>input_sequence_71509
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---ATGGCTC---CCGCCGACCTTAGCTCGCGCGTCCACGCGGCCGCAGACGCCGCACCCAAGTCCCCCGCCGAGCCGAA
GCAAGAAGAGATCAGTCCCGCGGCGGCCGACGT------------GGAGGCGGGTGGCGGCAGCCCGGGCGGCGACGGCG
TCAACTACGTAGCCCGCGCGCAGTGGCTCCGCGCGGCCGTCCTGGGCGCCAACGACGGCCTCGTCACCGTGGCCTCCCTC
ATGATCGGCGTCGGCGCCGTCAACGAGTCCAGGCGCGCGATGCTCGTGTCGGGCGTCGCGGGGCTCGTGTCCGGCGCCTG
CAGCATGGCCATCGGCGAGTTCGTGTCCGTGTACGCGCAGTACGACATCGAGGTGGCCCAGATCAAGCGCACCCGCCGCG
ACGA------------------CGGCGACGGAGGCAGCGGCGACAGGAGTAGCCTGCCGAGCCCGACGATGGGGGCGGGG
GCGTCGGCCCTGGCGTTCGCGACGGGCGCCGCGCTGCCGCTTCTGAGCGGCGGGTTCGTGCGGACGTGGGCGGGCAGGGT
GGCGGCCGTGTGCGCGGCGAGCAGCGTCGGGCTCGCCGGCTTCGGCGTGCTGGGCGCGTACCTGGGCGGCGCGAGCGCGG
TGCGGTCCGGGGCCCGGGTGCTCGTGGGAGGGTGGCTCGCCATGGCCACCACCTACGGGGCGCTGAAGCTCTTCGGAGTG
CACGGTGCTTAG--------------------------------------------------------------------
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>chr6D_1_TraesCS6D01G221100
CACGCCGCTCTTTCCCAGTTCTGTGATGCATCAGGACGACGGTTACCAGTGTTACCACGCCGTTCTTTCCCAGTTTTGTG
GATTCGTCGAAAACTTGTGGGACGCGCCGGACGAACGCCTGTTTGGCGGTGCAGCGGCGCTCAAACAACCCGAGGTAGCG
CTACTCTTGCCGTTTTAACTCGAGTGGAAATGGAATCCCA-CCGGCCCGAAGTGTTCTCGAGCGCTTCCCAGATGTCGCA
CCACGTACTCTCAA------------------------------GGATCAATTAATAAATAAAGGAAAGAAAAAGA----
--AAACTCGCTGTTTTGATTTTTTGTGGACCCTGATTAGTGCAACACATGTCGCATGAAGCAATTCCGCCCTGACTTCTT
TTATGACAACTTTAGTTACCCGAGGATGGCAACTTTAGTTGTGAAGCATGACAAATTTCTACTCTCTCTGTTCCTAAATA
TTTGTCTTTCTAGAGATTTTAACAAGTGACTACATACGAAGCAAAATGAGTGAACCTACACTCTAAAATATGTCTACATA
CATTCGTATGTTGTAACCATTTGAAATGGCTAGAAAGACAAATATTTGGGAACGGACGGAGTATTTGAATGACAAGTTTT
AGTTTTTTTTTCGATGACAATTTTAGTTGTAAAAACATCAGGGCGGTGTTACTTCGTGCCACACGTGTGATACTTATTTT
TTTTAACACAACACGGATGCAAACGCTCACACATGCCTCGCTGTGTTTCTACGCTGGTTCGAATCAAAACTCTTTGCAGT
GCCCATATAATACCCGCCGAAGGCGTGCGACTCACAGAAAGTT-GATCTCAGTGTGTGGCCACGTATCATTCCTTCTTAT
TTGCAGTGCTAAAGAA--AAATATCCATGACGATGAGCTAGTTTCCCTATAAATACCCCGGCCGCCGCGCGTATGGTTAC
CACGATCCACTCCCCGTTCCCATCTGCACACAACAGTGCCAGAGCTCCTCCTC---TCATTGCACCTGCGGTGCGCCGCG
TCCATGGCTC---CCGCCGACCTTAGCTCGCGCGTCCACGCGGCCGCAGACGCCGCACCCAAGTCCCCCGCCGAGCCGAA
GCAAGAAGAGATCAGTCCCGCGGCGGCCGACGT------------GGAGGCGGGTGGCGGCAGCCCGGGCGGCGACGGCG
TCAACTACGTAGCCCGCGCGCAGTGGCTCCGCGCGGCCGTCCTGGGCGCCAACGACGGCCTCGTCACCGTGGCCTCCCTC
ATGATCGGCGTCGGCGCCGTCAACGAGTCCAGGCGCGCGATGCTCGTGTCGGGCGTCGCGGGGCTCGTGTCCGGCGCCTG
CAGCATGGCCATCGGCGAGTTCGTGTCCGTGTACGCGCAGTACGACATCGAGGTGGCCCAGATCAAGCGCACCCGCCGCG
ACGA------------------CGGCGACGGAGGCAGCGGCGACAGGAGTAGCCTGCCGAGCCCGACGATGGGGGCGGGG
GCGTCGGCCCTGGCGTTCGCGACGGGCGCCGCGCTGCCGCTTCTGAGCGGCGGGTTCGTGCGGACGTGGGCGGGCAGGGT
GGCGGCCGTGTGCGCGGCGAGCAGCGTCGGGCTCGCCGGCTTCGGCGTGCTGGGCGCGTACCTGGGCGGCGCGAGCGCGG
TGCGGTCCGGGGCCCGGGTGCTCGTGGGAGGGTGGCTCGCCATGGCCACCACCTACGGGGCGCTGAAGCTCTTCGGAGTG
CACGGTGCTTAGGCGCGCGCAAATTACGGGCA---GTATATATTTTGCCGCGGGAATAACCGAGCCAATGGATTA-TTAG
AAAACACGACTAGCAGAGTAGCGCTAGGTCTGTTGGCGCTTTGCATTACATGTAGTACTCCGTAGTACTGGTATAT----
--TATATTGCTGCTAACGTAACGTGCATGTGGCCGGTCGTACTACTACTAGCCAGGAGGTCGTATATTTGAACACAGATT
ATGAAGTTTGTTGTTGCTGGCCTATGTAAAGAATGTTGCATGTCATTCTGCATTCGGAAATGTCACAGCTTAAGTATAGT
TACAACTTGTCATGAGGTCATTCAAA-CATCTCAACCGTGTTGCAATGTTGTGAGAGTGTTGCTACACACACGACAAAGT
TGCGTCCGATGCATGGACAATCGTACGTGGCAGAGCCAACAGTGCGTGGTAGGCAATTGTTTGTTTTTTGGCTGTTGCTT
AGAGCTGTCGGGAGGAAGTATCGTTTCCAGGTCGTGCGGGCAAGTGTCGTCCGTAAAAGCAATTTTGATGTTGTGATTTG
CTAATGTGTTGTTGTAATGACGTCGTTCCTGTATGCCATTTCCTTCCATGGGTTTGGATTGGGCGGCGTGATGTGGCATG
GTTGTGCTACCCGAGTTCATCCTCAATCAACCCCGGTCTTTAGCCTCTCCGCCTTCATTGGCCATGTTAGGTGTGGATTT
CAGCTGTGTTGGAAGGGGTCTTAGTTTGCGCCTATAAGTGTCACAGAGATGGCGTCTACCTCTCGTATGGTGCCGCCTCT
TGATATTTCAGTTGCCTATTCGCCGTGCATGCTATAGTTTATTCCACGATGTTGGCTGCTAATCCGCGGTTGAGTTATGT
GTTCTTGGTGTAGTCGCGGTTGGTCGTTGTCATTGTGGTAACGATAGCTTAGTATGATAGAAAGGTTCGTTCTTTTCTGT
ATGCTCAATTTTGCAATGCCCTTTGATGGTGTTGGTGGCAAGCATCGAAACCAGAGCTAGCCG
>chr6B_168
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-------TGCCGTTTTTACTCTCGTGGAAATGGAATCCCA-CCGGCCCGAAGTGTTCTCGAGCGCGTCCCAGATGTCGCA
CCACGTTCAACCGAGAGAGAAG--AAACGTCGCACCACGTCTCTGGATCAATTAAT---------AAAGAAAAAGA----
--AAACTCGCTAT-------------------------------------------------------------------
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---------------------------------------------------------TTCGAATCAAAACTCTTTGCAGT
GCCCATATAATACCCGCCGAAGGCGTGCGACTCACAGAAAGTT-GATCTCTATGTGTGGCCACGTGTCATTCCATTTTTT
TTACAGTGCTAG---AACAAAAATCCATGACGATGAGCTAGTTTCCCTATAAATACCCCGGCCGCCGCGAGTGTGGTTAC
CACGCTCCAGTCCAGGTTCCCATTTGCACACAACAGTGCTAGAGCTCA---TC---TCATTACACCCGCGGTGTGTTGCG
TCCATGGCTCCCGCCGCCGACCTTAGCTCGCACGTCCACGCGGCCGCGGACGCCGCACCCAAGTCCCCCGCCAAGCCGAA
GCAAGAAGAGATCAGTCCTGCGGCGGCCGACGTTGACGACGACGTGGAGGCGGGTGGTGGCAGCCCGGGCGGCGACGGCG
TCAACTACGTAGCGCGCGCACAGTGGCTCCGCGCGGCCGTCCTGGGCGCCAACGACGGCCTCGTCACCGTGGCCTCCCTC
ATGATCGGCGTTGGCGCCGTCAACGATTCCAAGCGCGCGATGCTCGTGTCGGGCGTCGCGGGGCTCGTGTCCGGCGCCTG
CAGCATGGCCATCGGCGAGTTCGTGTCCGTGTACGCGCAGTACGACATCGAGGTGGCCCAGATCAAGCGCATCCGCGGCG
GCGA------------------C---------------GGCGACAGGAGCAACCTGCCGAGCCCGATGCTGGCGGCGGGC
GCGTCGGCCCTGGCGTTCGCGGCGGGCGCCGCGCTGCCGCTTCTGAGCGGCGGGTTCGTGCGGACGTGGGCGGGCAGGGT
TGTGGCCGTGTGCGCGGCGAGCAGCGTCGGGCTTGCCGGCTTCGGCGTGCTGGGCGCGTACCTGGGCGGCGCGAGCGTGG
TGCGGTCCGGGGCCCGGGTGCTGGTGGGAGGGTGGCTCGCCATGGCCACCACCTACGGGGCGCTTAAGCTCTTCGGAGTG
CACGGCGCTTAGGCGAGCGCAAATTACGGGCAGAAGTATATATTTTGCCGCGGGAATAACCGAGCCAATGGATTATTTAG
AAAACAAGACTAGCAGAGTAGCGCTAGGTCTGTTGGTGCTGCGCTTTACGAAAACATATCATGTAAG-------------
--TATATTGCTAC-----TAACGTGCATGTGGCCGGTCGTACTACTA---GCCAGGAGATCGTATATTTGAATACAGATT
ATGAAGTTTGCTGCTGCTGGCCTATGAAAAGAATGTTGCATGTCATTCTGCACTCGGAAATGTCACTGCTTATGTACAGT
CACAACTTGTCATGAGGCCATTCAAA-TATCTCAACGGTGTT--------------------------------------
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>chr6A_183
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----------------------AGTGGAAATGGAATCCCACCCGGCCCGAAGTGTTCTCGAGCGCC-CCCAGATGTCGCA
CCACGTTCAACTGAGAGAGAAATAAAACGTCGCACCACGTCTCTGGATCTATTAAT---------AAAGAAAAAAAAGAA
GGAAACTCGCTAT-------------------------------------------------------------------
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---------------------------------------------------------TTCGAATCAAAACTCTTTGCAGT
GCCCATATAATACCCGCCGAAGGCATGCGACACACAGAAAGTTTGATCTCCGTGTGTGGCCACATGTCGTTCCATTTTAT
TTGCAGTGCTAAAGAAAAAAAAAATCATCACGCTGAGCTAGTTTCCCTATAAATACCCCGGCCGCCGCGAGTGTGGCTAC
CACGCTCCAGTCCAGGTTCCCGTTTGCACACCTCAGTGCCAGAGCTCC---TCCTCTCACTGCACCAGTGGTGTGCTGCG
TCCATGGCTC---CCGCCGACCTCAGCTCGCACGTCCCCGCGGCCGCGGACGCCGCACCCAAGTCCCTCGCCAAGCCAAA
GCAAGAAGAGATCAGCCCTGCGGCGGCC------------GACGTGGAGGCGGGTGGCGGCAGCCCGGGCGGCGACGGCG
TCAACTACGCAGCGCGCGCGCAGTGGCTCCGCGCGGCCGTCCTGGGCGCCAACGACGGCCTCGTCAGCGTGGCCTCCCTC
ATGATCGGCGTCGGCGCCGTCAACGAGTCCAGGCGCGCGATGCTCGTGTCGGGCGTCGCGGGGCTCGTGTCCGGCGCCTG
CAGCATGGCCATCGGCGAGTACGTGTCCGTCTACGCGCAGTACGACATCGAGGTGGCCCAGATCAAGCGCACCCGCCGCG
GCCAGGACGGCGACGGAGGCAGC---------------GGCGACAGGAGCAACCTGCCGAGCCCGACGCTGGCGGCGGGG
GCGTCGGCCCTGGCGTTCGCCGCGGGCGGCGCGCTGCCGCTTCTGAGCGGCGGGTTCGTGCGGGCGTGGGCGGGCAGGGT
GGCGGCCGTGTGCACGGCGAGCAGCGTCGGGCTCGCCGGCTTCGGCGTGCTGGGCGCGTACCTGGGCGGCGCCAGCGCGG
TGCGGTCCGGGGCCCGGGTGCTCGTGGGAGGGTGGCTCGCCATGGCCACCACCTTCGGGGCGCTTAAGCTCTTCGGAGTG
CACGCTGCTTAGGCGCGCGCAAATTACGGGCATAAGTATATATTTTGACGCAGAAATAACTGAGCCAATGGATTAC-TAG
AACACAAGACTGGCAGAGTAGTGCTAGGTCTGTTGGTGCTTCGCTTTACGAAAACATACTACTGTATCATGTAGTGCTGA
TATATATTGCTGC-----TAACGTGCATGTGCCCGGTCGTACTACTAGA---CAGGAGATCGTATATTTGAACACAGATT
ATGAAGTTTGCTGTTGCTGGCCTATGAAAAGAATGTTGCATGTCATTCTGCATTCGGAAATGTCACAGCTTACGTACAGT
TACAACTTGTCATGGGGTCAATCAAAATATTTCAACGGTGTTGCAATGTTGT----------------------------
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>chr2D_1138
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---------------------------------------------------------------------------CGGCG
TCAACTACATGGCCCGCGCGCAGTGGCTCCGCGCGGCGGTCCTCGGCGCCAACGACGGCCTCGTCTCCGTGGCGTCCCTC
ATGATCGGCGTCAGCGCCGTGAACGACGCCGGCAAGACGATGCTCGTGTCGGGCCTCGCCGGGCTGGTGGCCGGCGCCTG
CAGCATGGCCATCGGCGAGTTCGTGTCCGTGTACGCGCAGTACGACATCGAGGTGGCCCAGATCAAGCGC----------
--GA------------------CGGTGCCAAGGGCAAGAAGGAG------AGCCTGCCGAGCCCGACGCTGGCCGCGCTC
GCGTCGGCGCTGGCGTTCGCGGTGGGCGCGCTCCTGCCGCTGCTGGCCGGCGGGTTCGTGAGGACGTATGGCGCCAGGGT
CGGGGCGGTGTGCGCGGCGACCACCGTGGGCCTGGCCGGCTTCGGCGCGGCGGGCGGGTACCTGGGCGGCGCGAGCGTGG
CCAGGTCGGGGTTCAGGGTCCTCCTTGGCGGGTGGGTCGCCATGGCTGTCACGTACGGCGTGCT----------------
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>chr2D_1138
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---------------------------------------------------------------------------CGGCG
TCAACTACATGGCCCGCGCGCAGTGGCTCCGCGCGGCGGTCCTCGGCGCCAACGACGGCCTCGTCTCCGTGGCGTCCCTC
ATGATCGGCGTCAGCGCCGTGAACGACGCCGGCAAGACGATGCTCGTGTCGGGCCTCGCCGGGCTGGTGGCCGGCGCCTG
CAGCATGGCCATCGGCGAGTTCGTGTCCGTGTACGCGCAGTACGACATCGAGGTGGCCCAGATCAAGCGC----------
--GA------------------CGGCGCCAAGGGCAAGAAGGAG------AGCCTGGCGAGCCCGACGCTGGCCGCGCTC
GCGTCCGCGCTGGCGTTCGCGGTGGGCGCGCTCCTGCCGCTGCTGGCCGGCGGGTTCGTGAGGCCGTATGGCGCTAGGGT
CGGGGCGGTGTGCGCGGCGACCACCGTGGGCCTGGCCGGCTTCGGCGCGGCGGGCGGTTACCTGGGCGGCGCGAGCATGT
TACGGTCGGGGTCCAGGGTCCTCCTGGGCGGGTGGGTCGCCATGGCTGTCACTTACGGCGTGCT----------------
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>chr2A_1138
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---------------------------------------------------------------------------CGGCG
TCAACTACATGGCCCGCGCGCAGTGGCTCCGCGCGGCGGTCCTCGGCGCCAACGACGGCCTCGTCTCCGTGGCGTCCCTC
ATGATCGGCGTCAGCGCCGTCAACGACGGCGGCAAGACGATGCTCGTGTCGGGCCTGGCCGGGCTGGTGGCCGGCGCCTG
CAGCATGGCCATCGGCGAGTTCGTGTCCGTGTACGCGCAGTACGACATCGAGGTGGCCCAGATCAAGCGC----------
--GA------------------CGGCGCCAAGGGCAAGAAGGAG------AGCCTGGCGAGCCCGACGCTGGCCGCGCTC
GCGTCGGCGCTGGCGTTCGCGGTGGGCGCGCTCCTGCCGCTGCTGGCCGGCGGGTTCGTGAGGCCGTATGGCGCCAGGGT
CGGGGCGGTGTGCGCGGCGACCACCGTGGGCCTGGCCGGCTTCGGCGCGGCGGGCGGGTACCTGGGCGGCGCGAGCATGT
TACGGTCGGGGTCCAGGGTCCTCCTGGGCGGGTGGGTCGCCATGGCGGTCACGTACGG----------------------
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>chr2B_1139
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----------------------------------------------------------------------------GGCG
TCAACTACATGGCCCGCGCGCAGTGGCTCCGCGCGGCGGTCCTCGGCGCCAACGACGGCCTCGTCTCCGTGGCGTCCCTC
ATGATCGGCGTCAGCGCCGTCAACGACGCCGGCAAGACGATGCTCGTGTCGGGCCTCGCCGGGCTGGTGGCCGGCGCCTG
CAGCATGGCCATCGGCGAGTTCGTGTCCGTGTACGCGCAGTACGACATCGAGGTGGCCCAGATCAAGCGC----------
--GA------------------CGGCGCCAAGGGCAAGAAAGAG------AGCCTGCCGAGCCCGACGCTGGCCGCGCTC
GCGTCGGCGCTGGCGTTCGCGGTGGGCGCGCTCCTGCCGCTGCTGGCCGGCGGGTTCGTGAGGCCGCGGGGCGCCAGGAT
CGGAGCCGTGTGCGCGGCGACCACCGTGGGCCTGGGCGGCTTCGGCGCGGCAGGCGGGTACCTGGGCGGCGCGAGCGTGG
CCAGGTCGGGGTTCAGGGTCCTCGTGGGCGGGTGGGTCGCCATGGCGGTCACGTACGGCGTGCTCTGGCTCTTCG-----
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSS---------S----S-------------------------------------------S--------------
------S-SSS-S-------------------------------------------SSSSSSSSS---------------
-----------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------------------
--------------------------------------------------S--------------S-------S-S----
---------------------S-----------------------------------------------S--S-------
----S----S---SS--------S------------------------SSS---------------S------S--S---
-------------------------------S---------------S------------------------S-------
------------------S-------------------------------------------------------------
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S--------------------------S-SSS----SS-----------S------------------S---S-------
---------------------S----------------------------------------------------------
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----------------------------------------------------------------S---------------
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------S-----------------------------S----S--S----SSSS-SSSS--SS-SSSS-SS---SSS----
-------------SSSSS-----------------------------SSS--------S---------------------
----------S---------------S---------------------------------------------S---S---
---------------------------S--------S---------------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_745
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-----ACACAACACGGATGCAAACG-------------------------------------------------------
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>reverse_2244
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---GCTGTCGGGAGGAAGTATCG---------------------------------------------------------
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