>input_sequence_71494
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-------------------------------------------------------------------ATGTGCGGCGGCG
CCATCATCTACGACTACATCCCGGCGCACCGCCGCCGGGTGTCCACCGCCGACTTCTGGCCCGACGCC---GACCATTCC
GACGCCCACAGCGCCGCCCCCGACAAAGGTAAACT-----------CACCTCACAG-TATTCCCTTTGGCAACGGGCGTC
CGTGCGTAGGA-GTAAAACTCATTGGTTTGGTTTGGTTGCAGCGCCGCGCGCGAAGCGGGGGCGGACGAACCAGTACCGC
GGCATCCGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCCGTGAAGGGCGTCCGCGTCTGGCTCGGCAC
CTACCCCACCGCCGAGGCCGCCGCGCGCGCCTACGACCGCGCCGCGCGCCGCATCAGGGGCGCCAAGGCCAAGGTCAACT
TCCCCAACGAGATCCTGGTCGGCGCGCCCGCGCACGAGGCCCCGTGCACGAT---------------GGCGGCCGTGCTC
CCTTCCCCCAAGAAAGAGGA---------------GGAGCCCGCGGCGTGCTCCTGCGAGGAGGTGAAGGCGCTCTCCGA
GGAGCTGATGGCGTACGAGAGCTACATGAGCTTCCTCGGGGTCCCCTACATGGAGGGCGGGTCCGCGGCCGCGACCGCCC
CTGCCGCCGTCGGTGTCGCCGCCGAGGATGCACCGGCCGAGCTATGGAGCTTCGAGGACAGCTACTACCCGGGGCCTCTG
GGGCTCTGA-----------------------------------------------------------------------
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>chr5A_1_TraesCS5A01G314600
GTCCAGACCGGTCTGCGGACAAATACAAGACCGTGTTGGATGATAAGATATGTTCAAACGGCGTGATTCAGATATATTCG
AGCGGTTTGAGGTCGCGTTGGAGATGCTGTAGCATTCAGTGAAAGATGAGGACTCTTTGCATCGGTTGGCTTTAAAACCT
CCTATGGTTGTTGACAACAGAAGAAGCAAGAGGAACAAGTTGAATTTATGCATCTACATTTTCGCGTTATGAAAATTTAA
AATATACAAGACTGTATCTATGATTTTCTATGGCTTACATTGTCGCGTTCTAAAGAGAAAATGACTCTGCATATGCCCGC
ATAAAAAATCCCGACTCCGTCACTGTCGGTTGCTGTTGTTTTGAGATAATCTGCGGACTATTTACCTGCCTATTTACGTT
GAGATAAGTCAAGCACACCAAGATTGACTTGCATTCTGCGGCTAAAGTTACGTGGTTCTTGGCCATCGTGTTTAGTACTC
TGTAAACTAATATAAGACTGTTTAAATAACTAAAATAGTGATCTAAACATTCTTATATTAGTTTACAGAGGGAGTAGTAC
ACAGCTTCGTCTCGATCAGTCGTTCATCGCTGCGGCGTGCAGCGGTATCCACTTTCGTCTGCTCCAAGAATCAGAAAAAG
GAGCCGCGTCAGGTTTCAATTCGGCTAAACAGCGGCAAAGAAACGGTGTGCGGCCTCCGTTCAAAGAAGAGAAAACGATA
TGCCGCCTCCGTCCAGCG-------CGTATTCGTTCCTC-GATCCATTCCCTGGCTGGTGGCTGGCCCCCACAATTCCGA
CCTGTATATAAACACGGTGGCGGTAGCCTCATACCGTCCAACT------CAA--CCCAATCCAA----CGTCCCGTCCGC
CGCTGAAAGCACC---CCTCCCAGTCCCAGCAGCCGCCTTGCTCCCCTTGTTTCCACTACGCTTTGGATCCATCGATCGA
T----CGAGCCTTCTCCAGTTAGCCTTTCCCGCCACCTAAAAAGGCACCCCACGTCTCCATCCATCCATGTGCGGCGGCG
CCATCATCTACGACTACATCCCGGCGCACCGCCGCCGGGTGTCCACCGCCGACTTCTGGCCCGACGCC---GACCATTCC
GACGCCCACAGCGCCGCCCCCGACAAAGGTAAACT-----------CACCTCACAG-TATTCCCTTTGGCAACGGGCGTC
CGTGCGTAGGA-GTAAAACTCATTGGTTTGGTTTGGTTGCAGCGCCGCGCGCGAAGCGGGGGCGGACGAACCAGTACCGC
GGCATCCGGCAGCGGCCGTGGGGCAAGTGGGCGGCGGAGATCCGCGACCCCGTGAAGGGCGTCCGCGTCTGGCTCGGCAC
CTACCCCACCGCCGAGGCCGCCGCGCGCGCCTACGACCGCGCCGCGCGCCGCATCAGGGGCGCCAAGGCCAAGGTCAACT
TCCCCAACGAGATCCTGGTCGGCGCGCCCGCGCACGAGGCCCCGTGCACGAT---------------GGCGGCCGTGCTC
CCTTCCCCCAAGAAAGAGGA---------------GGAGCCCGCGGCGTGCTCCTGCGAGGAGGTGAAGGCGCTCTCCGA
GGAGCTGATGGCGTACGAGAGCTACATGAGCTTCCTCGGGGTCCCCTACATGGAGGGCGGGTCCGCGGCCGCGACCGCCC
CTGCCGCCGTCGGTGTCGCCGCCGAGGATGCACCGGCCGAGCTATGGAGCTTCGAGGACAGCTACTACCCGGGGCCTCTG
GGGCTCTGATTGTGTCGTGCTCGTAGTCTCCTGCCAGTCGCAGAAAACAGAGTCGATTCGCTCTTTCCCTTGTGTTTTGT
TGAATTCATTTTTTCTCTCT--TTGTTACTGTGGTGA--ATGCCTCAATGT-AATCTCACAAATTTTCCATGTAAATTTT
ATCAACGGAAAGCGCTCTTCCCCGACGCACGGGCGGTGCTGCTGCAACGCTGCATCCTTCTGTTGGACACGCGGCGTGGG
GAACTACTTCGGATCGTCTAGAGATGAACAGGTTGGCCAAGTGAGAGTGTGAGACGACTACTCCCACTGGAACTGCTGTG
TGCCTCTCCAACCTGTGGGCTGACGTTACCAGTGGCAGCCCTATTGGTTTCTTTATATATGAAAATCGGAGAGGAAAAGC
CTCTCTTTTGCTCAAAACAAAATAGTGTCAGCCCCTTTGTTTCCCACGGGCGGAACCCTGGGACTGGTGGGCCAGCCCAC
TATGCTAACTTTAGCTTCATCAAAAGTATTTGAAAAATGTTATAATCAGGCATTTGGAAAATGTTAAATTTGTATAAAAA
TGTTGACCATGTATTAAAAAATGTAAAAAAAATTGAATTTTTTTAGTAAAGCATTTTAAAAATGTGTAAAAAATGTTAAC
TAGGTATTCAACTTGCATTTGAAAAATGCTAACCAATGATTTTAAAAAATGTGTTTAGGATAAAATGTTGACCATTTATT
AATTAAATATTAATTTTTATTGGGAAAATTTTAAACATGTATTTAAAAATGTTATTGACATATATGAAAAAGTAAATCAA
AATCAAAATAAACTAAGAAAAAAGAAGGAAAAACTATAAAACAATGAAAGGCAAAAGGACAAACAATATGAGAAACGAAA
AGAAAAAAATGCAAAAGGAACTGGAAAAGAAAACAAAAAGCAAAAGAAAATGATAAAAGAGGAAACAGAAGAAAAGAGAA
GAAAAATAAAGAAAAGAAACACAGTGAAAACAAAAGAATAAACCAAAAAAACAG
>chr5B_581
CGATCAG-------------------------------------------------------------------------
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--------------------------TCGTTGCGGCGTGCAGCGGTATCCATTTTCGTCTGCTCCAAGAATTAGAAAAAG
GAGCCGCCTCAGGTTTC-----GGCTAAACGGCGGCAAAGAAACGATGTGCGGCCTCCGTTCAAATAAGAGAAAACGATG
TGCCGCCTCCGTCCAGCG-------AGTATTCGGTCCTTTGATCCATTCC----CTGGTGGCTGGCCCCCACAATGCCGA
CCTGTATATAAACCCAGTGGTGGTAACCTCATACCGTCCAACC------CAAATCCAAATCCAA----CGT-CCGTCCGC
CGCTGAAAACACC---CCTCTCAGTCCCACCTGCAGCCTTCCTCCCCTTGTTTCCACTCCGCCTTGGATCGATCCATCCA
T----CGAGCCTTCTCCAGTTAGCCTTTCCCGCCACCTAAAAAGGCACCCGAGGTCGCCGTCCATCCATGTGCGGCGGCG
CCATCATCTACGACTACATCCCGGCGCACCGCCGCCGGGTGTCCACCGCCGACTTCTGGCCCGACGCC---GACCATTCC
GACGCCTACAGCGCCGCCCCCGACAAAGGTAAACTACGTGCGCCCTCACCTCACAAATATTCCCTTTGGCAACGG-CGTC
CGTGTGCAGGA-GTAAAACTCGTTGTTC-----TGGTTGCAGCGCCGCGCGCGAAGCGAGGGCGGACGAACCAGTACCGC
GGCATCCGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCCGTCAAGGGCGTCCGCGTCTGGCTCGGCAC
CTACCCCACCGCCGAGGCCGCCGCGCGCGCCTACGACCGCGCCGCGCGCCGCATCAGGGGCGCCAAGGCCAAGGTCAACT
TCCCCAACGAAATCCTCGTCAGCGCGCCCGCGCACGAGGCCTCGTGCACGATGGCGGCTGCTCCGCCGGCGGCCGTGCTC
CCATCCCCCAAGAAGGAGGAGGAGGGGGAGGGGTTGGAGCCCGCGGCGTGCTCCTGCGAGGAGGTGAAGGCGCTCTCCGA
GGAGCTGATGGCGTACGAGAACTACATGAGCTTCCTCGGGGTCCCCTACATGGAGGGCGGGGCCGCGGCCGCCCCT----
-----------------GCCGCCGAGGAGGCGCCGGCCGAGCTATGGAGCTTCGAGGACAGCTACTACCCGGGGCCTCTT
GGGCTCTGATTGTACCGTG--------CTCGTGTCAGTTGCTGAAAACAGAGTCGATA-T---TTTCCCTTCTGTTCTGT
TGAATTCATTTTT-------------------------------------------------------------------
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>chr5D_591
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------------------------------TGCGGCGTGCAGCGGTATCCATTTTCGTGTGCTCCAAGAATTAGAAAAAG
GAGCCGCGTCAGGTTTG-----GACTAAACAGCGGCAG-GAAACGACGTGCGGCCTCGGTTCAAAGAAGAGAAAACGATG
TGCCGCCTCCGTCCGGTGTACGACTAGTATTCGTTCCTC-GACCCATTCC----CTGGTGGCTGGCCCCCACAATTCCGA
CGTGTATATAAACACAGCGGTGTTGGCTTCATACCGTCCAAGTCCAACCCAA--CCCAATCCAACGTCCGT-CCGTCCGC
CGCTGAAAACACCTCCCCTCCGACTCCCAGCAGCAGCCTTGCTCCCCTTGTTTCAACTACCCTTTGGATCCACCGATCGA
GCGAGCGAGCCTTCTCCAGTTAGCCTTTCCCGCCACCTAAAAAAGCACCCGAGGTCGCCGTCCATCCATGTGCGGCGGCG
CCATCATCTACGACTACATCCCGGCGCACCGCCGCCGGGTGTCCACCGCCGACTTCTGGCCCGACGCCAACGACCACTCC
GACGCCCACAGCACCGCCCCCGACAAAGGTAAACTACGTGCACCCTCACCTCACAA-TGTTCCCTTTGGCAGCAGACGTC
CGTGTGCAGGAAGTAAAACTCGTTGTTC-----TGGTTGCAGCGCCGCGCGCGAAGCGGGGGCGGACGAACCAGTACCGC
GGCATCCGGCAGCGGCCGTGGGGGAAGTGGGCGGCGGAGATCCGCGACCCCGTCAAGGGCGTCCGCGTCTGGCTCGGCAC
CTACCCCACCGCCGAGGCCGCCGCGCGCGCCTACGACCGCGCCGCGCGCCGCATCAGGGGCGCCAAGGCCAAGGTCAACT
TCCCCAACGAGATCCTCGTCGGCGCGCCCGCGCACGAGGCCCCGTGCACGAT---------------GGCGGCCGTGCTC
CCTTCCCCCAAGAAAGAGGAGG---------------AGCCCGCGGCGTGCTCCTGCGAGGAGGTGAAGGCGCTCTCCGA
GGAGCTGATGGCGTACGAGAGCTACATGAGCTTCCTCGGGGTCCCCTACATGGAGGGCGGGGCCGCGGCCGCCCCT----
-----------------GCCGCCGAGGAGGCGCCGGCCGAGCTATGGAGCTTCGAGGACAGCTACTACCCAGGGCCTCTG
GGGCTCTGATTGTACCGTGCTCGTACT--------AGTCGCACCAAACAGAGTCAACATT---TTTCCCTTCTGTTCTGT
TGAATTCATATTTTTTTTCAACTTGTAACTGTGGTATGCATGCCTCAACGTGACTTTTACGATTTCTCCATGTAAAT---
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSS---S---------------------S-------------------S--------
-----------------SSSSS-----------------------S---------------------------------S
-------------------------S------------------------SSSS--------------------------
---------------S----S--------------------------------------------------S--------
--------S-------------------------S---------------------------------------------
--------------------------------------------------S-S---S--S--------------------
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-------------------------------------------------------S-------------------S----
----S-S--------------S---S-SSSSSS-----------------------------------------------
-----------------------S-----------------------------S--------------------------
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----------------S---------------------------------------------------------------
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-------------------------------------------------------------S----------SS-SSSSS
SSSSSSSSSSSSSSSSS-----------S--S------------------------------------------------
-------------SS----------S----S--S-----------------------SSSSSS--------S----S---
--------------S-S--S------S--------SS-----------S----S-S-S--S-S--S-----------SSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_456
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------------------------------------TGCGGCTAAAGTTACGTGGT------------------------
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>reverse_1774
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-------------GTCGTGCTCGTAGTCTCCTG-----------------------------------------------
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