGACGTGTACGTCTACTATGTGAACGTGTACCCGACGACCCCGGAGACCTAT
GTTGCGCCAAGTACCCCC-TCGTTGACCCGTACATCTACAGGAAAACGTGTACCACTACCGTCGAAGAACGATAGTACCA
CTACTTCTACTACCGTCGCG-G-AACGACTTCTTACTCTACTTCCCTCGTCGAACCAGAACCATTCCGAGAACGCACGCT
TTGAAGGTATAACC-CCGAGACGACCGCCCGTGAAAGAA----GGCATGTGTGATGTATGA-------------------
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>chr4A_1_TraesCS4A01G156800
ATTAGGGAGCTATATTAAATATTCCATTTTTCGGAATCACCCATAAACACACTTGCACATTCCCCATGTCTTTTCTAGTT
CAAGCTTGACTTCAAAACCTTGCCAAAAATTCTCTTCCCATTTACCGAGGTTCCTCCAAAAATCCAAACATTTTTGGGCG
CTTCAAAATCTTAGTCCTAGTTCAAACCATTTGAATTAAATTCAAATGAGTTTGAATTTAAATCTTTCAATCAGGCAACT
TG-TTTTTCCCTGGTTCAAGACCTTTTTTTGCGAGTCCAAGAA-------------------------------------
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-ATTTAACTTCTTCCTCAGAGTCTTTCCCTAACCCTCTCTTTCTATTTATTCTCTCTATTTTTCTCTCTTTCTTCTAAGG
AGAATAAGAGAGAGTATAAAGAGACAAGAGATAAGCCAGCCCACCTAGGCCCCCCAACCTCCTACGCTGGCCTGCCTAGG
CCATCTGCGCCTAAGGCCCAGCAGCGCCCAGATCTAACCCTAGGCCCCCGATCCCATCTCACTCCCTCGTCTCCCCTTGC
GCCGCTAGAACCCCATCCCGATTGATCCCTTCTCTCCCCTTCGTCCTCCTCACGCAGCGCACCCCGTGCCAGATCCTCTC
TGCCTCCTTTCCCTCCTAGCGCCGCCGCCAGGGCACCTCGCCCGACCCTACGCCACCTTGTCCCCGCCGCCAACTCTCCT
CGTCGGAGGAGCACCAGAAGGAGGGGAACACCACATCGCCACCCCGCGCTCAAGCTCCTCCGCCCCTGAGCTCCGTTTGC
GCTGCCGCTTTCCCGCATCCGGCTCTGGTCGACCAGGTTTCACTCATCTTCGCCATCGTGCCGGGCCCCGGACCTCCACT
ACGAGCCTCGCCGCCCCTGCATCGCGCGAGTCGCCGAGCCCCTGCCTCCCCTACGACCCAACCGGGCCGCCGCTGCGTCC
TCTGCAGCGACCGCTCGCCTCCTCTGCGTCACATGGTGGGCCGCCTTGTTCTAGGGCTTGCGGTCGCCATCCCAAGTCCA
TGTCGCCCCTGAGCCCCGGCGCCCCCTTTGCTCCGTTGCACGCCGATGGCATCCTCGTCGCTCAAGCCTTTTTCCTCACC
CTGCTGCTTTCAGTTGTTGTTGGTTCGTTTGGCCATCATGGACATGTTGCTGCGGACTCCCAGTACAACTACACCATGGT
GATACGTGAACGACTACTCGGCTATGACAAGTGTACCTCTACATCCTGGAATCGCTAAGTACCGCACCGAAACGCATGTA
CAACAAGGAACCCCGAAGGACTTGGATGCTCCAAGTTCCTCTCCGACACGCGCCAAGTTCCTCTCTGACACGCGCCAAGT
TCCTCTCTGACAAGTGTACGACTACACCCAACGATGCGACAACTACCTCTACCGTCGACCCTCGAAGGCACCATGGACGT
CAAGTTCCTCGCCATGTACCACTACCGTCGACGTGTACGTCTACTATGTGAACGTGTACCCGACGACCCCGGAGACCTAT
GTTGCGCCAAGTACCCCC-TCGTTGACCCGTACATCTACAGGAAAACGTGTACCACTACCGTCGAAGAACGATAGTACCA
CTACTTCTACTACCGTCGCG-G-AACGACTTCTTACTCTACTTCCCTCGTCGAACCAGAACCATTCCGAGAACGCACGCT
TTGAAGGTATAACC-CCGAGACGACCGCCCGTGAAAGAA----GGCATGTGTGATGTATGAGATG---CTC---GTGCTA
GCACCATGCTCGAATTGTTGCTTGCA--CGTTGTTCTTTGTTT-GCCATGCCATCGTCTCGTGGGA-ACCCAGTAACCGG
GATCAGTCCCCGTCACTCTTG---CTTGTTCCG------CACACTTGTTCTTTTCCATCAGCATCTCAATCGAGTTACC-
-GGAACCGGAACGTTACCGTGGCACCGTTTTCGT-TATCGTCGTCGTGG--CACCCTTTCTTTCCACCACGGTGACAAAT
GCTTCATAATATGCTCATCTCAACTTTTTCAT-AAAAAATGCTTAAAACTTGCATATGCCATCCGCATCATGATAACAAC
ATTTAAAATGGTTAAAATTGTTCTTTGCTTTAAATTGCTAAATGCACATGTGGGGATTTACCGGA---ATTG----TTGT
TATTTCCGGCCTCATTTAAACTTGCCTAA-AT-GTTTAGTTTACTTATGATTCACCTCTTGCCATGTTTAAAAACATTTA
ATATTATCCAGTACATAAACGGGAGTGCACTAAATAATGGAATGTGGTGTTTCGTCAATATGCAACTC-ATTGCATATTG
GGCTCCACTTAACTTGTAGTTTTGCTTGT-GCGCTTTGCCAGGCCATGCCT-CATTAAACCGGACATGCATCATACTTGG
TTGTGCATCATGCCATGATTATGTGATGGTTGTTTACCATGTTGTTTGCTTCTTTCCGGTGTTGCTTCTTCGG-GTTAGT
TCCGATAACGTCGCAT--TTGTGAGGATTCGTTCGACTACGTCCGTTTGTCTTCTTCATGGACTCGTTCTTCTTCCTTGC
GGGATCTCAGGAAAGATGACCA-TACCCTTGAAATCACTTCTATCTTTGCTTGCTAGTTGTTCGTTCTATCGCTATGTCG
CGCTACCTACCACTTGTT-TATCATGCCTCCCATATTGCCATGTCAAACCTCTAACC----C-A-CCTACCTAGCAAACC
GTTGTTTGGCTATGTTGCCGCTTTTGCTCAACTCCTCTTATAGCGTTGCTAATTGCAGGTGAAGATGAA
>chr4A_1
ATTAGGGAGCTATATTAAATATTCCATTTTTCGGAATCACCCATAAACACACTTGCATATTCCCCATGTCTTTTCTAGTT
CAAGCTTGACTTCAAAACCTTGCCAAAAATTCTCTTCCCATTTACCGAGGTTCCTCCAAAAATCCAAACATTTTTGGGCA
CTTCAAAATCCTAGTCCTAGTTCAAACCATTTGAATTAAATTCAAATGAGTTTAAATTTAAATCTTTCAATCAGGCAACT
TGTTTTTTCCCTGGTTCAAGACCTTTTTTTGCGAGTCCAAGAAATTTAACTTCTTCCTCAGAGTCTTTCCCTAACCCTCT
CTTTCTATTTCTTCTCTCTATTTTCTCTCTCTTTCTTCTAAGGGAATAAGAGAGAGTAGAAAGAGAGAGAGAGATAAGCC
AGCCCAACTAGGCCTCCCAACCTCCTGCGCTGGCCCACCTAGGCCATCTGCGCCTAAGGCCCAGCAATGCCCAGATCTAA
CCCTAGGCCCCCGATCCCATCTCACTCCCTCATATCCCCTTGCACCGCCAGAACCCCATCCCAATCGATCCCTTCTCTCC
CCTTCGTCCTCCTCATGCAGCGCACCCCGTGCCAGATCCCCTCTGCATCCTTCCCCTCCTAGCGCCGCCGCCAGGGCACC
GCGCCCGACCCTACGCCATCATTAAACCATCCTAACATTGGTGAATAAACCTTACTTGCATCAAATTTACAAGCTACAAC
ATGCTTAAATAAGCAAACATGCAATAAGTCATTGGACATAGAATCATCACCAAGATTAGAGGTCATATCAAAATGATTAA
ACATCGGTTCTTTTGCATCAACAGTTAATTCGATGGGTGCACTCAAAATTGTCGGTATTTCAGTTATTTGATCACATGAT
GCATTCATGACAATAACAAGATTCTCTAAAATAGGTGGTGTGCTCAAATCAACAGGTAACTCAACACAAGATGCATTCAA
GTTAACTAGGCATGCATCATTCTCATGTGAAGTTATATCATCAATACCTTTACTGTTACCTTGTCGCAAAGACGTAGCTG
ATGTAGGTACGGATGTTGATAATGTACCATACTCTTGAGATGATGTCGCGCTCACAATTCGAGGTGGGGCTGCTCTAGTA
GGTGCAACGGTGGAGGAACCAACTGGCGGTGGTGAGCATGAACTGGAATAGTAGTTGTTATAGTCACCCAATGCATCCTC
CTGTATCTGTATCTCAAAGGTACAAGCATGAACATACATACTAGTAATGCAACAAGGAATATACTGAAATCTTGCCTGAA
TATCATGCTTCAAACCACCAAAAAATCTTTTCATTGTATCATCCTCAGATTCTTCTATGTCACAATGATGCATATAAGAT
TTGAACTCTTGGTAGTAAGCATGAACAGTGTTGTTGCCTTGTTTAAATTGTTCAAATTTGCAAAGCAATTCACGACGATA
GTAAGGAGGGAAAAATTGTTGTCTCATTAAATATTTCAAATCTTTCCAAGTTGTGGGTTGGTTATCAATGTTTTTCTTAC
AATCCACACTCCACCAAACAGAAGCAAAACCAGTAAATGCTCTATTGATAGCTCGTACTCTCTCAAGTTCAGAAAAATCA
TGGTGAGTAAAAACTTGTTCTACTTCAAGCTCCCAAGCTAGATAAATAGCAGGATTAAATCTACCCTCAAATGATGGTAA
AGAGATAACCTGACCATATGCTTGTGTGTGTTGTCCCAACTCTCGCGATGGTGAAGATGTGTCCGTCGTCCAAGAACTTC
TATCTCCAGAACCTGTCATGATTAGTAGAAACAGGAAACAAAATTCGAGAATAATGTTCCTATGAACTACTAGGATGTGG
TTGTAAAGTGCTCACAGTAAAGAAAATATCTATATCGTACAAGTTCTTGCCATGGGCAGGTGGTGACAGGCAACCAGCGG
TGTCTAATAACTCCGAAGATTGTGTAAAGCGATTGACAGGGGAACGTACGTATACACAGTGTAGAAATATGTGGAACTGG
GTTGGCTATATATGGTAGCAAAAGATTAGCAATAATCAATTCAGAGATGCAATGTTAAATAAACGCTCAATGACGGTACT
GTGCTGGTCCTAGGCTAGACCGGACTAGAGACACGAGCCTAGAACACTAATGAGGTCACGACGTAGCACAACTAGCATCA
ATGAAGAATACTAAATAGCTCTGTACTGCAAGATATAAATGAAAATCACAATGGCAGTAAAGATAATGATGAAAAACAAC
TGCCAAGCAGGATATATCAATAACTTTCTCTCCAACTTTCCTCTGGAAAAGTTTGTGCCAATTTTTTGATTTTTTTTCAA
GAATTGTATTGACTCAAGCTTTCAAACGCAAATGGAATCACTCAATTCCGAGTTGATATGAGGAGTCAAGAAATTCTAAA
ACTAGCCTGAAAAACTGGAATAAGCTATGTTTGTGAACTTTGGAGGGAAAAAGACCTATTTAGAAGCCGATTTTGAGGTG
CCAAATACTGAACTAGCTTCTGCAACTATTTAGATGTGGTTCGTCGTTAGCTTTCATTTGAGTACTCGCGGAGCCAAAAC
GGACTTAGTATGAGAAAGTTATGCCTGTTTTACTAAATAGTGCACAAAACAGATTCCAATCCGAATTTAACTACGAGATT
GAGTCTAGATAGATCCGAATATTGTTTTTTTCTCCTTTTTTTCCTCACACTTTTTTCTTTTTCTTTCTCTCTTTTTTTCT
CTGACTTTTGTTTTACTTTTTGTTTTGTTTTTTCTCTATCTCTCTCTTTCCGAAACAAACTAGATAAGATGCAGATTGGA
TCAAGCAAAGATGTGAACAATCTCAACTATGATTATGACAATGAACGATGGGTAGCATGTGGTGGAAATTGATGGATGGG
TGATGGACAGCGGAAGGGGTAATGATGCAGTGGCGGCGTGACTAATATGAACAGAACTTGAAACACTAAACGAACTAGAC
ACTAAGACCAGCAACTCGACACGATGATGCAACCGATAGTTCAACTTTGCAAGCAATGAAAGGAAAACTGCAAAGGCTCA
GACTAGCTTGGACAAAGGATGAATAGATCTAACTTTTTTGTGGCTTTTTCTTGGACAATAGGTAAGAAAATAAATCTAAT
ATAGGAACAAATGGAAATTCTCATCGAGCAACATGAAAACTGATACCACTTGATAGAGGCGAGGGTGTCCCGATGTTTCG
ATGAGATAGATATCGTTTTCTATGGGAGTTGACTTTGTCGATCTGACTACGAACGTGCGAGGACGCCATTCCTTAGCAAT
CGCTAAACCAACTTCCTAGGGTTATTGACCACGCCGGAGCACGATCAACCTGACCACGAGGGTCTATTTCCTGCGAGCAA
ACGAAGAACAAGCAAGAAATTGAGATTGCAATATGAATATTGCAAATTAAAGAGGAAAGCTTTATTGATAAAGGTGGGGT
TCTGTGACGTCTTGTTCTGGTCGTTGGACACAAACGAAGTACGCGAAGTTGCAGCTATGGCGAACTTTTAATCTAAACAA
AACCCAAGGAAAAAGCTACTAGATGGATCTACTTATATAGGAGCAAGGGGTGGCGGCCAAGGAGGTGGAAGGACGTCCCA
AGATAGCCTAAAACTAAACCTAGGTCGTACAAGGCTCATGGGCCCAAGTGGAGGTGGTGCAACACCTTTGGACTTGTTAT
TTGACTCGGATTCTGCTACAGCGTCAGATTGTGTCGTCGATATCTCAATGCTCCGGACGAATTTGAAGGTGATTCCAATT
GGGTTGAAAATAGCATGAAATCTACTTTCCAACAAAAAAAGGATCATCCAATTCGGAGTCCGTATGAAAAAGTTGTTGAC
GTTTTGAGTCAGGTATGTCTGTGTAGTCCGAATTTGAATCCAGAACGTGAGAGACTTGGACTCTATCTTCTCTTGGCCCA
AAAGTGACGTGAGAGGACTTTTTGAACAGAACCCAAACTTCTTCTTTTCCCTTATCTTCATATGTGGATTGTACAAATGT
CCCATACACCTGGAATTAGACAAAACACAAAAGTTTGTGAAGTATTTTTGTTCTGAATAACATAAATATATTATTGAATA
GTTTGCACTAGAAATCACCTAACAAATATGCATGTATGCAATATTTTTGGTCGTATCCAAGGTAGTCATGTCCTCATCAA
ATTCACATGGTGATTCTCTTCATAACATATCCTCCCGATATTAGGGAGCTATATTAAATATTCCATTTTTTAGAATCACC
CATAAACACACTTGCATATTCCCCATGTCTTTTCTAGTTCAAGCTTGACTTCAAAACCTTGCCAAAAATTCTCTTCCCAT
TTACCGAGGTTCCTCCAAAAATCCAAACATTTTTGGGCACTTCAAAATCCTAGTCCTAGTTAAACCATTTGAATTAAATT
CAAATGAGTTTGAATTTAAATCTTTCAATCAGGAAACTTGTTTTTTCCTTGGTTCAAGACCTTTTTTTGCGACTCCAAGA
AATTTAACTTCTTCCTCAGAGTCTTTCCCTAACCCTCTCTTTCTATTTCTTCTCTCTATTTTTTA-TCTTTCTTCTAAGG
AGAATAAGAGAGAGTAGAAAGAGAG-AGACATAAGCCAGCCCACCTAGGCTTCCCAACCTCCTGCGCTGGCCCACCTAGG
CCATTTGCGCATAAGGCCTAGCAGCGCCCAGATCTAACCCTAGGCCCCCGATCCCATCTCACTCCCTCATCTCCCCTTGC
ACCGCCAGAACCCCATCCCGATTGATCCCTTATCTCCCCTTCGTCCTCCTCATGGAGCGCACCCCGTGCCAGATCCCCTC
TGCCTCCTTCCCCTCCTAGCACCGCCGCCAGGGCACCTCGCCCGACCCTATGCCACCTCGTCCCCGCCGCCAACTCTCCT
CGTCGGAGGAGCACCATCAGGA-GGGAACACCACGTCGCCACCCCGCGCTCAAGCTCCTCCGCCCCTGAGCTCGGTTCAC
GCTGCCGCTTTCCCGCATCCGGCTCTGGTCGACCAGGTTTCACTCGTCTTCGCCATCGCGCCGGGCCCCGGACCTCTGCT
ACGAGCCTCGCCGCCCCTTCATCACGTGAGTCGCCGAGCCCCTGCCTCCCCAATGACCCAACCGGGCCGCCGCTGCGTCC
GCTGCAGCGACCGCTCGCCTCCTCTGCGTCGCGTGGTGGGCCGCCTCATTCCAGGGCTTGTCGTCGCCATGCCAAGTCCA
TGTCGTCCCTGAGCCCCGGCGCCCCCTTTGCTCCGTTGCACGCCGATGGCATCCTCGTCGCTCAAGCCTTTTTCCGCACC
CGGCTGCTTTCGGTTGCTGTTGGTTTGTTTGGCCATCATGGACATGTTGCTGCGGACGCCCTGTACAACTACACCATGGT
GATACGTGAACGACTACTCGGCTACGACAAGTGTACCTCTACATCCTGGAATCGCTAAGTACCGCACTGAAACGCAAGTA
CAACAAGGAACCCCGAAGGACTTGGATGCGCCAAGTTCCTCTCCGACACGCGCCAAGTTCCTCTCC--------------
--------GACAAGTGTACGACTACGCCC-ACGATGCGACAACTACCTCTACCGTCGACCCTCGAAGGCACCGTGGACGT
TAAGTTCCTCGCCATGTACCACTACCGTCGACGTGTACGTCTACTATGTGAACATGTACCCGACGACCCCGGAGACCTAT
GTTGCCCCAAGTACCCCC-TCGTTGACCCATACATCTACAGGAAAATGTGTACCACTACCATCAAATAACGATAGTACCA
TTACTTCTACTACCGTCGCG-G-AACGACTTCTTCATGTACTTCCCTCGTTGAACTAGAACCATTCCGAGAATGCCCGCT
TCAAAGGTATAACC-CCGAGACGACTGCCCGTGAAGGAA----GGCATGTGTGATGTATGAAATG---CTC---GTGCTT
GCACCATGCTCGAATTGTTGTTTGCA--CGTTGTTCCTTGTTT-GCCATGCCATCATCTCGTGGGA-ACCCGGTAACCGG
GATCAGTCCCCGTCACTCTTG---CTTGTTCCG------CACACTTGTTCTTTTCCACCGGCATCTCAATCGAGTTACC-
-GGAACCGGAACGTTACCGTGGCACCGTTTTCGT-TATCTTCACCGTGG--CACCCTTTCTTTCCACCACGGTGACAAAT
GCTTCATAATATGCTCATATCAACTTTTTCAT-AAAAAATGCTTAAAACTTGCATATGCCATCCGCATCATGATAACAAC
ATTTAAAATGGTTAAAATTGTTCTTTGCTTTAAATTGCTAAATGCACATGTGGGGATTTACCGGA---ATTG----TTGT
TATTTCCGGCCTCATTTAAACTTGCCTAA-AT-GTTTAGTTTACTTATGATTCACCTCTTGCCATGTTTAAAAACATTTA
ATATTGTTGAGTACATAAACGGGAGTGCACTAAATAATGGAATGTGGTGTTTCGTCAATATGCAACTC-GTTGCATATTG
GGCTCCACTTAACTTGTAGTTTTGCTTGT-GCGCTTTGCTAGGCCATGCCT-CATTAAACCGGACATGCATCATACTTGG
TTGTGCATCATGCCATGATTATGTGATGGTTGTTTACCATGTTGTTTGCTTCTTTCCGGTGTTGCTTCTTCGG-GTTAGT
TCCGATAACGTCGCAT--TTGTGAGGATTCATTCGACTACGTCCGTTTGTCTTCTTCATGGACTCGTTCTTCTTCCTTGC
GGGATCTCAGGAAAGATGACCA-TACCCTTGAAATCACTTCTATCTTTTCTTGCTAGTTGTTCATTCTATCTCTATGTCG
CGCTACCTACCACTTGTT-TATCATGCCTCCCATATTGCCATGTCAAGCCTCTAACC----C-A-CGTACCTAGCAAACC
GTTGTTTGGCTATGTTACCGCTTTTGCTCAGCCCCTCTTATAGCGTTGCTATTTGCAGGTGAAGATGAA
>chr7A_1332
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----------CAAGTGTATGACTACGCCCGACGATGCGACAACTACCTCTATCGTCGACCCTCGAAGGCACCGTGGACGT
CAAGTTCCTCACCATGTACCACTACCGTCGACGTGTACGACTACTATGTGAACGTGTACCCGATGACCCCGGAGACCTAT
GTTGCGCCAAGTACCCCC-TCGTTGACCCAAATATCTACGGGAAAACATGTACCACTACTGTTGAAGACCGATAGTACCA
CTACTTCTACTACCGTTGCG-G-AACGTCTACTTCCTCTACTTCCCTAGTCGAACTCGAACCGCCGCGGAAATGCATGCT
TCAAAGGTATAACG-TCGAGACGACGCCCGTGGACCATATGCTTGT-GATGTGTTGTATGAGATG---TCC---GTGTTT
GCACCATGTACGAATTGATACTTGTA--CGTTCCTCG----TT-TCCTTTTCGTCGTCTCGTGGGA-ACCCGACATCCGG
-ATCACCCCACCATCCTTGCTTGACATGCTCCC------GCCACACTACCTTTTGCACCGGTATCTCCGT-GAGCTTCC-
-GGAACGGATATGGTGCCGTGGCATCATTTTTGGATTCA-TCGCCGTGG--CACCCTTTCTTTCCACCACGGTGACAAAT
GCTTCATAATATTCTCATGTCAACATTTTCAT-AAAA-TTGCAT-AAACTTGCATATGCCATCCGCATCTTGATAACAAC
ATTTAAAATGGTTAAAATGGTTGTTTGCTTC-AATTCCTAAATG-ACATGTGGGGATTTACCAGA---ATGGTTATTTGT
TGTTTCCGGCCTCACTTAAAATTTCCTAA-AATGTGTAG-TTTATTTTACCTCACATCTTGCCATGTTTAATAACATTTA
ATATTGTTGGGTACATAACCGGGAGTGACCTAAATAATCGAAAGTGGTGTTTCCTCAATATGCAACTT-GTTGCATATTG
AGCTCCACTTAATTTGTAGTATTGTTTGTTGCACTTTGCCATGCCATGCCT-CATTAAACCGGACATGCATCATACTTGG
TTGTGCATCATGCCATGTTACTGC-TTGTTGCTTTACCATGTTGTTTACTTGTTTCCGCTGTTGCTTCTTC-T-GTTAGT
TCTGGTAACGTTGCGT--TTGTGAGGACCCGTTCGACTATGTCCGTTTGTCTTCTTCTTGAACTCGTTTTTCCTGCTTGC
GGGATTTCAGGTGAGATGACCA-TACCCTCGAAATCACTTCTATCTTTGCTTGCAAGTTGTTCGCTCTATCGCTATGTCG
GGCTACCTACCACTTGCTATATCATGCCTCCCATATTGCCATGTCAATCCTCTAACC----CCA-CCTTCCTAGCAAACC
GTTGTTTGGCTATGTTACCGCTTTTGCTTAGCCCCTCTTATAGAGTTGCTAGTTGCAGCTGAA------
>chr3A_1332
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----------CAATTGAACGACTACGCCCGACGATGGGACAACTACCTCTACCGTCGAGCCTCAAAGGCACCGTGGACAT
CAAGTTCCTCACCATGTACCACTACCTTCGTCGTGTACGACTACAATGTGAACGTGTACACGACAACCCCGGGGACCTAT
GTTGTGCCAAGTACCTCC-ACGATGACCCGAACATCTACAGAAAAACGTGCACCACTACCGTCGAGGACCGATAGTACCA
CTACTTCTACGAACGTCCCGAG-AACGTCTACTTCCTCTACTTTGCAC--CGAACCCGAACC-CTCCGGAAAGGCACACT
TCAAAGGTATAATG-TCGAGACGACTGTCATGGA-CGAA----TGT-TGTGTGATGTATGAGATGAACCCC---ATGTTT
GCGCCATGCCCGATTTGATCCTTGCA--TGTTCCGCG----TT-TCCTTGCCACCGTCATGTGGGACACCCGGTATCCGG
GATAACTCCCCGTCACTCTTG---CACGTTTCGCGCACCCACACTGGTTCCTTTGCACCAGCATCTCAATTGAGTTGCTG
AATCACCGGAATGTTTCCATGGTAACATTTTCGT-TTCG-CCGCTGTGGCACCCCTTTTCCTTCTGTCATGGCGACAAAT
GCATCATATC-TTATCATGTCAACTTTTAATAAAAA-ATTGCATGAAACTTGCACATGGCATCCACATCATTATAACA--
-TTTAAAATGTCTAAAACTGTTGTTTGCCTTAAATTCCTAA--ATGCATATGGGG-TTTACCGGA---TTTGTTGTTTGT
TATATCCGGCCCCATTTAAATT-GTTTAA-ATAGT-TAGTTTAATTATGCCTCGCCTCTTGTCATGTTTAATAACATTTA
ATATTGTTGGGTACATAAACGAGACCGAACTAAATAATTG-ATGTGGTGTTTCGTCAATATGCAACTC-GTTGCATATTG
AGCTCCACTTAATATGTAGTATTGTTTGT-GCATATTGCCATGCCATGCCT-CTTTAAACCGAACATGCATCATACTTGG
TTGTGCATCATGACATGTTTACGTGATGGTTGTTTACTATGTTGCTTGCTTCTTTCTAGGTTGCTTC--TC-TCGTTAGC
TTCGGTTCCGTTCCGGAGTTGTGAGGATCTATTCGACTATGTCCGTTTATCTTTTTCGTGGACTCGTTCTTCTTCCTTGC
GGGATCTCAGGCAAGATGACCA-TACCCTCGAAATCACTTCTATCTTTGCTTGCTAGTTGTTCGCTCTGTTGCTATGTCG
CCCTACCTACCACTTGCTATAGCATGCGTCCCATATTGCCATGTCA-GCCTCTAACC----CAC-CTTTCCAAGCAATCC
ATTGTTTGGCTATGTTACCGCTTTTGCTCAGCCCCTCTATA----------------------------
>chr4A_1422
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--------------------ACTACCGTCGACGTGTACGACTGCTTTGTGAACGTGTACCCGACGACCCTGGAGACCTTT
CTTGCGCCAAGTACCCCC-TCGCTGACCCAAACATCTACAGGAAAACGTGTACCACTACCGTCAAGGACCGATAGTACCA
CTACTTCTACAACCTTCGCG-A-AACGACTACTTCCTCTACTTCCCTCGACGAACGCGAACCGCCCCGGAAATGCACGCT
TCCAAGGTATAACC-CTGAGACGACAC-CATGGACCGTA----TGCATGTGTGTTGTACGAGATG---CTC---ATGTTT
GCACCGTGTCCGAGATGT-CCTTGC----GTTCCTCCTTGTTT-GCCACGCTGTCAATCCGTGGGA-ACCCGGTATCCGG
GATCACCCCACCGTCCTTGCATGACATGCTCTC------GTCACATTTCCTTTTGCACTGGTATCTCCAT-GAGCTACC-
-AGAACCGATATGTTGCCGTGGCATCATTCTCGGATTTG-TTGTCGTGGCACCCCTTTCGTTTCTGCCACGATGACAAAT
GCTTCATAACATGCTCTTATCAAAATTTTCAT-AAATATTGCATAAAATTTCCAAATGTCATCCGCATCATGATAACAAC
ATCAAGAATGTTTAA-ATTGTTGTTTGCTTC-AATTGCTAAATG-ACATGTGTGGATTTCCTGGA---ATGGTTATTTGT
TGTTTCCGGCCTCACTTAAAATTTCCTAAAAT-GTGTAGTTTACTTTTGCCTCACCTCTTGCCATGTTTAATAACATTTA
ATATTGTTGGGTACATAACCGGGAGTGAACTGAATAATCGAATGTGGTGTTTCCTCAATATGCAGCTC-GTTGCATATTG
AGCTCCACTTAATTTGTAGTGTTGTTTGTTGCACTTGGCCATGCCATGAAT-CATTAAACCGTACATGCATCATCCTTGG
TTGTGCATCATGCCATGTTTATGC-TCGTGTGTTTACCATGTTGCTTGCTTCTTTCCGGTTTGCTTC--TC-TCGTTAGC
TTCGGTTTTGTTCTGGAGTTGTGAGAATTCGTTCGACTATGTTGGGTCGTCTACTTCTTGGACTCGTTCTTCTTCCTTGC
GGGATCTCAGGCAAGATGACCA-TACCCTCGAAATCACTTCTATCTTTGCTTCCTAGTTGTCCATTCTATCGCTATGTCG
CGCTACCTACCACTTGTT-TATCATGCCTCCCATATTGCCATGTCAAGCCTCTAACC----C-A-CATTCCTAGCAAACT
GTTTTTTGGCTAAGTTACCGCGTTTGCTCAGCCCCTCTAATAGCGTTACTAGTTGCTGGTGAAGTTGAA
>chr1A_1422
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--------------------ACTACCGTCGACGTGTACGACTACTTTGTGAACGTGTACCCGACGACCCTGGAGACCTAT
GTTGCGCCAAGTACCCCC-TCGTTGACCCGAACATCTACAGGAAAACGTGTACCACTACCGTCGAGGACCGATAGTACCA
CTACTTCTACTACCATCGCG-G-AACGACTACTTCCTCTACTTCCCTCGACGAACTCGAACCGCCCCGGAAATGCACGCT
TCGAAGGTATAACC-CCGAGACGACGC-TGTGGACCGTA----TGCATGTGTGTTGTATGGGATG---ATC---ATGTTT
GCACCATGTCCGAGATGT-CCTTGCA--CGTTCCTCCTGGTTT-GCCATGCCATCGACCCATGGGA-ACCCGGTTACCGG
GATCACTCCTTGTCACTCTTG---CATGTTCTG------CACACTTGTTCTTTTTCACCGGCATCTCAATCGAGTTACC-
-GGAACTGGAACGTTGCCGTGGCACCATTTTCGT-TATCGTCGCCGTGG--CACCCTTTCTTTCCACCACGGTGAAAAAT
GCTTCATAATATGCTCATGTAAACTTTTAACA-AAAA-TTGCAAAAAATCTACACATGTCATCCGCATCATGATAACAAC
ATTTAAAATGGTTATAATTGTTATTTCCATTAAATTGCTAAATATGCATATGGAGATTTTCCGGATTTATTG----TTGT
TGTGTCCGGCCTCATTTAAAAT-GCCTAC-AT-GTGTAATTTATTTATGCATCACCCCTTGCGATGTTTAATAATATTTA
ATATTGTTGGGTACATAAATGGGAGTGAACTAAATAACTGAATGTGGTGTTTCGTCAATATGTAACTC-GTTGCATATTG
AGCTCCACTTAATTTGTAGTATTGTTTGTTGCACTTTGTCGTGCCATGCCT-CTTTAGACTGGACATGCATCATACTTGA
TTGTGCATCATGCCATGTTTATGC-TTGGTTGTTTACCATGTTGTTTGCTCCTTTCCTATGTTGCTTCTTCTT-GTTAGT
TCTGGTAACGTCGCAT--TTGTGAGGATCCGTTCGACTACGTCCGTTTGTCTTCTTCATGGACTCGTTCTTCTTCCTTGC
GGGATCTCAGGCAAGATGACCA-TACCCTCGATATCACTTCTATCTTTGCTTGCTAGTAGTTCGTTCTATCGCTATGTCG
CGCTACCTACCACTTGTTATATCATGTCTCCCATATTGCCATGTCAAGCCCCTAACC----C-ACC-TTCCTAGCAAAAC
GTTGTTTGGCTATGTTACCGCTTTTGCTCAGCCCCTTTTATAGCGTTGCTAGTTGCAGGTGAAGTTGAA
>chr1A_1422
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--------------------ACTACTGTCGATGTGTATGACTACTTTGTGAACGTGTACCCGACGACCCCGGAGACCTAT
GTTGCGCCAAGTACCCCC-TTGTTGACCTGAATATCTATAGGAAAACGTGCACCACTACCGTCGAGGACCGATAGTACCA
CTACTTCTACTACCATCGCG-G-AACGACTACTTCGTCTACTTCCCTCGACGAACTCGAACCGCCCCGAAAATGCACGCT
TCGAAGGTATAACC-CCGAGACAATGC-CGTGGACTATA----TGCATGTGTGTTGTATGAGATG---CTC---GCGTTT
GCACCGTGTGCGAGATGT-CCTTGCA--CGTTCCTCCTCGTTT-GCCATGCCATCGACTAGTGGGA-ACCCGGTTACCAG
GATCACTCCCCGTCACTCTTG---CATGTTCCG------CACACTTGTTCTTTTTCACCAGCATCTCAATCAAGTTACC-
-GGAACCGGAACGTTGCCGTGACACCGTTTTCGT-TATCGTCATTGTGG--CACCCTTTCTTTCCACCACGGTGACAAAT
GCTTCATAATATGCTCATGGAAACTTTTAACA-AAAA-TTGCATAAACCTT-CACATGTCATCCGCATCATGATAACAAC
ATTTAAAATGGTTATAATTGTTGTTTCCATTAAATTGCTAAATATGCATATGGGGATTTTCTGGATTTATTG----TTGT
CATTTCCAGCCTCATTTAAAAT-GCCTAC-AT-GTGTAATTTATTTATGCATCACCCCTTGCCATGTTTAATAGTGTTTA
ATATTGTTGGGTACATAAATGGGAGTGAACTAAATAATTGAATGTGGTGTTTCGTCAATATGCAACTT-GTTACATATTG
AGCTCCATTTAATTTGTAGTATTGTTTGTTGCACTTTGTCGTGCCATGCCT-CTTTAGACCGGACATGCATCATACTTGA
TTGTGCATCATGCCATGTTTATGC-TTGGTTGTTTACCATGTTGTTTGCTCCTTTCCGGTGTTGCTTCTTC-TTGTTAGT
TCCGGTAACGTCGCGT--TTGTGAGGATCTGTTCGACTACGCCTGTTTGTCTTCTTCATGGACTCGTTCTTCATCCTTGC
GGGATCTCAAGCAAGATGACCA-TACCCTCGATATCACTTCTATCTTTGCTTGCTTGTTGTTCGTTCTATCGCTATGTCG
CGGTACCTACCACTTGTTATATCATGCCTCCCATATTGCCATGTCAAGCCCCTAACC----C-ACC-TTCCTAGCAAACC
ACTGTTTGGCTATGTTACCGCTTTTGCTCAGCCCCTCTTATAGCGTTGCTAGTTGCAGGTGAAGTTGAA
>chr1A_1422
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--------------------ACTACCGTCGACGTGTACGACTACTTCGTGAACATGTACCCGACGATCCCGAAGACCTAT
GTTGCGCCAAGTACCCCCCTCGTTAACCCGAACATCTACAGGAAAACATGTACCACTACCGTCGAGGACCGATAGTACCA
CTACTTCTACTACCATCGTG-G-AACGACTACTTCCTCTACTTCCCTCGACGAACCCGAGCCATCCCGTT--TGCATGCT
TCGAAGGTATAACCGCCGAGCCGACCTTTCGAGAGCGAA----TGT-TGTGTGGTGTATGAGATA---CCC---GTGTTT
GCTCCGTGTCGGAGTTGTTCGTGGCA--CGAAGCCCCTCTTTT-GCCTTGCCACCGTCATGTGGGACACCCGGTAACTGG
GATCACCCCATCAT-CTTGCATGACACGCTCCC------GTCACACTTCCTTTTGCACCAGCATCTCAATCGAGTTACC-
-AGAACCGGAATGTTGCCGTGGCACCATTTCCGT-TGTCGTTCA-GTGGCACCCCTTTCGTTTCCGCCACGATGACAAAT
GCCTCATATC-TTATCATGTCAACGTTTTCAT-AAATACTGCATAAAACTTGCACATGTCATTCGCATCATGATAATAAC
ATTTAAA-TGTTTAAAACTGTTGTTGCACCAAATTGGT--AATT-GCATATGGGGATTTACCGGA---TTTGTTGTTTGT
TATATCCGGCCCCATTTAAATT-GTTTAG-ATAGTATAGTTTTGTTATGCTTCACCTCTTTTCATGTTAAGCAACATTTA
ATATTGCTGGGTACATAAACGAGATAGAAATAAATAATTTGTCATGGTGTTTCATCAATATGCAACGGAGTTGCATATTG
AGCTCCACTTAACTTGTAGTTTTGTTTGT-GCACTTTGCCATGCCATGCAT-ATTTAAACCGGACATGCATCATACTTGG
ATGTGCATCATGCCATGATTATGTGTTGGTTGTTTATTATGTTGTTTGCTTCTTTCCGGGTTGCTTC--TC-GCGTTAAC
TTCGGTTTCGTTCCGGAGTTGTGAGGATCCATTCGACTACGCCTGTTTGTCTCCTTCATGGACTCGTTCTTCTTCCTTGT
GGGATCTCGGGCAAGATGAGCA-TACCCTCGAAATCACTTCTATCTTTGCTTGCTAGTTGCTCGCTCTATTGCCATGCCG
CGATACCTACCACTTGCTATATCATGCCTCCCATATTGTCATGTCAAGCCTCTAACC----C-ACCTTTCCTAGCAAACC
GTTGTTTGGCTATGTTACCGCTT-TGCTCAGCCCCTCTTATAGCGTTGCTAGTTGCAGGTGAAGATGAA
>chr4D_1484
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--TGCGGCAAGT-CCCTCCACGATGACCCGAACATCTACAGAAAAACGTATACCACTACCGTCGAGGACCGATAGTACCA
CTACTTCCACTACCGTCGCG-AGAACGTCTACTTCCACTACTTCCA-CTACAAACCCGACCCACTCCGTAAAGGCACGCT
TCGAAGGTATAACC-CCGAGACGATGTTCGTGGACCGAATGC------ATGTGTTGTATGAGATG---CACCCTATGTTT
GGACCGTGTTCGAATTGTTCCTTGCAGGCGTTCGCCG----TAAGCCATGTCACCGACATGTGGGACACCCGGTATCCGG
GATCACTCCCCGTCACTCTTG---CATGTTTCGCGCACCCACACTTGTTCCTTTGCACCAGCATCTCAATCGAGTTGCC-
-GGAACCGGGATGTTGCCGTGGCACCATTTCCGT-TTCA-CCGCCGTGGCA-CCCTTTTCCTTCCGCCATGGCGACAAAT
GCCTCGTATCATGCTCATGTCAACATTTCCAT-AAA-ATTCCTTAAAACTTGCATATGTCATCTGCATCATGATAATAAC
ATTTAAAACGTTTAAAATTGTTGTTTGCTTTAAATTGCTAAATG-ACATATAGGGATTTTCCGGA---ATTGTTATTTGT
TATTTCCGGCCTCATTTAAACTTGCCTAAATAG--ATAGTTTTATTATGCTTCACCTCTTGCCATGCTTAACCACAGTTA
ATTTTTTTGGGTACATAAACGGGAGAGAACTAAATAATTG-ATGTGGTGTTTTGTCAATATGCAACTC-ATTGCATATTG
AGCTCCACTTAATTTGTAGTATTGTTTGTTGCATTTTGCCATGCCATGCGTCATTTAAACCGGACATGCATCATACTTGA
TTGTGCATCATGCCATGTTTATGTGATGGTTGTTTACCATGATGTTTGCTTCTTTCCGGTTGCGCTTCTCC-TTGGTAGT
TCCGGTAACGTTGCGA--TTGTGAGGATCCGTTCGACTACGTTGGTTCGTCTACTTTATGGACTTGATCTTCTTCCTTGC
GGGATCCCAGGCAAGATGACCA-TACCCTCGAAATCACTTCTATCTTTGCTTGCTCGTTGTTCGCTCTATTGCTATGTCG
CGCTACCTACCACTTGCTATATCATGCCTCCCATATTGCCATGTCCAGCCTCTAACCAT-----CCTTTCCTAGCGAACC
GTTGTTTGGCTAAGTTACCGCTTTTGCTCAGCCCTTCTTATAGCGTTGTTAGTTGCAGGTGAAGCTGAA
>chr5D_1484
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--TGCGGCAAGT-CCCTCCACGATGACCCGAACATCGACAGAAAAACGTGTACCACTACCGTCGAGGACCGATAGTACCA
CTACTTCCACTACCGTCGCG-AGAACGTCTACTTCCACTACTTCCA-CTACAAACCCGACCCGCTCCGAAAAGGCACGCT
TCGAAGGTATAACC-CCGAGACAACGTTCGTGGACCGAATGC------ATGTGTTGTATGAGATG---CACCCTATGTTT
GGACCGTGTCCGAATTGTTCCTTGCA--CGTTCGCCG----TAAGCCATGTCACCGACATGTGGGACACCCGGTATCCGG
GATCACTCCCCGTCACTCTTG---CACGTTTCGCGCACCCACACTTGTTCCTTTGCACCAGCATCTCAATCGAGTTGCC-
-GGAAACGGGATGTTGCCGTGGCACCATTTCTGT-TTCA-CCGCCGTGGCA-CCCTTTTCCTTCCGCCATGGCGACAAAT
GCCTCGTATCATGCTCATGTCAACATTTCCAT-AAA-ATTGCTTAAAACTTGCATATGTCATCCGCATCATGATAATAAC
ATTTAAAACGTTTAAAATTGTTGTTTGCTTTAAATTGCTAAATG-ACATATGGGGATTTTCTGGA---ATTGTTATTTGT
TATTTCCGGCCTCATTTAAACTTGCCTAAATAG--ATAGTTTTATTATGCTTCACCTCTTGCCATGCTTAACCACAGTTA
ATTTTGTTGGGTACATAAACGGGAGAGAACTAAATAATTG-ATGTGGTGTTTTGTCAATATGCAACTC-GTTGCATATTG
AGCTCCACTTAATTTGTAGTATTGTTTGTTGCATTTTGCCATGCCATGCCTCATTTAAACCGGACACGCATCATACTTGA
TTGTGCATCATGCCATGTTTATGTGATGGTTGTTTACCATGATGTTTGCTTCTTTCCGGTTGCGCTTCTCC-TTGGTAGT
TCCGGTAACGTTGCGA--TTGTGAGGATCCGTTCGACTACGTTGGTTCGTCTACTTCATGGACTCGTTCTTCTTCCTAGC
GGGATTTCAGGCAAGATGACCATTACCTTCGATATCACTTCTATCTTTGCTTGCTAGTTGTTCGCTCTATCACTTTGTCG
CGCTACCTACCACTTGCTATATCATGCCTCCCATATTGCCATGTCA-GCCTCTAACCTTTTC-ACCCTTCTTAGCAAACC
GTTGTTTGGCTATGTTACCGCTTTTGCTCAGCCCCTCTTATAGTGTTGCTAGTTGCAGGTGAAGATGAA
>SNPs
---------------------------------------------------------S----------------------
-------------------------------------------------------------------------------S
----------S------------------------------------------S--------------------------
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------------------------------------------------S--------------SSS--------------
----------------S-------SS---S--------------------SS-----------S--------SS------
----S-----S-------S-------------------------------------------------S-----------
S----S-------------------------S--------------------S-S---------------------S---
---------S----------S-----------------------------S-------S---------------------
----------------SS----S-----------S--------------------------------------S---SS-
---------------------------------------------S------------S-----------------SS--
------------------S----S--S------------------------S-S--------------------------
S-----------------------------S-S-------------SS---S--------SS--------S---------
-----S---------------------------------------------------------------------S----
-S---------S----S--------S-------------------------------S---S------------------
------------------------S------------------------------------------S--------S---
-----------------------------S-----------------------------------SSSSSSSSSSSSSSS
SSSSSSSS-----------------S---S------------------------------------------S-------
--------------------------------------------------------------------------------
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----------------------------------S-------------------------------------S-------
-S---------------------------------S-------------------------------------------S
------------------------------------S----------------------------------S--------
---------------------------------------------------------S----------------------
--------------------------------------------------------------------------------
------------------S-------------------------------------------------------------
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-----S-SS-----------------------------------------------------------------------
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-----------------------------------------------S--------------------------------
----------------S-------------S-S------------------S-----------------
>forward_5006
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--------------------------GGTCGACCAGGTTTCACTCA----------------------------------
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>reverse_5957
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------------------------------------TTTGTTTGCCATGCCATCGT------------------------
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---------------------------------------------------------------------
