>input_sequence_71543
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--------------------------------------------------------------------ATGGCGAGCGGG
GGCATCAAGACGATGGCCTCGGGCCTCCTGTTCCTGAACCTCATCATGTACGTCGTCGTCGCCGTCATCGCCGGCTGGGC
CGTCAACTACAGCATCGAAGACAGCGCCCACTCACGTAAGCCCGTCGCGCGCAAGCACCACATGCATGTGTGCGTGTGTC
GCATCGACTACA-----------------------------------GTATGTTTGATTTGCTGAGCCGTTGATGCAGTG
AGGGGCGCGTCGCCGCCGGTGCGCCTGTTCCCGATCTACTTCCCGATGGGCAACCTGGCGACGGGGTTCTTCATCATCTT
CGCGCTCCTGGCCAGCGCAGTCGGCATCTCCACCTCGCTCACCGGCCTGCGCGACGTCACCGAGGGCTACCCCGCCAGCA
TGATGTCGGCCGCCGCCTCCGCCGTCGTCTCCTGGACCCTCACCCTCCTCGCCATGGGACTGGCGTGCAAGGAGATCAGC
ATCGGCTGGAGGCCCCCGAGCCTGGTAATTAAGCACCAGTAAATCAATGGAGAATCTGTCGTATCC--CTCCTGTGCTTG
TGTGACCTAGCTAACGCGGCTCATC--TGTGTGTGCAGCGCGCGCTGGAGACGTTCACGATCATCCTGGCGGGGACGCAG
CTGCTCTGCGTCGGGTCGCTCCACGCCGGGGCCAACGCGGCCATCGAGCAGACGCCCATGGGTGTCAGAGCAAGGGTC--
-TGA----------------------------------------------------------------------------
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>chr1D_1_TraesCS1D01G250100
GTCTAACATGTAATGGATCCTAGGAATGGAGAAGATCGGTTTGTAGGGTCTTCCTCCATCGTTATCAGCAACGTAACGGA
TCCTACTACTCTCAAAGTTGTAGCGTGCCACTATTGCGTCTGATCTTGATCTTACACCGCAGAACCTTTACATCACATTG
GCCTC----AAAGCAACTTGTGATTGACATTGTATTTGATGCAGGATCGGTACAGAGCTATAGTGAAGGAAATCAAGGCT
ATGCCATCTAGTTCTGCGAATTGCAAATTCGTCTTGAGCGTCAAACTCA-AGGCCCATAATCTAGCCAAGTTCTCTCATT
CTTTAGATCGTGGAACCCACGTCTCGCTTGCCCAACCCCGTGATCATCTTGGTATTTCCATCTGGTTAAACCCTGATCAA
TAAAGCTTGGCTGATTATTATACTAAAAAAA-GCTGAATACTTATGGTTTATCGTTAAAGTGTCCAAAAAAG--TTGAAA
AATTGTGGTCAATTGCCAAGTTGTCATAAAACTTATTGTTCCACCTAAATAATCCCCTTAATTTCCTTCCGAAAAGATTG
TTCGAAGTTCTGAG------GGGTCCTTTCGAGGCTGGCGTTGCCGAGCAAGAGGGAAAAGAACATATGCAATCCATGCT
TGAAGCTAAAGCTTTCCCTGTCCACGAGCATATCACCCTATTCACCTGCCGAAGAAAAGAATTCCTGGCCCAGTGCAAGG
AG-----AGGAGAGGAGATCCGTCCCTTGCTCAGCGCGAAAGCAGCAGACCCCGAGCAAAGGCATACCGGCTGGCTTACT
CGCAAAGAAACGGCAGAATATCTGTGGCTTCTTCGTGTGCGTCTCTTAGCTGCGCGCCGACCTTTCCACCAGAGGAATGC
ATTT-CGGTGGCGCTTATATATGCCGCCGATCACCACGCCGTGATAGCACCCCACGACCGGAGCGGCATAGCAAAGGGAG
CGAGCAGAGCACACGAGCACGTACGGCGCATCCATCCCGTGTTCA-------GCAGCTAGCAA-TAGCATGGCGAGCGGG
GGCATCAAGACGATGGCCTCGGGCCTCCTGTTCCTGAACCTCATCATGTACGTCGTCGTCGCCGTCATCGCCGGCTGGGC
CGTCAACTACAGCATCGAAGACAGCGCCCACTCACGTAAGCCCGTCGCGCGCAAGCACCACATGCATGTGTGCGTGTGTC
GCATCGACTACA-----------------------------------GTATGTTTGATTTGCTGAGCCGTTGATGCAGTG
AGGGGCGCGTCGCCGCCGGTGCGCCTGTTCCCGATCTACTTCCCGATGGGCAACCTGGCGACGGGGTTCTTCATCATCTT
CGCGCTCCTGGCCAGCGCAGTCGGCATCTCCACCTCGCTCACCGGCCTGCGCGACGTCACCGAGGGCTACCCCGCCAGCA
TGATGTCGGCCGCCGCCTCCGCCGTCGTCTCCTGGACCCTCACCCTCCTCGCCATGGGACTGGCGTGCAAGGAGATCAGC
ATCGGCTGGAGGCCCCCGAGCCTGGTAATTAAGCACCAGTAAATCAATGGAGAATCTGTCGTATCC--CTCCTGTGCTTG
TGTGACCTAGCTAACGCGGCTCATC--TGTGTGTGCAGCGCGCGCTGGAGACGTTCACGATCATCCTGGCGGGGACGCAG
CTGCTCTGCGTCGGGTCGCTCCACGCCGGGGCCAACGCGGCCATCGAGCAGACGCCCATGGGTGTCAGAGCAAGGGTC--
-TGATCGGTCGACGCAGGCCGGCCGTCGATGCAGTGTGGTCTATTTGAAGGTGCATCATCATCATCATCTTGGCAAGGAG
AATTATTGGTTTGCGT----------------GTGCGTGCGTGTGATGTGAATAT--GCGGATTATATATGCTACCGTGT
CGGCGTTCTCAGGGTGTGTGTGCGCTTGCGGTGAAATTGTCTCCGGCCCGGTGGGGGTGACAATCACATAATATGTCGAG
TAGTA----TTATTCTCTAATTTGTGGGACTCTTGCATTCTGCACAAAATCTGGCAAATATATAACGTTGTTCATGCAAA
ATCTGGCAAACATTACTAATTCTGGGCTCCATTTATACAACAGCGTATTGAACGATTAAACGGTA-C----GCAACTGGG
TCGCTGAATAGAGACAGATGAAGCAGAGCTT--------------------------------------------TCACA
AATTCAGAAGCGGCTCTGTTTTTTTTTTTTGAGGAACACAAGCAGCTCTGTTTTTTTAGACAAAGAAGCAGCTCTGCTTG
CGTTGGACACCCACGACCACGAGTTCGCTCGCCCAAATGTGGTTACATCAGACGGAGGCCCAAAA-CGCCAACAAACGTG
ACGACCCGCATCAACTGACGGGCGGGCAAGGCTTCTGGCGCGGGAGTTTCACCGCAGCCGGGCACGCGAGCCCTCGGCGA
TACAGCAGCTCGGTCATGACGCGGTAACCATGCTGCGTGAGGTGGATGCCGTCCCAGTTGGGACGCCTGCTTGGGTCCGC
GCACACCGTCGTCCCCGGCGCGCCGCACAGCCTGTTGTTGTCAAAGTTATACTCCCTGCCGCCCGCGCCGCAGCACGCCC
TACGCAGGGCCGCGCCGCCCTCGAAGCCGAGCCGCGGCGCGTGGCCGAGGATCTCGAGGTAGGCGGCGAAGTAATCGGCG
TAGGCCACCTTCGCGTCCGGGTACGACCGCCGCAGCTCCCCGATGGCGCGGCGCAGGCGCTCGTTGTGCGCGCGCGCCAG
GACGTTGAAGGAGACAAGGCAGCCGTCGCCGTCGCG
>chr1A_1
GTGTAACATGTAACGGATCCTAGGAATGGAGACGATCGGTTCTTAGGGTCTTCAT-----GTTATCAGCAGCGTAGCGGA
TCCTACTACTCTCAAAGTTGTAGCATGCCGCTATTGCGT------TTGATCTTGCACCGCTGAACCTTCACATCACATTG
GCCTCAAAAAAAGCAACTTGTGATTGACATTGCATTTGACACGGGGGTCGATACTAAGC-TAGTGAAGGAAATCAAGGCT
ATGCCATCTAGTTCCGCGAATTGCAAATTCGTTTTGAGCGTCAAACTTGGAGGCCCATAATCTAGCCAAGTTCTCTCATT
CTTCAGATCGTGGAATCCATGTCTGGCTTGCCCAACCCCATGATCATCTTGATATTTCTATCTCGTTAAACCCTGATCAA
TAAAGCTTGGCTG---ATTATACTAAAAAAAAGCTGAGTACTTCTGGTTTTGCGTTAAAGTGGCCAAAAAAGA---AAAA
AATTGTGGTCAATCGCTAAGTTGTCATAAAAGTTTTTGTTCCACTTTAATAATCCACTTATTTCCTTTCGAAAAAGATTG
TTGGAAGTTCTGCTTTTGACGGGTCCTTTGGAGGCTGGCGTTGCCGAGCAAGAGGGAAAAGAACATATGCAATCCATGCT
TGAAACTAAAGCTTTCCGTGTCCACGAGCATATCACCCTATTCACCTGGCGAAGAAAAGAATTCGTGACCCCGTGCAAGG
AG-----AGGAGAGGAGATCCGTCCCTTGCAGACCGCAAAAGCAGCATACTACCT-------------GGCTGGCTTACT
CGCAAAGAAACGGCAGAATATCTGTGGCTTCTTCGTGTGCGTCTCTTAGCTGCGCGCCGACCTTTCCACCAAAAGAATGC
ATTT-CCGTGGCGGTTATATATGCCGCCGATCACCACGCCGTAGCAGCACACCACGACCGGAGCGGCATAGAAAAGGGAG
CGAGCTGAGCACACGAGCACGCACGGCGCATCGATCTCGTGTTCGGCAGCT--CAGCTAGCAGCTAGCATGGCGAGCGGG
GGCATCAAGACGATGGCCTCGGGCCTCCTCTTCCTGAACCTCATCATGTACGTCGTCGTCGCCGTCATCGCCGGCTGGGC
CGTCAACTACAGCATCGAGGACAGTGCCCACTCACGTAAGCCCATCGTCTGCAACCTCTGATCAGAAGTTCAGAGCCTGA
AGAATACTCGTCTGTTTGATCTTGTCCTGGTGTTGATGGATGTGCATGTATGTTCGATTGTTCGTGCTCG---TGCAGTG
AGGGGCGCGTCGCCGCCGGTGCGGCTGTTCCCGGTCTACTTCCCGATGGGCAACCTGGCGACGGGGTTCTTCGTCATCTT
CGCGCTCCTGGCCGGCGCGGTCGGCATCTCCACCTCGCTCACCGGCCTGCGCGACGTCACCGAGGGCTACCCCGCCAGCA
TGATGTCCGCCGCCGCCTCCGCCCTCGTCACCTGGACCCTCACCCTCCTCGCCATGGGACTCGCGTGCAAGGAGATCAGC
ATCGGCCTGAGGCCCCCCAGCCTGGTAATTAAGCACCAGTAAATCAATGGAGAATCTGTCGACCCCATCTCTTGTCCTTG
TGGAACCTAATTAACGATGTTCATCTGTGTGTGTGCAGCGCGCGCTGGAGACGTTCACGATCATCCTGGCCGGAACGCAG
CTGCTCTGCGTCGGGTCGCTGCACGCCGGGGCGAACGCGGCCATCGTGCAGACGCCCATGGGAGTCAGAGCACGGGTCTG
ATGATCGGTCGACGCAGGCCGGTCGTCGATGGAGTGTGGTCTATTTGAAGGTGCAGCATCATCTTGGCA---------AG
GATTATTGGTTTGCGT----------------GTGCGTGCGTGTGATGTGAATAT--GCGGATTATATATGCTACCGTGT
CGGGGTTCTCAGGGTGTGCGTGCGCTTGCGGTGAAATTGTGTCCGGCC-GGTGGGCGTGACGATCACATAATATGTCGAG
TACTAGTATTTATTCTCTAATTTGTGGGACTGTCGCATTCTGCACAAAATCTGGCAAATATATAACGTTGCTCATGCAAA
ATCTGGCAAATATTACTACTTCCGGGCACCATTTATACAACAGCGTATTGAACGACTAAACGGTAAC----GCAGCTGCG
TCACTGAATAGAGACAGATGAAGCAGAGCTTTCACAATTTATTTTTAAACCGGGCATTACCCCTTTCCATTACTTTCACA
AAATTGGAAGCAGCTCTGTTTTTTTTTG--GAGAAACACAAGCAGTTCTGGTTTTTGTGAGACATCCACG----------
----------------------------------AAATGTGGTTACACCAGACGGGGGCCC-AAA-CGCCAACAAACGTG
ACGACCCGCATCAACTCACGGGCAGGCAAGGCTTCTGGCGCGGGAGTTTCACCGCAGCCGGGCACGCGAGCCCTCGGCGA
TACAGCAGCTCGGTCATGACGCGGTAACCATGCTGCGTGAGGTGGATGCCGTTCCAGCTAGGACGCCTGCTCGGGTCCGC
GCACACCGTCGTCCCCGGCGCGCCGCACAGCCTGTTGTGATCAAAGTTATACTCCCCGCCGCCCGCGCCGCAGCACGCCC
TACGCAGGGCCGCGCCGCCCTCGAAGCCGAGCCGCGGCGCGTGGCGGAGGATCTCGAGGTAGGCGGCGAAGTAGTCGGCG
TAGGCCACCGTCGCGTCC-GGTACGACCGCCGCAGCTCCCCGACGGCGCGGCGCAGGCGCTCGTTGTGCGCGCGCGCCAG
GACGTTGAAGGAGACGAGGCAGCCGTCGCCGTCGCG
>chr1B_448
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-----------------------------------------------------GTTAAAGTGTCCATAGAATGTTTAAAA
AATTGTGGTCAATTGCTAAGTTGTCAAAAGGTTGTTGTTTGATAC----TAATCCCTTAATTTTCTTTCGAAAAAGATTG
TTGGAAGTTCTG------ACGGGTCCTTTCGAGGCTGGCGTTGCCGAGCAAGAGGGAAAAGGACATATGCAATCCATGCT
TGAAGCTAAAGCTTTCCCTGTCCACGAGCATATCACCCTATTCACCTGCCGAAGAAAAGAATGCCTGGTCCCGTGCAAGG
AGAGGAGAGGAGAGGAGATCCGTCCCTTGCAGAGCGCAAAAGCAGCAGACCCCGAGCAAA--------GGCTCGCTTACT
TGCAAAGAAACGGCAGAATATCTTTGGCTTCTTCGTGTGCATCTCTTAGCTGCCTCCCGACCTTTTCACCAAAGGAATGC
ATTTTCCGTGGCGTTTATATATCCCGCCGATCACCACGCCATATCAGCACACCACGATCGGAGGAGCATAGCAAAGGGAG
CGAGCTGAGCACACGAACACGCACGGCGCATCTATCTCGTGTTCAGTAGCTTGCAGCTAGCAA-TAGCATGGCGAGCGGG
GGCCTCAAGACGATGGCCTCGGGCCTCCTGTTCCTGAACCTCATCATGTACGTCGTCGTCGCCGTCATCGCCGGCTGGGC
CGTCAACTACAGCATCGAAGACAGCGCCCACTCACGTAAGCCCATCGCGCGCAAGCACGACATGCATGTGTGCGTGTGTC
GCATCGACTACG-----------------------------------GTATGTTTGATTTGCTGTGGCGTTGATGCAGTG
AGGGGCGCGTCGCCGCCGGTGCGCCTGTTCCCGATCTACTTCCCGATGGGCAACCTGGCGACGGGGTTCTTCGTCATCTT
CGCGCTCCTGGCCGGCGCGGTCGGCATCTCCACCTCGCTCACAGGCCTGCGCGACGTCACCGAGGGCTACCCCGCCAGCA
TGATGTCCGCCGCCGCCTCCGCCCTCGTCACCTGGACCCTCACCCTCCTCGCCATGGGACTGGGGTGCAAGGAGATCAGC
ATCGGCTGGAGGCCCCCGAGCCTGGTAATTAAGCACGAGTAAATCAATGGAGAATCTGTCGTGTCCATCTCTTGTCCATG
TGTAACCTAGCTAACGCGGCTCGTC--TGTGTGTGCAGCGCGCGCTGGAGACGTTCACGATCATCCTGGCGGGGACGCAG
CTGCTCTGCGTCGGGTCGCTGCACGCCGGGGCGAACGCGGCCATCGTTCAGACGCCTATGGGAATCAGAGCAAGGGTC--
-TGATCGGTCGACGCGGGCAGGCCGTCGATGGAGTGTGGTCTATTTGAAGGTGCAGCATCATCTTGACA---------AG
GATTATTGGTTTGCGAGTGCGTGCGTGAGTGCGTGTGTGCGTGTGATGTGAATATATGCGGATTATATGTGCTACTGCGT
CGGGGTTGTCAGGGTTTGTGTGCGCTTGCGGTGAATTTGTCTCCGGCC-GGTGGTTGTGACGATTACATAACATGTCGAG
TAGTA----TTATTCTCTAATTTGTGGGACTGTCGCACTCTGTACAAAATCTGGCAAATATATAACGTTGGTCATGCAAA
ATCTGGCAAATATTACTACTTCCGGGCTCCATTTATACAACAGCGTATTGAACGAATAAACGGTA-CGCATGCAGCTGCG
TAACTGAACAGAGACAGGTGAAGCAGAGCTT--------------------------------------------TCACA
AATTCAAAAACAGCTCTGTTTTTTTTTT--GAGACAAAGAAGCAGCTCGTACGTAC------------------------
-----------------------------------AATGTGGCTACACCAGTCGGAGGCCC-AAACCGCCAACAAACGTG
ACGACCCGCGTCAACTGACGGGCGGGCAAGGCTTCTGGCGCGGGAGTTTCACCGCAGCCGGGCACGCGAGCCCTCGGCGA
TACAGCAGCTCGGTCATGACGCGGTAACCATGCTGCGTGAGGTGGATGCCGTCCCAGCTTGGACGCCTGCTCGGGTCCGC
GCACACCGTCGTCCCCGGCGCGCCACACAGCCTATTACTATCAAAGTTATAAGCGCCGCCGCTTGCGCCGCAGCACGCCC
TACGCAGGGCCGCGCCGCCCTCGAAGCCGAGCCGCGGCGCGTGGCGAAGGATCTCGAGGTAGGCGGCGAAGTAGTCGGCG
TAGGCCACCGTCGCGTCAGGGTACGACCGCCGCAGCTCGCCGATGGCGTGGCGCAGGCGCTCGTCGTGCGCGCGCGCCAG
GACGTTGAAGGAGACGAGGCAGCCGTCGCCGTCGCG
>SNPs
--S----------S------------------S--------SS----------S-SSSSS----------S----S----
------------------------S----S---------SSSSSS--------S------S-------S-----------
--------------------------------S------SS-S--SSSS-SSSSS-SSSS--------------------
--------------S-----------------S--------------SS-------------------------------
---S-----------S---S----S--------------S-----------S------S----S----------------
-------------SSS---------------------S-----S------SS------------------------S---
----------------S--------------S--S-----------S-------------S----S---SS---------
--S---------SS------------------------------------------------------------------
-----------------------------------------------------------------------S--------
------------------------------SS-----S----------------------SSSSSSSS------------
-----------------------------------------------------------------------S--------
------S------S----------------------------SSS-----S-----------------------------
-----S---------------S----------S---S-------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------S--------------S---------------------
-----------S----------------------------------------------------S---------------
------------------------------------------------------------------------S-------
-------------S----S-------------------------------------------------------------
-------S---------------S-----S--------------------------------------------------
--------------------------------------------------------------S--------S---S----
---S----------------------------------------------------------------------------
--------------------S-----------S-------------S---------------S-----------------
-------------------------------S-----------------------S-------S-S-SSSSSSSSSSS--
S-------------------------------------------------------------------------------
---S--------------------------------------------S------S-----S------------------
-------------------------------S-S------------------------------------S---------
----------S-------S---S--------------------------------S------------------S---S-
--S-----------------------------------------------------------------------------
-----------S----------------SS---S----------------S-----SS--S-S-SSSS-SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------S-------------S------------------
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---------------------------------------------------------S-S-----------S--------
---------------------------------------S----------------S-----------------------
---------------------------------------------S---------------------------S------
---------S----------------------------------------------------------------------
---------------S--------------------
>forward_218
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--------------------------------------ATGCAGGATCGGTACAGAGC----------------------
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>reverse_1583
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--------------------------------------------------------------ATCCCTCCTGTGCTTGTG
TG------------------------------------------------------------------------------
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>forward_966
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------------------------------------------------------------------CATAGCAAAGGGAG
CGAGCA--------------------------------------------------------------------------
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>reverse_2270
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-----------------------------TGAGGAACACAAGCAGCTCT-------------------------------
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