>input_sequence_71547
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-----------------------------------------------------------AGTGCGCCATGAAGGTTCGAA
ATCTGTATTCCCTTCGCGAGGATCTAAACAGGGCAGCGGTTGTTGTCCTGTGGATACCCCTCTTATTCTGGATACCCCTC
GGTTGCATGGTTTTCCGCGTGAACGGCCTGCCTCCCAAATTCTCCGTTCAGGTCAGCGAGGCCAGGAGTCCCGAGGTTCC
CCGCGCGGCGGTCCCAGCCGACCCCGTCTCCACTACCACTACCAGTACCGCCTTCAACATTACCCTGCACGCCGTCAACC
GGCGCCCCGCGGACAGGTGCTACCGCCAAGGCGAGGCGGTTGTGCTCTACTCCGGCCTCACCGTCGCGTGGGGCCGCACG
CCGCGCTTCTGCGTGGGCGCGATGCATACACGGGACGTGACGGTCGTGGCATGGGCCGACGACGGTGTCCAGTTGCCTAC
CTTGCTCAGAGACCAGATGGCGATGGAGCGGCGTGCTGGCTCGGTGGAGCTCGATGTCGATCTGAGGCTGTTCCGGAGCG
ATGACGGCTCGGCCAGACCAACGTGGATGCGGTGCAAGGTGACGACGGGTGGACCCAAGCAGATGGACGGAGTTCCATGC
ACAGTATTCGCTCTGCAGAATTGGGCCTCGGATGTTGCCCCGTGTTGGATGCAGTGATTTTCAACAA-------------
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----------------TGTGTTTGTTTTTCTACCTAGTTATTTATGCAGGGCTTCTAAAAAA------------------
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>chr3D_1_TraesCS3D01G250200
AGGCCTAGACACACTCAATATCTAGCTTCAGCCCACGTAGTAATTTTCATTGAAGTGGTAAAAAAATTCCAAAAAAATGC
AGAAAACCCAATC-TTACTCGCTTCAATATAGGTATATAGATATTTCGAACCTACTAGAAATTACAAGTTCTATAGTCCT
GATCGTCATCTCTAACCTTAAGGTCGAACTCGAACCGATGCAAGGATTTAACACGGCAAACCTCTGTGCGCATCCAACAA
TCAGGATTGAACATCCTCATCTCTACCAGAATCTGTGCTGCGACCATGTTCCATTCCGATACGAGACGTCGGCGCAAATC
CTCGGACAGACCAACTTCCCACCCCCACGGCAGCACGGTGAACTCCGCCGCGGCGTTCCTCCGCACGCAGAAGACCGGCA
AATGGCCCCACGCGAGGGCAACGCCTGAGTAGGAGACCAGCACCTCCCCGCCGTTGGAGCACCACGGGTGAAGGGCGGAG
GGGTTCTCGACGCGCACGATGAGCGTGAATGCCGGAGAAACCGTGGGGCCAACCGTCGCGTTAAGCCCCGTGAAGGCGGC
CAGCTCCATGGAGAACACGGCATCTTCCGTCGTGGGTGAGGACAGGATGGAAACGATCATAACCACTAACCCGGCTGCCA
TGAATACACAAGCGAACGCATTGCGGGCTCTTAGCTCGATTGCACCCCAGGGGTCCAGGTCCACGTC------AATCGGT
TCCGGAGCGTCGACGCTTATGGCAACCATGAA-TTTTGTCCTAGGCCTTGAGCTATTGACAAGAACCACCGCCGTAAGCC
GTAGCAAAATCCGGTCACCAGAATATT-GGCCGGTAACTCAACGAAAAACTTTCCTGTATATAAGGAGTACTAGTACCGA
ACTACCGATCGAGCACAACCCCTGCCACAAATAACGCAAGAGATATA-----TC-----TCTTTTAAACAGGAAACACGT
GGAGAGATGGACCAGGTGAGCCTATAAATTCATAAACAGGCTGCTCATGAAAAAGTAGAAGTGCGCCATGAAGGTTCGAA
ATCTGTATTCCCTTCGCGAGGATCTAAACAGGGCAGCGGTTGTTGTCCTGTGGATACCCCTCTTATTCTGGATACCCCTC
GGTTGCATGGTTTTCCGCGTGAACGGCCTGCCTCCCAAATTCTCCGTTCAGGTCAGCGAGGCCAGGAGTCCCGAGGTTCC
CCGCGCGGCGGTCCCAGCCGACCCCGTCTCCACTACCACTACCAGTACCGCCTTCAACATTACCCTGCACGCCGTCAACC
GGCGCCCCGCGGACAGGTGCTACCGCCAAGGCGAGGCGGTTGTGCTCTACTCCGGCCTCACCGTCGCGTGGGGCCGCACG
CCGCGCTTCTGCGTGGGCGCGATGCATACACGGGACGTGACGGTCGTGGCATGGGCCGACGACGGTGTCCAGTTGCCTAC
CTTGCTCAGAGACCAGATGGCGATGGAGCGGCGTGCTGGCTCGGTGGAGCTCGATGTCGATCTGAGGCTGTTCCGGAGCG
ATGACGGCTCGGCCAGACCAACGTGGATGCGGTGCAAGGTGACGACGGGTGGACCCAAGCAGATGGACGGAGTTCCATGC
ACAGTATTCGCTCTGCAGAATTGGGCCTCGGATGTTGCCCCGTGTTGGATGCAGTGATTTTCAACAA-------------
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----------------TGTGTTTGTTTTTCTACCTAGTTATTTATGCAGGGCTTCTAAAAAAAAGTTATTTATGCAGGGA
GCCGATCCCAACCTGTCAGAGGACTAAAAATTTCGGTTTACTCATCTAACCAGTGTCTTGCCGAAGTAGTAAAACCATTA
GAGGAGTACTAAAATTTACTACCTCTATCCTGGTTTATTGGCCACT-TCGTATTTTAT--GTCAAATTCTGACCATAAAT
TAAACTAATAACATGTTAATACATGTCATAAAAAATCATATCGTTGGATTTGTATTTAAACATAGTTTTCAATGAAATAA
TTTTTTGTGACATGCATTGACATTTCTTTAGTTAAAACCATGGTCAAAATTTGACACTGAATACGAAGGGGACTAATAAA
CCAGGACGGATGTAGTACTCCGAGCTTCCATCCAGGAGTAAAAACACTCCCCCGCTCGGTAGCTGAGTCAAACACGCTCG
CCTCACCTACTGCCGCTCCACCGCCCAAATCACCACCCCGCCACCCAAATCACCTCCCTGCCTCTTCCTATGGCTAGATA
CGGTCGCCGCTGCTCGCCGTTGCCCAAATGCAATGCTTTGCCAGCGGATCCACGCCGCAACGCCTCCTCCTCCCGCGCCG
CACCAGCCTGACTCCTTCCATTCAGCGGAGGCGGCGGCACGTGCATACGACATCAAGTCAGTGCACTTGTACGGCGACAT
CGCCGGTCGTAACTTCC-CGACAGCTGTCTACCGCCATCGAAGCCGTCGATGGACCGATGGGTGGCCACTCCACACCAGC
GGCAGGAGGACCGAGTAGCCAGCGAGCTTCTCATGGCGGAGGCTGCCGGTGAGGCGTACATGGTGGAGCTCCGTCGAAGC
TTCCCGGAGCG---------------CCGCCTGTACACAGAGTTTGCTGCACGCAGGACCGAAGTCATCGATCTATCGAG
CGATGAGGACGGTGACGTCAACAGAGACAACCCGGACCCAATGATTAGCGATATGAGTAGGGCGGAATGGAAGGCACTAG
AGGAAGAATCGGACTAGGTTTCAAATTTCATTTCTAGTTCT
>chr3B_1
AGGCTTATACATACTCAATATCTAGCTCTAGCCCATGTAGTAATTTTCATGAAGCGGTA-----------AAACAAATGC
AGAAAACCCAATCCTTACTTGCTTTAATATAGGTATATATAGATATTACAAT--CTAGGAATTACAAGTTCTATAGGCCT
GATCGTCATCTCTAACCTTAAGGTCGAACTCGAACCGATGCAAGGATTTAACACGACATACCTCTGTGCGCATCCAACAA
TCAGGATTGAACATCCTCATCTCTACCATAATCTGTGCTGCGACCATGTTCCATTCCAATACGAGACGTCGGCGCAAATC
CTCGGACAGACCAACTTCCCACCCCCACGGCAGCACGGTCAACTCCGCCGCCGCGTTCCTCCGCACGCAGAAGGCCGGCA
AATGGCCCCATGCGAGGGCAACGCCTGAGTAGGAAACCAGCACCTCCCCGCCGTTGGAGCACCACGGGTGAAGGGCGGAG
GGGTTCTCGACGCGCACGATGAGCGTGAATGCTGGAGAAACCGTGGGGCCAACCGTCGCGTTAAGCCCCGTGAAGGCGGC
CAGCTCCATGGAGAACACGGCATCTTCCGTCGTGGGTGAGGACAGGATGGAAACGATCATAACCACTAACCCGGCTGCCA
TGAAGACACAAGCGAACGCATTGCGGGCTCTTAGCTCGATTGCACCCCAGGGGTCCAGGTCAACGTCCACGTCAATCCGT
TCCGGAGCGTCGACGCTTATGGCAACCATGAA-T-TTGTTCCAGGCCTTGAGCTATTGACAGGAACCACCGCCGTAAGCC
GTAGCAAAATCCGATCACCAGAATATTAGGCCGGTAACTCAACGAAAAACTTTCCTGTATATAAGGAGTACTAGTACCGA
ACTACCGATCGAGCACAACCCCTGCCACAAATAACGCAAGAGATATAGAGTATC-----TCTTTTAAACAGAAAACACGT
GGAGAGATGGACCAGGTGAGCCTATAAATTCATAAACAGGCTGCTCATGAAAAAGTAGAAGTGCGCCATGAAGGTTCGAA
ATCTTTATTCCCTTCGCGAGGATCTAAACAGGGCAGCGGTCGTTGTCCTGTGGATACCCCTCTTATTCTGGATACCACTC
GGTTGCGTGGTTTTCCGCGTGAACGGCCTGCCTCCCAGATTCTCCGTTCAGGTCACCGAGGCCAGGAGTCACGAGGCTCC
CCGCGCGGCGGTCCCAGCCGATCCCGTCTCCACTACCG------GTACCGCCTTCAACATTACCCTGCACGCCGTCAACC
GGCGCCCCGCGGACAGGTGCTACCGCCATGGCGAGGCGGTTGTGCTCTACTCCGGCCTCACCATCGCGTGGGGCCGCACG
CCGCGCTTCTGCGTGGGCGCGAAGGATACACGGGACGTGACGGTCGTGGCATGGGCCGACGACGGTGTCCAGTTGCCTAC
CTTGCTCAGAGACCAGATGGCGGTGGAGCGGCGTGCTGGCTCGATGGAGCTCGATGTCGATCTGAGGCTGTTCCGGAGCG
ATGACGGCTCGGCCAGACCAACGTGGATGCGGTGCAAGGTCACGACGGGTGGACCCAAGCAGACGGATGGAGTTCCATGC
ACCGTATTCGCTCTGCAGAACTGGGCCTCGGATGTTGCCCCGTCTTGGATGCAGTGATTTTTAACAA-------------
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----------------TGTGTTTGTTTTTCTACCTAGTTA----------------------------------------
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>chr3A_106
ATATA---------------------------------------------------------------------------
---------------------------------TATATATAGATATTACAAT--CTAGGAATTACAAGTTCTATAGCCCT
GATCGTCATCTCTAACCTTAAGTTCGAACTCGAACCGATGCAAGGATTTAACACGGCATACCTCTGTGCGCATCCAGCAA
TCAGGATTGAGCATCCTCATCTCTACCAGAATCCGTGCTGCGACCATGTTCCATTCCGACACGAGACGTCGGCGCAAATC
CTCGGACAGACCAACTTCCCACCCCCACGGCAGCACCGTCAACTCCGCCGCCGCGTTCCTCCGCACGCAGAAGGCCGGCA
AATGGCCCCATGCGAGGGCAACGCCTGAGTAGGAGACCAGCACCTCCCCGCCGTTGGAGCACCACGGGTGAAGGGCGGAG
GGGTTCTCGACGCGCACGATGAGCGTGAATGCCGGAGAAACCGTGGGGCCAACCGTCGCGTTAAGCCCCGTGAAGGCGGC
CAGCTCCATGGAGAACACGGCATCTTCCGTCGTGGGTGAGGACAGGATGGAAACGATCATAACCACTAACCCGGCTGCGA
TGAATACACAAGTGAGCGCATTGCGGGCTCTTAGCTCGACTGCACCCCAGGGGTCCAGGTCCACGT------CAATCGGT
TCCGGAGCGTCGACGCTTATGGCAACCATGAATT-TTGTCCCAGGCCTTGAGCTATTGACAAGAACCACCGCCGTAAGCC
GTAGCAAAATCCGATCACCAGAATATT-GGCCGGTAACTCAACGAAAAACTTTCCTGTATATAAGGAGAACTAGTACCGA
ACTACCGATCGAGCACAACCCCTGCCACAAATAACGCAAGAGATATA-----TTTCTTTTCTTTTAAACAGAAAACACGT
GGAGAGATGGACCAGGTGAGCCTACAAATTCATAAACAGGCTGCTCATGAAAAAGTAGAAGTGCGCCATGAAGGTTCGTA
ATCTTTATTCCCTTCGCGTGGATCTAAACAGGGCAGCGGTTGTTGTCCTCTGGATACCC------------------CTC
GGTTGCGTGGTTTTCCGCCTGAACGGCCTGCCTCCCAAATTCTCCGTTCAGGTCACCGAGGCCAGGAGTCCCGAGGCGCC
CCGCGCGGCGGTTCCAGCCGATCCCGTCTCCACTACCG------GTACCGCCTTCAACATTACCCTGCACGCCGTCAACC
GGCGCCCCGCCGACAGGTGCTACCGCCAAGGCGAGGCGGTTGTGCTCTACTCCGGCCTCACCGTCGCGTGGGGCCGCACG
CCGCGCTTCTGCATGGGCGCGATGGATACACGGGGCGTG--AGTCGTGGCATGGGCCGACGACGGTGTCCAGTTGCCTGC
CTTGCTCAGAGACCAGATGGCGGTGGAGCGGCGTGCTGGCTCGGTGGAGCTCCATGTCGATCTGAGGCTGCTCCGGAGCG
ATGACGGCTCGGCCAGACCAACGTGGATGCGGTGCAAGGTGACAACGGGTGGACCCAAGCAAACGGACGGAGTTCCATGC
ATAGTATTCGCTCTGCAGAATTGGGCCTCAGATGTTGCCCCGTCTTGGATGCAGTGATTTTTAACAACCCAAAATCTCAA
AAGTGACCACGCGCTAACGGGAGAGAACGAGCGGCCGAGCTTTTTTACCATGCATGAGTTGTATTTTTGTCTGTTAGTGC
ATGTCGTTATTAGTATTTAATGTGTTCACACTGGTTAGTCTAATTTTAAAGAAACAACTTCACGTATAATTATTTTGGTT
TTTCGAATTTTTAAAAAGCCATATCTTTCAAACCGTGCGCCGGAATTCAGATCCGTCTTCACTGTTGAATTCTTCGCGAC
GAGATCTTTGAAACTAGATCCCCCATGAGTATGTTTCGACGATTTTTTTTTTGATGCCAACTTTGACGCTATATTGTGCA
ACTTTAGTACTGCTTTGTGCAAGTTTAGTACTGCATGATGCAATTTTTTTCAAACCCATTTTTTTGGAGCTGCATCCACA
GTAGTTGTAGTTGCACACATAGTAGTCCTAGTTGGTACATGCATGGCCACAGAGTTGCACAATCTGGTCCGCATAGTCGC
ATATGAATTGTCATAGCTTGTAATGTAGTCTAGTTGCACACACATTGATGTTTAGTTGGCTTGTAACGTAGTCTAGTCGC
ACACACATTGATGTTTAGTTAGCAGGAATACTAGTTGCACACACATATGCTTAATTGGTTTGTAATATAGTTCAGTTGCA
CACACATTAATGTTTAGTTGGCAGGACACTAGTTGCACAACCATTGATATTTAGTTGGCAGGACTAGTTACACACACATA
TACTCAGTTGGCGCGGCAATGTATTCTAGTTGCATAATGCAGTACTTTAGTTGCACCATATAGCACCAAAGTTGGCATAA
AAAAATTCATCAAAACATACCCATGCGGGATCTAGTTTCGAAGATTTCGTCACGATGAATCCAAAGGTGAAAACGGATCT
GAATTCCAACGTGTGGTTTAAAAGATATGACTTTTTAAAGATTTAAGAGGCGAAAATAAATGTGTTTCACAGACTAGTCT
GTACGCATTTACTGTATGCATTTAATGCTAACGAAAACATCCACTAACTGACAAAAAAGACACACTAGGTAATTACTATT
TATAGATTATTAGGGACCAAAACTTGCAATTTTAAGCCGGCCGCTCGCAAAGTGTAGCAAGCAGCCGGCCGCTCGCTAGA
CCGGTCCTTTTAACAATGTGCTTGTTTTTCTACCTAGTTAGGT--------------------------------AGGGA
GCCGATCCCAACCTGTCAGAGGACT-------------------------------------------------------
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>chr3D_1000
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----------------------------------------------------------AACTGCGCCATGAAGTCTCGAA
ATCTCTACTCCCTTCGTGAGGATCTAAACAAGGCAGCGGTTGCTGTCATCTGGATGCCCCTCTTCTTCTGGATACCCATC
GGTTGCGCCTTCTTCCGCTTGAACGGCCTGCCTCCCAAGTTCTCCGTTCAGGTCACCGAGGCCACGAGTCCCGAGGCTCC
CCGGACGGCGGTTCCAGCCGACCCCATCTCCAGTA---------GTACCGCCTTCAACATCACCCTGCACGCCGTCAACC
GGCGCCCCGCGGACAGGTGCTACCGCCAAGGCGAGGCGGTCGTGCTCTACTCCGGCCTCACCGTCGCGTGGGGCCGCACG
CCGCGCTTCTGCGTGGGCGCGATGGATGCACGGGACGTGACAGTCGTGGCATGGGCCGACGACGGTGTCGAGTTGCCTAC
GTTGCTCAGAGACAAGATGGCGGCGGAGCGGCGTGCCGGCTCGGTGGAGCTAGAGGTCGATGTGCGGCTGTTCCGGGGCG
ACGACGGCTCGGCCAGACCGACGTGGATGCGGTGCAAGGTGACGACGGGTGGGCCGAAGCTGCCGGACGGGGTTCCATGC
ACCGTGTTCGCTCAGAAGAATTGGGCCTCGGATATTGGCCCGTATTGGATGCAG--------------------------
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>chr3B_1000
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----------------------------------------------------------AACTGCGCCATGAAGTCTCGAA
ATCTCTACTCCCTTCGTGAGGATCTAAATAAGGCAGCGGTTGCTGTCATCTGGATGCCCCTCTTCTTCTGGATACCCATC
GGTTGCGCCTTTTTCCGCTTGAACGGCCTGCCTCCCAAATTCTCCGTTCAGGTCACCGAGGCCAGGAGTCCCGAAGCTCC
CCGGACGGCGGTTCCAGCCGACCCCATCTCCAGTA---------GTACCGCCTTCAACATCACACTGCACGCCGTCAACC
GGCGCCCCGGTGACAGGTGCTACCGCCACGGCGAGGCGGTCGTGCTCTACTCCGGCCTCACCGTCGCGTGGGGCCGCACG
CCGCGCTTCTGCGTGGGCGCGATGGATGCACGGGACGTGACCGTCGTGGCGTGGGCCGACGACGGCGTCGAGCTGCCTAC
GTTGCTCAGAGACAAGATGGCGGCGGAGCGGCGCGCCGGCTCGGTGGAGCTCGAGGTCGATGTGCGGCTGTTCCGGGGCG
ACGACGGCTCGGCCAGACCGACGTGGATGCAGTGCAAGGTGACGACGGGTGGGCAGAAGCTGCCGGACGGGGTTCCATGC
ACCGTGTTCGCTCAGAAGAATTGGGCCTCGGATATTGGTCCGTATTGGACGCAG--------------------------
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>chr3A_1000
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----------------------------------------------------------AACTGCGCCATGAAGTCTCGAA
ATCTCTACTCCCTTCGCGAGGATCTAAACAAGGCAGCGGTTGCTGTAATCTGGATGCCCCTCTTCTTCTGGATACCCATC
GGCTGCGCGTTCTTCCGCTTGAACGGCCTGCCTCCCAAGTTCTCCCTTCAGGTCACCGACGCCACGAGTCCCGAAGCTCC
CCAGACGGCGGTTCCGGCCGACCCCGTCTCCAGCA---------GCACCGCCTTCAACCTCACCCTGCATGCCGTCAACC
GGCGCCCCGGGGACAGGTGCTACCGCCACGGCGAGGCGGCTGTGCTCTACTCCGGCCTCACCGTCGCGTGGGGCCGCACG
CCGCGCTTCTGCGTGGGCGCGATGGATGCACGGGACGTGACCGTCGTGGCGTGGGCCGACGACGGCGTCGAGCTGCCTAC
GTTGCTCAGAGACAAGATGGCGGCGGAGCGGCGTGCCGGCTCGGTGGAGCTCGAGGTCGATGTGCGGCTGTTCCGGGGCG
ACGACGGCTCGGCCAGACCCACGTGGATGCGGTGCAAGGTGACGACGGGTGGGCCGAAGCCGCCGGACGGGGTTCCATGC
ACCGTGTTCGCTCAGAAGAACTGGGCCTCGGATATCGGCCCGTATTGGATGCAG--------------------------
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>chr3A_1815
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----------------------CTCTTTTCTGATATATTGGTCTCCGTCATATTTTATGTGTCAAATTTTAATCATAAAT
TAAACTAATAAAGTGTTAATGCATGTCATAAAAAATCATATCATTTGATTCATATTTAAAC------TTCAATGGTATAA
ACTTTTGTGACATGCATTAACATTTTGTTAGTTAAAACTGTGGTCAATATTTGACAGCGAATACGAAGGGGACTAATAAA
CCATCTCGGAGTTAGTACTCTGAGCTTCCATTGAGGAGTAAAAACACTCACCTGCTCAGTCGCCGAGTCAAACACGCTCG
CCACATCTACCACCGCTCCACCACCCAAATAACCACCCCGCCACCCAAATCACCACCCTGCCTCTTCCTATGGCTAGATC
TCTCCGACGTTGCTCGCCGACGCCCATTTGCAGTGCTTTGCCAGCGGATCCACATGGTAGTGCCTCCTCCTCCCGCGCCG
CACCAGCCTGGCTCCTTCCATTCAAAGGAGGCGGTGGCGCATGCATACGACATCAAGTCAGTGCACTTGTATGGCGCCGC
CGACGGTCGTAACTTCCCCGATAGCTATCTACCGCCATCGGAGCCGTCGATGGACCGACGGGTGGCCACTCCACACTAGT
GGCAGGAGGACCGAGTAGCCCGCGAGGTTCTCATGGCGGATGTTGCCGGTGAGGCATACATGGTGGAGCTCCGTCGATGC
TTCCCGGAGCGTGTCGAGTCGGACCGCCGCCTGTACGTGGAGTTTGCCACACGCAGGATTGAAGTCATTGATCTGTCGAG
CGATGAAGACGGTGACGACAATAGAGA-----------------------------------------------------
-----------------------------------------
>SNPs
----S--S---S---------------SS------S--------------SS-SSS-SSSSSSSSSSSSS---S------
-------------------S----S--------------S-S--S-SSS-SSSS----S-----------------S---
----------------------------------------------------------S---------------------
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---------------------------------------S-----------S---------------------S------
----------S---------------------------------------------------------------------
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----------------------------------S------S--------------------------------------
-------------S------------------------------------------------------------------
-----------------------------------------------------------------------S--------
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----S---------------------------------------------------------------------------
------S------------------------------------------------S--------------------S---
-------------------------------------SSSSSSS------------------------------------
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------------------------S-------------------------------------------------------
----------------------S---------------------------------------------------------
---------------------------------------------------------------S----------------
-------------------------------------------S-----------------S------------------
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----------------------------------------SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----
-------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSS----S-S---S-S------S-S-S---S------------------S-S-S-------
-----------SS-------S---------------------S--S----SS---------SSSSSS-------SS----
SS----------------S------SS-----------SS-------S--------SS----------------------
---SSS----SS--------S----------SS----------------S--S----S--S--S----------------
--S--S----SS----------S-------S-----------------------S------------------------S
SSSS--S--S---------SS-----SS----S--------------------SSS-S-SS-------------------
----------S-------------SS--------S---S-S------------------------------S----S-SS
--S------------------S----S-------------S-----------------S-----------------S--S
--------------------S-----S-------------S-S------------S---------------------S--
------------------------------------SSS--------SS---------SS--------S-----S-----
------S----------S---S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_814
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-------------------------------------------------------------------------GTAAGCC
GTAGCAAAATCCGG------------------------------------------------------------------
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>reverse_3792
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-------------------------------CCGGACCCAATGATTAGCGA-----------------------------
-----------------------------------------
