>input_sequence_71528
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-------ATGGAGGAATCTATCAGCTCGTCTAGGACGCCGGGTGCTTCAGCTTCAGTCTTGGACGGCGACGTCGACTGCT
ACGCATCCGGGCCTGCCACCGCCGTGGCTTCCGACGACAGCGGCTGGACGGCCTACTTCATCGACGGCGACGACACCTAC
CTGCAGTTGCACAACTCCCAAGAGGTGCCAGCGAAGAAGCCCCACGGCGACCGCGCCTCCACTTCCACCTTGTCCACCGC
CAGCAAGACCAAGGCCAAGGCGAAGAAGGCAGCAGGCACCGAGGAGAACACCAAGAAGAAGATGCCTCGTTTGGAACCAG
CTGATGAAGACCCTCTCCAAGACACAGCCTGCTCCCCTGCAAACGCTAGCTATGCAACTCGTCAACTTCACCTGCAGGTA
CGCTTACTCCATT----TATTTCTGCCCATGCATGCACTGCACTCACAAGTTAGGTTAATTCAGTCGATCACTGATCAGG
GTGTCCTCTCTCATGAACAAATCA-ATGTTGATGGTCTCTCTCAAATATTCATCAGTATGCTTTCATGGGCATGCAGGAT
GGCTGGCAAATTGCTGGCTGCGAGTGTGAGCAGAGATCATCGTCAGCGGCACCAGCAGCGCGGCAGTGGGTTGAGTACTG
CAGGAGGCGCCAATGGGATTCTTCTCGGGAGGGGCCGGATGCAGAAATTAAAGAGGTGTTGGCTTAG-------------
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--------------------------------------------------------------------
>chr2D_1_TraesCS2D01G265600
GGGGGCGTCGAGAAGGTGCAATCGGCCACTGGCGTGCTACGACGGGCACCACTTGGAGCTGCAACCAGCCACCGTGGCGC
GCTTCGACCCGCGACAGGATGCTACGACAACAATGTCGGGTGTTGCAATCAGGATGTT-GGGGAGGGCGGAGCTACAAGC
TCAGCGATGCGGTGCTTTGAGCTCGCTGGCGGCGGGGATGGGGATGGAGGCTGCTGCGAAGCACAGTGTTGTACACGGCG
AGCGTGAGGCACGGGGCGAGGTCGGATGGCTGCCTTTGGCCTATCATGTGGTGCTGAAGGCCACCGATCGAGTCCTTACG
T-GGTCGACCGACGCAAAGCATTGCCCTTTCTTTAGTTGGTACTCCTAGCTTTTTCTGTCAACTATGTGTACTCCAACTA
GTGAACTTTACTGGGTATGGCGCTTAGTAGATGAAGATGACGAGCTAGTATAGCATGCACGTGTGCAAGATTTTTGTTCC
TTCCATTTGTCTAGTACTCCCCGTATATCTCCATGACTCCATGGGTTTTGATTCGGATCCAACTCCAACAGGCTTTCTGC
TGCATGGCTACATGTTTCCCGGAG-AAAAGTTATCGCTCTCTTGCTTAA-------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------CTTATCT
TTCCC---------TCCCATCCCT-----TCCATCCATGGATGGAACACCCCCCTCGTACGTGTGTCTCGAGTCCAGTTG
AGTGCACGGCCTGCAAATAAGTGCCCATGTGCGCATCATCCATCCGGCTTTATTG-------------------------
--------------------------------------------------------------------------------
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-----------TCAACGACACTTCACTGTAACCCCTCCGCCGCTCCACGTCCCGGTGCGCCTACCCTCCCCTCTCTCCGC
CATTATATAACACCATCACCAACCGCGCTCCCC-----CGGCGGACCTCCATGCCATATTTCTTACTCCAACCCATTCTG
CAACACTGCAATCTTCTTCTTCTTCTTCTTCTTCTTCT------------------------------------------
---AGCTAGCCACCTTACGCGGAGCTACCTGGCTGGCTAACTTAGCTTCAAGTTCATAGTCCACACACACATACGTACGT
TTGTCAAATGGAGGAATCTATCAGCTCGTCTAGGACGCCGGGTGCTTCAGCTTCAGTCTTGGACGGCGACGTCGACTGCT
ACGCATCCGGGCCTGCCACCGCCGTGGCTTCCGACGACAGCGGCTGGACGGCCTACTTCATCGACGGCGACGACACCTAC
CTGCAGTTGCACAACTCCCAAGAGGTGCCAGCGAAGAAGCCCCACGGCGACCGCGCCTCCACTTCCACCTTGTCCACCGC
CAGCAAGACCAAGGCCAAGGCGAAGAAGGCAGCAGGCACCGAGGAGAACACCAAGAAGAAGATGCCTCGTTTGGAACCAG
CTGATGAAGACCCTCTCCAAGACACAGCCTGCTCCCCTGCAAACGCTAGCTATGCAACTCGTCAACTTCACCTGCAGGTA
CGCTTACTCCATT----TATTTCTGCCCATGCATGCACTGCACTCACAAGTTAGGTTAATTCAGTCGATCACTGATCAGG
GTGTCCTCTCTCATGAACAAATCA-ATGTTGATGGTCTCTCTCAAATATTCATCAGTATGCTTTCATGGGCATGCAGGAT
GGCTGGCAAATTGCTGGCTGCGAGTGTGAGCAGAGATCATCGTCAGCGGCACCAGCAGCGCGGCAGTGGGTTGAGTACTG
CAGGAGGCGCCAATGGGATTCTTCTCGGGAGGGGCCGGATGCAGAAATTAAAGAGGTGTTGGCTTAGTCCATGTTAAACT
GTTGGTGGACCAGGGCAGACCAAAGACCAAACTGCTCACTACTGAATTGTGTAGTTCTTCT-----------TGTTTAAT
TGTTTATCCGCATGTTCCGCGACACTAATCTCATGCGTGCGTTGGGCCCAAAATCCCTGTTGTCATGTGCAATAATTAAT
AGTTATATATAGTTGCTGCTGTAGCTTGTACTACCAGTTTGACAAATTTCTACTCCCACCGTTGG---------------
-AGAGAGTAGCGTTGATGGAATTTTTTTCTCC-AAGAAACTTTCGATCTAATTATC------------------------
--------------------------------------AACGGTCAAGG------TAATAAAAAAGT-ACTAGAAGTAAA
ATTTACATGCAGGTCCGTAGACCAGCTAGCGATGACTTCAAGCACTGGAGCGAGCCGAAGGCACGCCGCCGTCATCGCCC
CTCCCTCGTCGGAGCCGGGCAAACATTGTTGTAGTACACAGTCGAGAAGTTGTCGTGCTAAGG-CCTCATAGGACCAACC
AAAACACACCAG-AACAGCAACTGCCGCCGAT--GAAGAGAAGGATAGGTCAGAAGGATCCAACCCGCAGACACACTGAT
GTAGACGAACGAAGACCGGATCCAGAC-GATCCACCAAAGACAAACACCAACCGGATCGCACGAGATCTAGCGGAGACAA
ACCTCCACACACCTTCCGATGACGCTTGAAACATCACCATGAAGGGGACTAGGTGGGGAGAACCTTATTTCATCTTCAAG
AAGCCGCCGGCGGCTC---GTCTTCCTGAGCATGGTACAAACCCT-AACAAAATTTAGAAAAGCACCT-AAAAACGCAAC
CCTTTCGCCGGCAAGGGCCGGTAT-CACCGCGCCTCCATGGTCCAATGACCATG-------TGAGACGAGGCGGAC---C
G---ATGGCGGCGTCGGTGAGAGGCAGGGAATCCCTAGACGAGAGGCAGGGTAACCCTAGATGAGAGTTCGATGGATTTA
CCTGACAACATCTCTTGCTATCTGATTGCACAACTAGCAAATTAAGCTCGGTAAAATGATAGATTCAA
>chr2A_3
--GGGCGTCGAGAAGGTACAATCGGCCACTGGCGTGCTACGA------------GGAGCTGTAACCCGCCACCGTGGCGT
GCTATGACTCGCGACAGGATGCTACGACAGCGATGTCGGGTGGTGCAATCAGGATGTTGGGGGAGGGCGGAGCTACAAGC
TCAGCGATGCGGTGCTTTGAGCTCGATGGCGGCGGGGATGGGGATGGAGGCTGCCGCGAAGCACAGTGTTGTACATGGCG
AGCGTGAGGCACCGGGCGAGATTGGATGGCTACCTTTGGCCTATCATGTGGTGCTGAAGGCCACCGATCGAGTCCTTACG
TCGGTCAACCGACGCAAAGCATTGCCTTTT-TTTAGTTGGTACTCCTAGCTTTTTCTGTCAACTATGTGTTTTCCAACTA
GTAAACTTTACTGGCTATGGCGCTTAGTAGATGAAGATGACGAGTTAGTATAGCATGCACGTGTGCCAGATTTTTGTTCC
TTCCATTTGTCTAGTA--CCCCGTATATCTCCATGACTCCATGGGTTTTGATTCGGGTCCAACTCCAACAGGCTTTCTGC
TGCATGGCTACATGTTTCCCGGAAAAAAAGTTATCGCTCTTTTGCTTAAGGGCTTGTTTGGTTTTAATAAGTCACCTGAC
TTATAAGTCAAGTGACTTAAAATCAGTGATTTATAAGTCACGTCTGTTTGGTTATCACCTGACTTATAAATCACCTGAGC
ACACCTTTCTATCTTGTTTTTTTATGTAAAGGTGATGGGACCCATACAAAAAGGATGATTTATAATTTCTAAGTTGGGGT
GAAGCAACTTATGACTTATAAGTTGGGGTAACTTATAAATTGAATCCTTTATTTAGAACCAAACAGGGCCTAACTTATCT
TTCCTCCCATCCCATCCCATCCCG-----TCCATCCATGGATGGAAC-CCCCCCTCGTACGCGTGTCTTGAGTCCAGTTG
AGTGCACGGCCTGCAAATAAGTGCCCATGTGCGCATCATCCATCCGGCGTTGATG-------------------------
--------------------------------------------------------------------------------
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-----------TCAACGACACTTCACTGTAACCCCTCCGCCGCTCCACGTCCCGGTGCGCCTACCCTCTCCTCTCTCCGC
CATTATGTAACACCATCACCAACCGCGCTCCCCCGGCCCGGCGGACCTCCATGCCATATTTCTTACTCCAACCCATTCTG
CAACACTGCAATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTAGCTAGCCACCTTACGCGCAGCTACCTGGCTGGCTAACTTAGCTTCAAGTTCATAGTCCACACACACATACGTACGT
TCGTCAAATGGAGGAATCCATCAGCTCGTCTAGGACCCCGGGTGCTTCAGCTTCAGTCTTGGACGGCGACGTCGACTGCT
GCGCATCCGGGTCTGCGACCGCCGTGGCTTCCGACGACAGCGGCTGGACGGCCTACTTCATCGACGGCGACGACACCTGC
CTGCAGTTGCACAACTCCCAAGAGGTGCCAGCGAAGAAGCCCCACGGCGCCCGCGCCTCCAGTTCCACCTTGTCCACCGC
CAGCAAGACCAAGGCCAAGGCGAAGAAGGCAGCAGGCACCGAGGAGAACACCAGGAAGAAGATGCCTCGTTTGGAACCAG
CTGATGAAGACCCTCTCCAAGACACAGCCTGCTCCCCTGCAAACGCTAGCTATGCAACTCGTCAACTTCACCTGCAGGTA
-GCTTACTCCATT----TATTTC----------TGCACTGCACTCACAAGTTAGGTTAATTCAATCGATCACTGATCAGG
GTGCCCTCTCCCATGAACAAATCA-ATGTTGATGGTCTCTCTCAAATATTCATCAGTATGCTTTCATGGGCATGCAGGAT
GGCTGGCAAATTGCTGGCTGCGAGTGTGAGCAGAGATCATCGTCAGGGGCACCAGCAGCGCCGCAGTGGGTTGAGTACTG
CAGGAGACGCCAATGGGATTCTTCTCGGGAGGGGCCGGATGCAGAAATTAAAGAGGTGTTGGCTTAGTCCTTGTTAAACT
GTTGGTGGACCAGGGCAGACCAAAGACCAAACTGCTCACCACTGAATTGTGTACTTCTTCTACCTTAGTGCGTGTTTAAT
TGTTTATCCGCATGTTCTGCGACACTAATCTCATGCGTGCGTTGGGCCCAAAACCCCTGTTGTCATGTCCAATAACTAAT
AGTTATATATAGTTGCTGCTGTAGCTTGTACTACCAGTTTGACAAAGTTTGCTCT-----------TATATTACGAGACG
AAGAGAGTAGCGTCCATGAAAACTTTTTTCTGTAAGAAACTTTCAATTTATTTATC------------------------
--------------------------------------AACTGTCATGG------TAGTATAGAAAC-CACT-AAGTAAA
ATTTACATCCAGGTACGTAGACCACCTAGCGATGACTTCAAGCACTGGAGCGAGCAGAAGGAGCGTCGCCGTCATCGCCC
CTCCCTCTTTGGAGCCGGGCAAACATTGTTATAGTAGACAGTCGGAAAATCATTGTGCTAAGATCT-CATAGGACC----
--AAGGCACCAG-AATAGCTACCGCCACTGAT--GAATAAAATGATAGATCGAAAGGATCCAACCTACAGACATACTAAT
GTAGACGAACGAAGACCGGATCTAGAC-GATCCACCAAAGACAAACGCCGACCAAATCGCACGAGATCTGTCGGAGACAA
ACCTCCACACGTCTTC--ACGATGCTTCAAACATCATCGTGACTGGCACTAGACGGGGAGAACATTATTTCATCTTCAAG
AGGCCCCCGCCGACTC---GTCTTCTTGAGTATGGCACAAACCTT-AACAAAACTTAGAAAAACACCT-AAAAACGGAAC
CCTTTCGCCGGCAAGGGCAGGTAT-CATCGCGCCTCCATGGTCCAATGACAATA-------GGAGATGAGGCGGAC---C
G---CTGACGGCACTGGTGAGAGGCAGTGAATCTCTAAACAAGAGGCAGGGAAACCCTAGATGAGAGTTTGATGGATTTA
CCTAACAA--TCTCTTGCTAACTGATTGCACAGCTAGCAAATTAAACTCGGTAAAATGATAGATTCAA
>chr2B_376
--------------------------------------------------------------------------------
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--------------------------------------------------------------------------------
---------------------------------------------------------GTCAACTATGTGTACTCCAGCCA
GTGAACTTTATTGGGTAAGGCGCTTAGCAGATGAAGATGACGAGCTAGTATAGCATGCACGTGTGCAAGATTTTTGTTCC
TTCCATTTGTCTAGTA--CCCCGTATATCTCCATGACTCCATGG-------------------TCCAACAGGCTTTCTGC
T-------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------TAACTTATCT
TTCCCTCCATCCCGTCCCATCCCATCCCATCCATCCATGGATGGAAC-CCCCCCTCGTACGTGTGTCTTGAGTCCAGTTG
AGTGCACGGCCTGCAAATAAGTGCCCATGTGCGCATCGTCCATCCGGCGTTAATGTCAGGCTGGTCATAGTGGGAGTAAC
ATAGGTAGTAACATAAATGCCACATAAGCAAAATTAGTGATGTGGCAAGTAGTTAATGAGGAAAGAGGCAAATAGAGTAA
CATAATATGTTACCATCACATAGCGGTTTCCAATGCATAATGAGTCTACAAAGTAATAAATGAAGGCAACTATGTTACCA
CACCTATGACACTACCCACTGTGAAGGTAGTAATATAGACTAGTAACATATGTATGTTACTAGTCTAAGTTACTCTCCAC
TATGACCAGCCTCAACGACACTTCACTGTAACCCCTCCGCCGCTCCACGTCCCGGTGCGCCTACCCTCTCCTCTCTCCGC
CCTTATATAACACCATCACCAACCGCGCTCCCCCGGCGC-----ACCTCCATGCCATATTTATTACTCCAATCCATTCTA
CAACACTGCAA------------------------------------------------------TCTTCTTCTTCTTCT
TCTAGCTAGCCACCTTACGCGCAGCTACCTGGCTGGCTAACTTAGCTTCAAGTTCATTGTCCACACACACATACGTACGT
TCGTCAAATGGAGGAATCTATCAGCTCGTCTAGGACCCCGGGTGCTTTAGCTTCAGTCTTGGACGGCGACGTCGACTGCT
ACGCATCCGGGCCTGCCACCGCCGTGGCTTCCGACGACAGCGGCTGGACAGCCTACTTCATCGACGGCGACGACACCTAC
CTGCAGTTGCACAACTCCCAAGAGGTGCCAGCGAAGAAGCCCCACGGCGACCGCGCCTCCACTTCCACCTTGTCCACCGC
CAGCAAGACCAAGGCCAAGGCGAAGAAGGCAGCAGGCACCGAGGAGAACAACAAGAAGAAGATGCCTCGTTTGGAACCAG
CTGATGAAGACCCTCTCCAAGACACAGCCTGCTCCCCTGCAAA---------TGCAACTCCTCAACTTCACCTGCAGGTA
CGCTTACTCCATTTAAGTATTTCTGCCCATGCATGCACTGCACTCACAAGTTAGGTTAATTCAATCGATCACTGATCAGG
GTGTCCTCTCTCATGAACAAATCAAATGTTGATCGTCTCTCTCAAATATTCATCAGTATGCTTTCGTGGGCATGCAGGAT
GGCTGGCAAATTGCTGGCTGCGAGTGTGAGCAGAGATCATCGTCCGCGGCACCAGCAGCGCGGCAGTGGGTTGAGTACTG
CAGG---------TGGGATTCTTCTCGGGAGGGGCCGGATGCAGAAATTAAAGAGGTGTTGGCTTAGTCCTTGTTAAACT
GTTGGTGGACCAGAGCAGACCAAAGACCAAACTGCTCACCACTGAATTGTGTAGTTCTTCTACCTTAGTGCAAGTTTATT
TGTTTATCCGCATGTTCTGCGCCACTAATCTCATGCGTGCGTTGGGCCCCAAACCCCTGTTGTCATGTGCAATAATTAAT
AGTTATATGTAGTTGCTGCTGTAGCTTGTACTACCGGTTTGACAAATTTCTACTCCCTCCGTCCCGTATATTACGAGACG
AAGAGAGTAGCGTTGATGGATTTTTTTTCTCC-GAAAAACTTTC-ATCTATTCATCAACGGTCAACTGTCAACGTAGTGA
TGCAGAGGCTGGGGTAAAACCCTTTTTTGAAAAAAAAAAACTGTCAACG------TAGTACAAAAAT-CATAGAAGTAAA
AATTG-ATCCAGGTCCGTAGACCAGCTAACGATGACTTCAAGCACTGGAGCTAGCCGAAGGCACGCCGCCGTCATCGTCC
CTCCCTCGTCGGAACCGGACAAACATTGTTGTAACAGACAGTCGGAAAGTCGTTGTGCTAAGGCCC-CATAGGACC----
--AACACACCAG-AACAGCAACCGCCGCCGATATGAAGAGAAGGATAGATCGGAAGGATCCAACCTGCAGACACACTGAT
GTAGACAAACGAAGACCGAATCCAGAC-GGTCCACCAAAGACAAACGCCGACCGGATCGCACGAGATCTGGCGGAGACAA
ACCTCCACATGCCTTCCGACGATGCTTAAAACATCACCATGACGGGGACTAGGCAGGGAGAACCTTATTTCATCTTTAAG
AAGCCGCCGCCGGCTC---GTCTTCTTGAGCATGTCGCAAACCCT-AACAAA-CTCAGAAAAGCACCT-AAAAACGGAGC
CCTTTTGCCGGCAAGGGCCGGTAT-CACCGCGCCTCCATGGTCCAATCACCATG-------GCAGATGAGGTGGAC---C
G---GTGCTGACGCAGGTGAGAGGCAGGGAATCCCTAGACGAGAGGCAGGGAAACCCTAGATGAAAGTTCGATGGATTTA
CCTGACAACATCTCTTGCTAACTGATTGCACAACTATCAAATTAAGCTCGGTAAAATGATAGATTCAA
>chr2A_1942
ATTTT---------------------------------------------------------------------------
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--------------------------TTTTCG-AGAAAACTTCCGATCAATTCATC------------------------
--------------------------------------AACAGTTAAGG------TAGTACAAAGAACACTAGAAGTAAA
ATTTACATCCAGGTTCGTAGACCACCTAGCGACGACTACAAGCACTAGAGCAAGCCAAAGGAGCGCCGCCGTCATCGCCC
CTCCCTCGTCGGAGTCGGGCAAACATTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGGCCC-CATAGGATC----
--AACGCACCAG-AACAACAACCGCCGTCGAT--GAAGAGAAGCGCATATCAGAAGGATCCAACTTGCAGACACACAGAC
GTAGACGAACGAAGACCGGATCCAGTCGAATCCACCGAAGACAAACGCCGACCGGATCCCACAAGATCCGTCG--GACAA
ACCTCCACACACCTTCTGACAACGCTTGAAACATCACCGGGATCGGGACTAGGCAGGGGGGGCCTTATTCCATCTCCAAG
AAGCCGCCACGGCCTC---GTCTTCCTGAGCATGGCACAAACCCT-AACAAAACTCAAAAAAGCACAGGAAAA-TGGAGC
CCTCCCGACAATAAGGGCCGGGATCCACCGTGCCTTCATGGTCCAAGGACCATA-------GGAGACGAGGCAGACTGTC
G---GCGGCGCCG-------------------------GCGAGAGGCAAGGAAAGCCTAGATGAGAG-------------
--------------------------------------------------------------------
>chrUn_1942
ATTATTT-------------------------------------------------------------------------
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-------------------------TTTTGCA-AGAAAACTTTTGATCTATTCATC------------------------
--------------------------------------AACTGTCAAGA------TAGTGCAAAGAACACTAGAAATAAA
ATTTACATGCAGGTCCGTAGACCACCTAGCAATGACTACAAGCACTGGAGCGAGCCGAAGGCGCGCCGCCGTCATCGCCC
GTCCCTCGTCGGAGCAGGGAAAACATTGTTGTAGTATACAGTCGGGAAGTTGTCGTGCTAAGG-CC-CATAGTACC----
--AACACACTAG-AATAGCAACTGCTGCCGAT--GAAGAGAAGCGTAGATCGGAAAGATCCAACCTGCAGACACACAGAC
ATTGACAAAAGAAGACCGGATACAGTCGGATCCACCGAAGACAAACACCGACCGGATCCCTTGAGATTGGTCGGAGACTA
ACATCCACATGCCTTCCAACGACGCTTGAAATATCACAGGGACGGGGGCTAGGTGGGGAGGACCTTATTCCATCTTCAAG
AAGCCGCCACCACCTC---GTATTCTTGAGCATGGCACAAACCCT-AACAAAACTCAGAAAAGCACCT-AAAA-CAGAGC
CTCCCCGCCAGCAAGGGCCGGGATCCACCGCGCGTCCATTGTCCAAGGACCATA-------GGAGATGAGGCGGAC---C
GGCAGCGGCACCG-------------------------GCGAGAGGCAAGGAAACCCTAGATGAGAG-------------
--------------------------------------------------------------------
>chr2A_1943
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---------------------TTTTTTTTGCG-AGAAAACTTTTGATGTATTCATC------------------------
--------------------------------------AACTGTCAAGGTAGTACTAGTACAAAGAACAGTAGAAGTAAA
ATTTACATCCAGATCCACAGACCACCTAGCGACGACTACAAGCACTGGAGCGAGCCGAAGGCACGCCGCCGTCATCGCCC
CTCCCTCGTTGGAGCCGGACAAACATTGTTGTAGTAGACAATCGGGAAGTCGTCGTGCTAAGACCC-CATAGGACC----
--AGCACACCAG-AACATCAACCGCCGCCGAT--GAAGAGAAACACAGACCGAAAGGATCCAACCTACAGACACACAGAC
ATAGACGAACACCGACCGGATCCAGTCGGATCCACCGAAGACAAACGCCGACCGGATCCCACGAGATCCACCGAAGACAA
ACCTCCACACGCCTTCCAACGATACTTGAAACATCATCGGGACGGGGGCTAGGCGGGAAGGACCTTATTCCATCTTCAAG
AAGCCGTCGCCACCTC---ATCTTTTTGAGTATGGCACAAACCCT-AACAAAACTCAGAAAAGTATCT-AAAAACGGAGC
CCTCCCGCCTGCAAGGCCCGGGATCCACCATGCCTCCATGATCCAAGGACCATA-------GAAGATGAGGTGGAC---C
G---GCGGCGCTG-------------------------GCGAGAGGCAAGGAAACCCAAGATGGGAG-------------
--------------------------------------------------------------------
>chr3D_1943
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---------------------TTTTTTTTT-A-AGAAAACTTTCGATCTATTCATC------------------------
--------------------------------------AACTGTCAAGGTAGTAC------AAAGAACACTAGAAATAAA
ATTTACATCCAGGTCCGTAGACCACCTAGCGACGACTACAAGCACTAGAGCGAGCCGAAGGCGCGCCGCCTTCATCGCCC
CTCTGTCATCGGAGCCGGGCAAACATTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGGCCC-CATAGGACC----
--AGCACACCAG-AACATCAACCGCCGCCGAT--GAAGAGAAGTATAGACCAGAAGGATCCAACCTGCAGACACACAGAC
GTAGCCGAACGAAGACCGGATCTAGTCGGATCCACCGAAGACAAATGCCAACCGGATCCGACGAGATCCGCCGGAGACAA
ACCTCCACACGCCTTCCGACGATGCTTGAAACATCACCAGGACGGGGGCTAGGCGGGGTGGACCTTATTCCATCTTCAAG
AAGCCGCCGCCGCCTC---ATCTTCTTGAGCATGGCACAAACCCT-AACAAAACTCAGAAAAGCATCT-AAAAACGAAGC
CCTTCCGCCGGCAAGGGCCGGGATCCACCGTGCCTCCATGATTCAAGGACCATA-------GAAGATGAGGCGGAC---C
G---ACGGCGCCG-------------------------GCGAGAGGCAAGGAAACCCTAGACGGGAG-------------
--------------------------------------------------------------------
>chr2A_1957
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------------------------------------AAACTTTTGATCTATTCATC------------------------
--------------------------------------AACTGTCAAGGTAGTAT------AAAAAACACTAGAAGTAAA
ATTTATATCTAGGTCTGTAAACTACCTAGCGACGACTACAAGCACTGGATTGAGCCGAAGGCGCGCCGCCGTCATCGCCC
CTCCCTCGTCGGAGCCGGGCAAACATTGTTGTAGTAGACAATTCGGAAGTCGTCGTGCTAAGGCCC-CATAGGACC----
--AGCACAACAG-AACAACAACCGCCGCCGAT--GAAGAGAAGCATAGATCGAAATAATCCAACCTGCAGACACATAGAC
GTAGAAGAACGAAGACCGGATCCAGAAGGATCCACCAAAGACAAACACCGACTGGATCTCACGAGATCCGTCGGAGACAT
ACCTCCACACGCCCTCCTTCGACGCTTGAAGCATCACCGGGACGGGAGCTAGGCGGGAAGAACTTTATTTCATCTTCAAG
AAGCCTCTGCCACCTC---ATTTTCTTGATCATGGCACAAAGCCT-AACAAAACTCAGAAAAATACCT-AAAAACGGAGT
CCTCCAGCCGGTAAGGGCGGGGATCCACCGCGCCTCCATGGTCCAAGGACCAAA-------GGAGACGAGGCAGAC---C
G---GCGGCGGTGCCAGCGTGAGGCAGG----------------------------------------------------
--------------------------------------------------------------------
>chr3B_1957
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------------------------------------AAACTTTCGATCTATTCATC------------------------
--------------------------------------AACTGTGGAGGTAGTAC------AAATAACACTAGAAGTAAA
ATTTACATCCAGTTTCGTAGACCACCTAGCGATGACTACAAGTACTGGAGCGAGCCGAAGGT--GCCGCCGTCATCGCCC
CTCCCTCGTCGGAGCCGGGCAAACATTGTTGTAGTAGACAATCGAAAAGTCGTTGTGCTAAGGTCC-CATTGGACC----
--AACGCACCAGAAACAGCAACCGCCGGCGAT--GAAGAGAAGTATAGACAGAAAGGATCCAACCTGCAGACACACGGAC
GTAGACGAACGAAGACCAGATCCAGTCGGATCCACCGAAGACAAATACCGACCGGATCCCACGAGATCCGTCGGAGACAA
ACCTCCACACGCCTTTCGACGATGCTTGAAACATCACTGGGACGG-GGCTAGGCGAGGAGGACCTTATTTCATCTTCAAA
AAGCCGCTGCTGCCTC---ATCTTCTTGAGCATGACACAAGCCCT-AACAAAACTCAGAAAAACATCT-AAAAACGGAGC
CCTCCCGTCGGCAAGGGCCGTGATCCACCGTGCCTCCATGATCCGAGGACCATA-------GAAGATGAGGCGGAC---C
G---CCGGCGCCG-------------------------GCGAGAGG----------------------------------
--------------------------------------------------------------------
>chr4A_1957
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------------------------------------AAACTTCCGATCTATTCATC------------------------
--------------------------------------AATTATGAAGATAGTAC------AAAGTACACTAGAAGTAAA
ATTTACATCTATGGCCGTAGACCACGTAGCGACGACTACAAGCACTAGAGCGAGCCGAAGGTTCGCCGCCGTCATCGCCC
CTTCCTCCTCGGAGCCGGAAAAACATTGTTGTAATAGACAGTCGGGAAGTCGTCGTGCTAAGGTCC-CATAGGACC----
--AACACACCAGA-ACAGCAACCGCCGCCAAT--GAAGAGAAGCATTGATCAGAG-AATCCAACCTGCAGACACATAGAC
TTAGACATACAAAGACCGAATCCAGACGAATCCACCGAAGACAAACACCGACCGGATCCCACAAGATCCGCCGGAGGCAC
ACCTCCACACGCCCTCCGACGACGCTTGAAGCATCACCGGGACGG-GGGCTAGGCGGGAAAACCTTATTCCATCTTCAAG
AAGCCGCTGCCGCTTT---GCCTTCTTTCTCATGGCACAAGCCCT-AACAAAATTTAGAAAAGCACCT-AAAAATGGAGC
CCTCCCGCCGGAAAGGGCCGGGATCCACCGCGCCGCCATGGTCCAAGAACCATATATAGGAGAGGAGGAGGACCAG---C
G---GCGGCGCCG-------------------------GCGAGAGGTAGGGAAACCCTAGA-------------------
--------------------------------------------------------------------
>chr7A_1981
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------------------------------------------GTCAAGGTAGTAC------AAAGAACACTAGAAGTAAA
ATTTACATCCAGGTCCGTAGACAATCTAGCGACGACTACAAACACTGGAGTGAGCCGAGGGCGCCCCGCCGTCATAACCC
CTCCCTCGTCGGAGCCGTGCAAACATTGTTGTAGTAGACAGTCGGGAAGTCGTCGTGCTAAGACCC-CATAGAACC----
--AGCGCAGCAG-AACAGCAACCGCCGCCGAC--GAAGAGAAGTATAGACCGGAAGGATCCAACCTGCAGACACACAGAC
GTAGACGAAGGAAGACCGAATCCAGTCAGATCCACCGAAGACAAACGCCGACCGGATTCCACGAGATCCATCGGAGACAA
ACCTCCACACGCCTTTCGAGGATACTTGAAACATCACCGGGGCGGGGGCTAGGCGGGGAGGACCTTATTTCATCTTCAAG
AAGCCGCCGCCGCCTCCTCGTCTTCTTGAGCATGACACAAACCCTAAACAAAACTCAGAAAATCATCT-AAAAACGGAAC
CCTCCCGCCGACAAGGGTCAGGATCCACCGTGCATCCATGGTCCAAGGACCATA-------GGAGATGAGGCGGAC---C
G---GCAGCGCCG-------------------------ACGAGAGGCAAGGACACCCTAGA-------------------
--------------------------------------------------------------------
>SNPs
SS---------------S------------------------SSSSSSSSSSSS-------S----S------------S
---SS---S--------------------S-S----------S-------------------------------------
-------------------------S----------------------------S--------------------S----
------------S-------S-S--------S------------------------------------------------
------S-------------------S---S-------------------------------------------------
--------------------------------------------------------------------------------
----------------SS--------------------------------------S-----------------------
-----------------------S----------------S---------------------------------------
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--------------------------------------------------------------------------------
-----------------------S-----------------------S--------------------S-----------
------------------------------------------------S---S---------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------S-----------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------S----------------------------------------------------------
-S----------------------------------S-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------------------------------S----------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------S---------------------------------------------------------------S---------
---------------------------------------S----------------------------------------
-----------------S-----------------------------------S--------------------------
---------------------------------------------------------S----SSS---------------
--------------------------------------------------S-----------------------------
-----------------------------------------S---------------S--S----S--------------
--------------------------------------------------------------------------------
------------------------------------S-----------------------------S---------SSSS
SS----------------------------------------------S----------------S--------------
--------------------------------------------------------------------------------
-------------------S----------------------S-------------------------------------
---------S-------------------------S----------------------------------------S---
-------------------------------------------------------------S------------------
-------------S-------------------------------------S----------------------------
--------------------S-----------------------------------------------
>forward_584
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----TGGCTACATGTTTCCCGGAG--------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
>reverse_2418
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------CGCGACACTAATCTCATGCG-------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------
