>input_sequence_71501
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------------------ATGACGAAAAATTCAAGGAGCATGAAATATTCGTCTGCTGAGCTCAGATCAACGCGTTATTT
AAGGCCCTTCAGCCATTGTAGTTTCAAGAGAGTTGCTACCCAGGAGCCAACATTAGCAGCAACGGAGAAATGTGCATGGA
AAGACGCGATCTGTCCAGTCTGCATCGAATGCCCGCATGATGCTGTCCTTCTACTCTGTTCATCTCATGACAAAGGCTGC
CGTCCATATGTATGTGGAACCAGCTTCCTCCACTCAAATTGTCTCGACCAACTTATAGAGTCATGCAGAAGCCCAGGAAG
CGGCGATGATCCAGGCTCGATAGTGCTCACATGCCCTCTTTGCCGTGGTGAGGTTAAGGGATATACACTGGTTGAGCCTG
CTCGGGAGCAGCTAAACAGAAACAGGAGGAGCTGCATGCAAGATGGCTGCTCATACAGTGGTACATACAGAGAACTCTGC
AGGCATGCACGAAAGAAGCATCCTTCGGCAAAGCCTCGTGCTGCGGACCCTCTACAGACTTACAGATGGAGGCGACTCAT
GTTCAGAACCACGTTGCAAGACATGATCTGCGCAACGAGCTCGTCAATGCTCCAAGAGCTATTGTCTGCCATGTTGCAGT
GGGAGGAGCTTCTGTCATCTGGTTGGCGTGGAGGTGATGATCACCTTGGTGCTGCTAATGATACTGCAGTGTAA------
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>chr5B_1_TraesCS5B01G233100
GGTGACATTAACCATTTTAATTTCTCCACTTCTTATAAGAGTTTGGGATTGTTGAATCAAACTGTATAGTACTCCCTCCG
TAAAGAAATATAAGAGCGTTTAGATCACTACTTTAGTGACCTAAACACTCTTATATTTCTTTCAGAGGGACTGCTAGAAC
A--------------------------------------------------------TAATTTCTCCACTTCTTATAAGA
GTTTGAGATGGTTGAATCAAACTGTATAGTACTCCCTCTGTAAAGAAATATAAGAGCGTTTAGATCACTACTCTAGTGAT
CTAAACGCTCTTATATTTCTTTACAGAGGGAGTACCTTATACACTCGTAGGAAAAATATTAGGGTATTAAAACAGCAAAA
GTTGGTGACAACCATTTAATTTCTCCACTTCTTATAAGACTTTGAGATTCTTGAAACAGATTG--TATAGTACCTTATAC
ACCTGTAGGAAAAATATCAGAGTAAAACAGCAAAAGTTTGTGACATTAACCATTTAATTTCTCCACAGCATCTTGTGTTG
CCTTTTCATATAGCTAGAATCAGACTATACATTTACTTGTACACGTGTAGGGAAAATATCAGGGCAAAAAAGCAAAAATG
GGTGACATCCACCCTTTAATCTCTTCGCAGCATCTTGTGTTGCCCTTTCATATAGCTAGAATCAGACTGTATAGTTCCTT
ATACACCTGTAGGAAAAATTATCAGTGTAAAACAGTAAAATGGGGTGACATCAACCATTTAATTTCTTCATAGCATCATG
TGTTGCCCTTTCATATATCAACCATCAATCAGATCTCAAGAGTGGAGCAAAAAAGATCCCTCTAAAAATATCCTTCTGGA
TACTTTTGGAGAGTCTAGGAAATGCAAAAAAGAACCTTTAACAACACCCTTTTCACCCTACAGTCAGCCGGTTCTTTTTA
ATTTTTATTTATTCAATGGACAATGTGAATTTTCTTGTGTTAGACTTTGTAAGACTTGATACGCTAAGCATGCTTATCTT
GTACTTGCAGTCCTCAAGATGACGAAAAATTCAAGGAGCATGAAATATTCGTCTGCTGAGCTCAGATCAACGCGTTATTT
AAGGCCCTTCAGCCATTGTAGTTTCAAGAGAGTTGCTACCCAGGAGCCAACATTAGCAGCAACGGAGAAATGTGCATGGA
AAGACGCGATCTGTCCAGTCTGCATCGAATGCCCGCATGATGCTGTCCTTCTACTCTGTTCATCTCATGACAAAGGCTGC
CGTCCATATGTATGTGGAACCAGCTTCCTCCACTCAAATTGTCTCGACCAACTTATAGAGTCATGCAGAAGCCCAGGAAG
CGGCGATGATCCAGGCTCGATAGTGCTCACATGCCCTCTTTGCCGTGGTGAGGTTAAGGGATATACACTGGTTGAGCCTG
CTCGGGAGCAGCTAAACAGAAACAGGAGGAGCTGCATGCAAGATGGCTGCTCATACAGTGGTACATACAGAGAACTCTGC
AGGCATGCACGAAAGAAGCATCCTTCGGCAAAGCCTCGTGCTGCGGACCCTCTACAGACTTACAGATGGAGGCGACTCAT
GTTCAGAACCACGTTGCAAGACATGATCTGCGCAACGAGCTCGTCAATGCTCCAAGAGCTATTGTCTGCCATGTTGCAGT
GGGAGGAGCTTCTGTCATCTGGTTGGCGTGGAGGTGATGATCACCTTGGTGCTGCTAATGATACTGCAGTGTAAATGGCC
AATACGGACTTTGTTGCTCTGTGATATGTG-ATTGCTCGCAGAAACATGAGAAAATGACGTGCTATTACCGCTAGCATAA
CCTCCTACAGAATTTGAGACCTGACAGAGTAGTGGTTGCCTGGATCTGTTCTCAGGGAGTATGATTGGCCTATATTCAGA
AGAAACA-TAAGGCTTTCATGGATTTAAAGGTGCTAGCAAAGTGGTGGAATGGTTTGAATAGTTATTTT--GGAAGTTCA
TGTCTGTCCATTTTATCTGGTGTGTGATGCACTGCTCTTGTGCATCCCTGTTGACTGTTGCATTGTATGAACATAACATT
TTCTTCTGAAATATGCAATTCAACTTGCTATTGATCTCCTATGGGCAGGTTGATAAGGTC---ACTTGGGCCAATATGTG
GATGTCGGAGATTCTTTTTCTTAAAAATGAAATTAGCAGGTATCCAATATCTTGAACGGGTATGAAAGTTACAAAAACCC
G-ATATGAACATGACATCCACTATTTTGAAGATGGATATGAT-CCGTGAAAAACTGAACGCTGGTCCTTGCTTTATTCCC
GAACCAGACTAGCCACTTTTCCATTATGTGACATTTGTCCTCTTTGTAAGCAATTCCAAGAGTTCGCGGTGCGTCTCATA
TATCATATGCCAATGACAATTCACGGGTACAACTTGGACGGAGGTTTTCATTTGGCTTGGGTTCCACAACTGTGAAAGTG
AATAGTTTCTTTCCTAAGCACAGGTGCTTATT------------------------------------------------
-------TGTATAGTAGACACTTAGGCACCGGTTTTCAAGGAAAAACCAATTTATTTTATAATCACCTCTCTAAGCACTT
TGCAGCGTATATGATGCT---TATTGCTTGGAAGATTTGAAAAGAGCATAACGGGTTCTCTATACTCTTGTTGCCCCAG-
--GGATGAAATAAAAGATAAAACTTGGCTTTGGACGATCGCGGGTGCAATGGGTTTGAGTAATCTTCTCCTCTTATCCGC
CTTGCGGTGGATTTTCTATTAGCT
>chr5D_1
GGTGACATTAACCATTTTAATTTCTCCACTTCTTATAAGAGTTTGGGATTGTTGAATCAAACTGTATAGTACTCCCTCCG
TAAAGAAATATAAGAACGTTTAGATCACTACTTTAGTGATCTAAACACTCTTATATTTCTTTACAGAGGGAGTACCTTAT
ACACCCGTAGGAAAAATATTGGGGTATTAAAACAGCAAAAGTTGGTGACAACCATTTTAATTTCTCCACTTCTTATAAGA
GTTTGAGATTGTTGAATCAAACTGTATAGTACTCCCTCTGG----------------GTTTAGATCACTACTCTAGTGAT
CTAAACGCTCTTATATTTCTTTACAGGGGGAGTACCTTATACACCCGTAGGAAAAATATTAGGGTATTAAAACAGCAAAA
GTTGGTGACAACCATTTAATTTCTCCACTTCTTATAAGACTTTGAGATTCTTGAAACAGATTGTATATAGTACCTTATAC
ACCTGTAGGAAAAATATCAGGGTAAAACAGCAAAAGTTTGTGACATTAACCATTTAATTTCTCCACAGCATCTTGTGTTG
CCCTTTCATATATCTAGAATCAGACTTTACATTTACTTGTACACGTGTAGGGAAAATATCAGGGTAAAACAGCAAAAATG
GGTGACATCCACCATTTAATTTCTTCGCAGCATCTTGTGTTGCCCTTTCATATAGCTAGAATCAGACTGTATAGTTCCTT
ATACACCCGTAGGGAAAATTATCAGGGTAAAACAGTAAAAGGGGGTGACATCAACCATTTAATTTCTTCACAGCATCATG
TGTTGCCCTTTCATATATCAACCATCAATCAGATCTCTAGTTCATTTATTTATATGAAGAGTGGA---------------
-----------------------GCAAAAAAGAACCTTTAACAACACCCTTTTCACCCTACAGTCAGCCGGTTCTTTTTA
ATTTTTATTTGTGCAATGGACAATGTGAATTTTCTTGTATTAGACTTTGTAGGAATTGATACGCTAAGCATGCTGATCTT
GCACTTGCAGTCTTCAAGATGGCCAAAAATTCAAGGAGCATGAAATATTCGTCTGGTGAGCTCAGATCAACGCGTTATTT
GAGGCCCTTCAGCCATTGTAGTTTCAAGAGAGTTGCTACCCAGGAGCCAACATTAGCAGCAACGGAGAAATGTGCATGGA
AAGACGCGATCTGTCCAGTCTGCATCGAATGCCCGCATGATGCTGTCCTTCTACTCTGTTCATCTCATGACAAAGGCTGC
CGTCCATATGTATGTGGAACCAGCTTCCTCCACTCAAATTGTCTCGACCAGCTTATAGAGTCATGCAGAAGCCCAGGAAG
CGGTGATGATCCAGGCTCCATAGTGCTCACATGCCCTCTTTGCCGTGGTGAGGTTAAGGGATATACACTGGTTGAGCCTG
CTCGGGAGCAGCTAAACAGAAACAGGAGGAGCTGCATGCAAGATGGCTGCTCATACAGTGGTACATACAGAGAACTCTGC
AGGCATGCACGAAAGAAGCATCCTTTGGCAAAGCCTCGTGCTGCGGACCCTCTACAGACTTACAGATGGAGGCGGCTCAT
GTTCAGAACCACGTTGCAAGACATGATCTGCGCGACGAGCTCGTCAATGCTCCAAGGGCTATTGTCTGCCATGTTGCAGT
GGGAGGAGCTTCTGTCATCTGGTTGGCGTGGAGGTGATGATCACCTTGGTGCTGCTAATGATACTGCAGTGTAAATGGCC
AATACGGACTTTGTTGCTCTGTGATATCTGAATTGCTCGCAGAAACATGAGAAAATGACGTGCTATTACCGTTAGCGCAA
CCTCCTAAAGAAGTTGAGACCTGACAGAGTAGCAGTTGCCCGGATCTGTTCTCAGGGAGTATGAGTGGCCTACATTCAGA
AGAAACA-TGAGGCTTTCATGGATTTAAAGGTGCTAGCAAAGTGGTGGAATGGTTTGAATAGTTTTTTTTTGGAAGTTCA
TGTCTGTCCATCTTATCTGGTGTGTGATGCACTGCTCTTGTGCATCCCTGTTGGCTCTTGCATTGTATGAACATAACATT
TTCTTCTGAAATATGCAATTCAACTTGCTATTGATCTCCTATGGGCAGGTTGATAAGGTC---ACTTGGGCCAATATGTG
GATGTCGGAGATTCTTTTTCTTAAAAATGAAATTAGCAGGTATCCAATATCTTGAACGGTTATGAAAGTTACAA-AACCC
G-ATGTGAACCTGACATCCACTATTTTGAAGATGGCTATGAT-CCGTGAAAAACTGAACGCTGGTCCTTGCTTTATTCCC
GAACCAGACTAGCCACTTTTCCATTATGTGACATTTGTCCTCTTTGTAAGCAATTCCAAGAGTTCGCGGTGCGCCTCATA
TATCATATACCAATGACAATTCACGGGTACAACTTGGATGGAGGTTTTCATTTGGCTTGGGATCCACAACTGTGAAAATG
AATAGTTTCTTTCTTAAGCATCGGTGCTTATT------------------------------------------------
-------T--------------------------------------------------ATAATCACCTCTCTAAGCACTT
TGCAGTGTATATGATGCT---TATTGCTTGGGAGATTTGAAAAGAGCATAACGGGTTTTCTATACTCTTGTTGCCCCAG-
--GGATGAAATAAAAGATAAAACTTGGCTTTGGACGATCGCGGGTGCAATGGGTTTGAGTAATCTTCTCCTCTTATCCGC
CTTGTGGTGGATTTTCTATTAGCT
>chr5A_1
GGTGACGTTAACCATTTTAATTTCTCCACTTCTTATAAGAGTTTGGGATTGTTGAATCAAACTGTATAGTACTCCCTCTG
TAAAGAAATATAAGAGCGTTTAGATCACTACTTTAGTGATCTAAACACTCTTATATTTCTTTACAGAGGGAGTACCTTAT
ACACCCGTAGGAAAAATACTAGGGTATTAAAACAGCAAAAGTTGGTGACAACCATTTTAATTTCTCCACTTCTTATAAGA
GTTTGAGATTGTTGAATCAAACTGTATAGTACTCCCTCTGG----------------GTTTAGATCACTACTCTAGTGAT
CTAAATGCTCTTATATTTCTTTACAGAGGGAGTACCTTATACACCCGTAGGAAAAATATTAGGGTATTAAAACAGAAAAA
GTTGGTGACAACCATTTAATTTCTCCACTTTTTATAAGACTTTGAGATTCTTGAAACAGATTGTATATAGTACCTTATAC
ACCTGTAGGAAAAATATCAGGGTAAAACAGCAAAAGTTTGTGACATTAACCATTTAATTTCTCCACAGCATCTTGTGTTG
CCCTTCCATATATCTAGAATCAGACTTTACATTTACTTGTACGCGTGTAGGGAAAATATCAGGGTAAAACAACAAAAATG
GGTGACATCCACCATTTAATTTCTTCGCAGCATCTTGTGTTGCCCTTTCATATAGCTAGAATCAGACTGTATAGTTCCTT
ATACACCCGTAGGGAAAATTATCAGGGTAAAACAGTAAAAGGGGGTGACATCAACCATTTAATTTCTTCACAGCATCATG
TGTTGCCCTTTCATATATCAACCATCAATCAGATCTCTAGTTCATTTATTTATATGAAGAGTGGA---------------
-----------------------GCAAAAAAGAACCTTTAACAACACCCTTTTCACCCTACAGTTAGCTGGTTCTTTTTA
ATTTTTATTTGTGCAATGGACAATATGAATTTTCTTGTATTAGACTTTGTAGGAGTTGATACGCTAAGCATGCTGATCTT
GCACTTGCAGTCTTCAAGATGGCCAAAAATTCAAGGAGCATGAAATATTCGTCTGGTGAGCTCAGATCAACGCGTTATTT
GAGGCCCTTCAGCCATTGTAGTTTCAAGAGAGTTGCTACCCAGGAGCCAACATTAGCAGCAACGGAGAAATGTGCATGGA
AAGACGCGATCTGTCCAGTCTGCATCGAATGTCCGCATGATGCTGTCCTTCTACTCTGTTCATCTCATGACAAAGGCTGC
CTTCCATATGTATGTGGAACCAGCTTCCTCCACTCAAATTGTCTCGGCCAGCTTATAGAGTCACGCAGAAGCCCAGGAAG
CGGTGATGATCCAGGCTCGATAGTGCTCACATGCCCACTTTGCCGTGGTGAGGTTAAGGGATATACACTGGTTGAGCCTG
CTCGGGAGCAGCTAAACAGAAACAGGAGGAGCTGCATGCAAGATGGCTGCTCATACAGTGGTACATACCGAGAACTCTGC
AGGCATGCACGAAAGAAGCATCCTTCGGCAAAGCCTCGTGCTGCGGACCCTCTACAGACTTATAGATGGAGGCGACTCAT
GTTCAGAACCACGTTGCAAGACATGATCTGCGCGACGAGCTCGTCAATGCTCCAAGGGCTATTGTCTGCCATGTTGCAGT
GGGAGGAGCTTCTGTCATCTGGTTGGCGTGGAGGTGATGATCACCTTGGTGCTGCTAATGATACTGCAGTGTAAATGGCC
AATATG------------------------------------------GAGAAAATGATGTGCCATTACCGTTAGCGCAA
CCTCCTACAGAAGTTGAGACCTGACAGAGTAGCAGTTGCCTGGATCTGTTTT-AGGGAGTATGAGTGACCTATATTCAGA
AGAAACATTGAGGCTTTCATGGATTTAAAGGTACTAGCAAAATGGTGGAATGGTTTAAATAGTTTTTTA--GGAAGTTCA
TATCTGTCCATTTTATCTGGTGTGTGATGCACTGCTCTTGTGCATCCCTGTTGACTGTTGCATTGTATGAACATAACATT
TTCTTCTGAAATATGCAATTCAACTTGCTATTGATCTCCTCTGGGCAGGTTGATAAGGTTAATACTTTGGCCGATATGTA
GATGTCGGAGATTCTTTTTCTTAAAAATGAATTTAGCGGGTATCCAATATCGTA------TATGAAAGTTCAAAAAAGAA
ACATATGAACCTGACATCCACTATTTTGAAGATGGCTAATGGGCCGTGAAAAACTGAACGCTGGTCCTTGCTTTATTCCC
GAACCAGACTAGCCACTTTTCCATTATGTGACACTTGTCCTCTTTGTAAGCAAGTACAAGAGTTCGCA---CGCGTCATA
TATCATATACCAATGTCATTTCACGGTTACAACTTGGATGAAGGTTTTCAATTGCCTTCGGATCCCCAACTATGAAAATG
AATAGTTTCTTTTCTAAGCATCGGTGCTTATTTGTATAGCAGACGCTTACTTAGGCACCAGTGCTCAAGGATAAATCAAA
TTATTTTT--------------------------------------------------ATAATCGCCCCTCTAAGCACCT
TGCAGTGTATATGACGCGGGATATTATTTGGGAGATTTGAAAAGAGCGGAACGCATGGGTTTTCCCCATCTATGCTAATT
GTGGATAAAATAAAAGACAAAAGTTGGCTTTGGACCATCGCAGGTGCAAAGGGTTTGAGTAAT-----------------
------------------------
>SNPs
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---------------------------------------S----------------------SSSSS--SSSSSSSSS-S
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---------S------------------------------SSSSSSSSSSSSSSSSS-----------------------
--------------------------------------------S-----------------------------------
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--------------------S-----------------------------------------------------------
--S---------S-------------S-------------------------------------S----S----------
-------------S------S-----------------------------------------------------------
-------S-----S-----------S--------------S-----------------------------S---------
-------------------------------------S--SSSSSSSSSSS-S-SSSSSSSSSS-SSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSS---------------------------------------------------------
----------S-S-------------------------S------------S--S-------------------S-----
-S----------S--------S-S-------------------------------S------------------------
S-------------------------------------------------------------------------------
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--------------------------------------------------S-----------------------------
---S----------------------------------------------------------------------------
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---------------------------------S----------------------S-----------------------
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---------------------------S-------------------------------------------S----SS--
------------S-------------------SS------------------------------S---------------
---------S------------------------------------------------------S---------------
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-----------------------------------------------------------S--------------------
----------S------------------------S--------------------------------------------
-------------------------------------------------------------------------S------
--------S-----------------------------S----------------------S---------------S--
--------------------SS----------------------------------------------------------
--------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------------------
-----S-------------------------S-------------------------S----------------------
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----S-------------------
>forward_563
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---------------------------------------------------------------CACAGCATCTTGTGTTG
CCT-----------------------------------------------------------------------------
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>reverse_2584
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-----------------------AGGCACCGGTTTTCAAGGAA-------------------------------------
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