>input_sequence_71493
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------ATGGAGCTGC
TCAACGTGGTGCCGGCGGACTCCATGGCCTTCCCCCTCTACTCCCTCCCCGCGGCGGCCAACACCGTCGCCTCGCTCTTC
GCCTGGCTCGTCGCCGCCCTCGCCGCCGCCGTTGGCCTCTGGCGCATCCGCGCGGTCGGCTCCTCCAACAAACTACCCGT
CGCCGGCGCCCGCGCCCACGGCAGCACCCTCGTGGACGACAAGCAGCAGACGCAGGCCGTTTCGTCGCCTGCCGCTGACG
AGCCACGGCCCAGACTCACCGAGCCGGTGGAGCCGGCTTCCCCGATTAGCGAGCCGAGCTCGCCGTCCAAGGTCCGGTTC
ACGGCGTACTACGGCGGGGCCGGAGCTGACGCCGGCGACGACGGAGTAGTTGACGGCGTCAGGAAATGCGCCGACAGGGA
CGAGGACGACAACGGCGTGCCCTTCGTCGACGACCAGAGCGAGACGCTGCCGAGACGGACGGCGTCGATGAGGATCAGGT
CGGCGGCCTCGACGGCGGTGCCCTGCTGGGAGGAGAGGGAGATGGCCGTGAGGAGGCGGGGGGATCTGGGCTGGTACCGC
CACCTTGACATGGCGGTGCTCGACGGCACCGTCGTAAGGCTGTGGGACGGCGAGGTCACCGCGGCGGTGGCGTCGCCGAG
GGCGCGGCGGGGGAGGGCAGGATTGGAACTGCACCTGTCACTATAG----------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>chr5A_1_TraesCS5A01G211900
CCCTAGATCAAACCGTGATCGATTGGATAGAACGTTCAGACGTGGGGCAGCACGTTGATCACACGAGATGCTCGTGTCAT
GCCAAACCGATATACTCCGTATCTCTGGTGGTTTCTTTTCTCAAACCAAACACAAACACAGCCCTCGGCCGGTACGCCGA
AGTTGGAAGAACTTGTGGTTACGGACCGAAGAAGAGCGAAACGGTTTCCCAAAAATTGGAGCACAAACGCGGCACATCAC
ATATCACGATACGTA--------------------ACAAGAAAATAATTCTCGACCGATGTATCTCTCGGCCTACAGGAG
CCACGAAGTAGTACCAGCATATCTCAGGCAGGCCCACATGCAGCCGGTTCCGTCAACTTGCCATCTCGACCGCCGGTTGC
AAACCGCGCGCACGCATGCTGACGCTGGCTCAGGCTGCGGAAATGGGATATCTCGCAGCATCTCCCGGGCTCGATTCCGA
GCATCTCCCTCGCAGATCCCCGCCGATGCCAATTCCGGGCATCTTTGCCCGCACTATTACGTTTGACAGCTCCCATTAA-
CTGAAGATTGCCTCTTTTGCACGCACGCACCTCGACTTTTGCCG-------------------------GTTTTCTGTTT
ACAGGTCCAAGGATTTCTTTATTTTGGGAGACAATAC-----------------ACTTTTCAA-GAAAGTGGACGACAAA
TGCCTCGGCAGCTTTAAAATTTTAAGCCGAAAGGTTAAATAATAAAT-ATTCAAGGCTTTTTTTTTTCAGTAGCAACTGG
ATTGTGT--------TCCGCCTAGCACATTCTGCATGCATCAGTTTTGCAAAAAAAGTT-----------GTGTATCAGT
GCACTTGTTTACCTAATCCAACATCCACTAAATATA--------------------------------------------
--------------------------------------------------------------------------------
----TACTAAACTGCAAACTCCATCAT-----------------------------------------------------
------------------------------------------------------------------------------TT
GCATTCCGCCACCTATATATACACTTCCCACCCAAGCCCACCCTCCTCACTATCCTCATCATTCACAACAAACTCACAGA
CCAAGCCTCCTCCTT-CCTATCTTGAACAACCGCCGGGAGGCCTCCCCGTCGCCGTCG------CCGCAAATGGAGCTGC
TCAACGTGGTGCCGGCGGACTCCATGGCCTTCCCCCTCTACTCCCTCCCCGCGGCGGCCAACACCGTCGCCTCGCTCTTC
GCCTGGCTCGTCGCCGCCCTCGCCGCCGCCGTTGGCCTCTGGCGCATCCGCGCGGTCGGCTCCTCCAACAAACTACCCGT
CGCCGGCGCCCGCGCCCACGGCAGCACCCTCGTGGACGACAAGCAGCAGACGCAGGCCGTTTCGTCGCCTGCCGCTGACG
AGCCACGGCCCAGACTCACCGAGCCGGTGGAGCCGGCTTCCCCGATTAGCGAGCCGAGCTCGCCGTCCAAGGTCCGGTTC
ACGGCGTACTACGGCGGGGCCGGAGCTGACGCCGGCGACGACGGAGTAGTTGACGGCGTCAGGAAATGCGCCGACAGGGA
CGAGGACGACAACGGCGTGCCCTTCGTCGACGACCAGAGCGAGACGCTGCCGAGACGGACGGCGTCGATGAGGATCAGGT
CGGCGGCCTCGACGGCGGTGCCCTGCTGGGAGGAGAGGGAGATGGCCGTGAGGAGGCGGGGGGATCTGGGCTGGTACCGC
CACCTTGACATGGCGGTGCTCGACGGCACCGTCGTAAGGCTGTGGGACGGCGAGGTCACCGCGGCGGTGGCGTCGCCGAG
GGCGCGGCGGGGGAGGGCAGGATTGGAACTGCACCTGTCACTATAGAGATGGAGATCCTGATGTGTATAATGTGGTTAGG
ATTGTTGGACTGTGATTAGGTGGGTATGACAGTTTTGTCCTTCAATTTGGGCATGTCATATGTATGTGATGTGTATCATG
GAAGAGGGCCGAGGCTG-AAAAATGAACAGCCTTCGTCTCAGCTCTCAGGAGAAACGAAAATTTGGCAAATAATGGCAGA
GTATTCTTGCTCAGTTCCCTTCCCTGCTTCCATTTCCATGGCTTGCACTGCTCTCCATTACATCCTTCTGACCC-TTTTG
TTCTCTCGGTTTATTTATCTGACGAACACCGC-TTTCAAAATAAATTCATG------CTTAGCTTCAGTTCTCCGGTGGA
TGAGTTATCTTTGTAATAACAATTCTAAAAGAA--AAAAATCAAGAATGTTGCCGCCCTGCCCTTGCAAAAATTGTACTA
AGAAATACTCTCTTGTATACTTTATCTGGTGCACAATTTTTATATCTTTATTTATGGAGTTTTGCAGGTCATTCCCAGCA
TCCATGATTTAGTTTTTCACAAACTTGGAAAAATTCATATGCCTTAACTCAATATGAGATGCAGGCTCAACCGAATGCAG
AAAACTTGTGTTCTCAGTTCTCACAAATCACAATGGGCTCCTGGGTTTTAAAAGAGTTCCATATGATTTGTAGAGGATTT
GGATCCTTAGGAATTTAGGACCACTTTGCACACTATTTTGGAGGAGAATTTTCATCCACTCAAACCTTTTT-TATAATTA
TTTTTTGTTTTTTCTA-TGACATTAAACGCTATTTGATCCAAATTCCTGTGGTTTTCTAATCCTATGTTTCTTATGTTTC
CGCATTTCATATGAAATGCGGA--TTTTTTTAGCCAACTACAAGTATATAACCAATGCCTATTAGTTAAGTGACCCATGC
GGCATTGTCGCAGACAGTAATGCTATATAGTAATCACAGTGATGTGAAGATGATGCCGGCTTATCAATTGCACATTTATT
TAATAAAGTTGCTAAATGATT
>chr5D_46
GGCG---------------------------------------------GCACGTTGATCACACGAGATGCTCGTGTCAT
GCCAAAAACGATA------TATCTCTGGTGGTTTCCTTTCTCAAACCAAACACAACG-CAGCCCTCGGCCGGTACGCCGA
AGTCGGAAGAAATTGTGGTTACGGACCGAAGATGAGCGAAACGGTTTCCCAAAACTTCGAGCACGAACGCGGCACATCGC
ATATCACGATGCCTATTTATCGACCGGCCGTTTCGACAAGAAAATAATTCTCGACCGATATCTCTCTCGACCTACAGGAG
CCACGAAGTAGTAGTGCCATATCTCTGGCAGGCCCACATGCAGCCGGTTCCGTCAACGAGCCATCTCGACCGCTGGTTGC
AAACCGCGCGCACGCATGCTGACGCTGGCTCTGGCTGCGGAAATGGGATATCTTGCAGCATCTCCCGAGCTCGATTCCGG
GCATCTCCCGAGCAGATCCCCACTGATGCCAATTCCGGGCATCTTTCCCCGCATTATTACGTTTGACAGCTCCCATTAAA
CTGAAGCGTTTCCCTTTTGCATGCACGCACCTCGAGTTTACATGTTTTTTTCTTGAGGTAGCTTAGTTCGTTTCTTGTTT
ACAGGCCCAATGATTTCTTTATTTTGGGAAACGATATACTCCCTCCTAAAGAAATATAAGAGCGGAAAGTGGCCGAAAAA
TGCCTCTCCGGC-TTAAAATTTGAAGCGGAAAGATTGAGTAATTAAAGATTCAAGGCTATAA-TTTTCAGTAGCTAGTGG
ATTGTGT--------TCTGCCTAGCACAATGTACATGTATCATTTTTGCAAAAAGTAAAATAGAA-AATCTTGTATCAAT
GCACTTGTTTACCTAATCCTACATCTCCACTAAGCATATACTCCCTTCATCTCGAATTGCTTGTCTGAGATTTGTCTAGA
CACGGATGTCTAGATATATCTGTATGTAGACAAATTTAAGAGAAATAATTTGAGGAGGTTATATAAAATTACAAAAGCTT
TCAGTACTAAACTGCAAATTCCATCAATGATTGTCTGAGATTTGTCATATACACGGATGTCTAGATATATCCGTATATGG
ACAAATTTAAGACAAATAATTTGAGGAGGTTATATAAAATTACAAAAGCTTTCAGTACTAAACTGCAAATTCCACCAATT
CCACTCCGCCACCTATATATACACTTCCTTCCCAAGCCCACCCTCCTCACTATCCTCATCATTCACAACAAACCCAAAAA
CCAAACCTCCTCCTT-CCTATCTTGAACAACCGCCGAGAGACCTCCCCGTCGCCGTCG------CCGCAAATGGAGCTGC
TCAACGTGGTTCCGGCGGACGCCATGGCCTTCCCCCTCTACTCCCTCCCCGCGGCGGCCAACACCGTCGCCTCGCTCTTC
GCCTGGCTCGTCGCGGCCCTCGCCGCCGCCGTCGGCCTCTGGCGCATCCGCGCGGCCGGCTCCTCCAACAAACTACCCGG
CGCCGGCGCCCGCA------GCAGCACCCTCTTGGACGACAATCAGCAGCCGCAGGCCGTTTCGTCGTCTGCCGCCGACG
AGCCACGGCCCGCACTCGCCGTGCCGGTGGAGCCGTCCTCCCCGATTAGCGAGCCGAGCTCGCCGTCCAAGGTCCGGTTC
ACGGCATACTACGGCGGGGCCGGAGCTGACGATGGG---------GTAGTGGACGGCGTCAGGAAATGCGCGGACAGGGA
CGAGGACGAGGACGGCGTGCCCGTCGTCGACGACCAGAGCGAGACACAGCCGAGACGGACGGCGTCGATGAGGATCAGGT
CGGCAGCCTCGACGGCGGTGCCCTGCTGGGAGAAGAGGGAGATGGCCGTGAGGAGGCGGGGAGATTTGGGCTGGTACCGC
CACCTTGACACGGCGGTGCTTGACGGCACCGTTGTAAGGCTGTGGGACGGCGAGGTCACCGCGGCGGTGGCGTCGCCGAG
GGCGCGGCGGCGGAGGGCAGGATTGAAACCGCGCCTGTCACTATAGAGATG----------TGTGTATAATGTGGTTAGG
ATTATTGGATTGTTATTAGGTGGGTATGACGATTTTGTCCTTCAATTTGGGCATGTCATATGT-----ATGTGTATCGTC
TAAGAGGGCCGAGGCTGAAAAAATGAACAGCCTTCGTCTCAGCTCTCAGGAGAAACGAAAATTTGGCAAATAATGGCAGA
GTATTCTTGCTCAGTTCCCTTCCCTGCTTCCATTTCAATGGTTTGCACTGCTTTCCGTTACATCCTTCTGACCCTTTTTG
TTCTCTCGGTTTATTTATATCTGAGGAACAACGTTTCAAAATAAATTTATACTCCTACTTAGCTTCAGTTCTCCGGTGGA
TGAGTTATCTTTGTA---ACAATTCTAAAAGAAGAAAAAATCAAGAATGTTGCCGCCCTGCCCTTGCAAAAATTATTCTA
AGAAATACTCTCTTGTATACTTTATCTGGTGCATAATTTTTATATCTTCATTTATGGAGTTTTGCAGGTCATTCCCAGCA
TCCATGATTTTATTTTTCACAAACTTGGAAATATTCATATGCCTTAACTCAATATGAGATGCAGGCTCAGCTGAATGCAC
AAAACTTGTGCTCTCAGTTCTCACAAATCACAATGGGCTCCTGGGTTTTAAAGGAGTTCCATAGGATTTGTAGAGGATTT
GGATCCTTAAGAATTTAGGATCACTTTGCACACTATTTTTGAGGAGAATTTTCACCCACTCAAACCTTTTTGTATAACTA
TTTTGTTTTTTATTCTGTGACATTAAACGCTATTTGATCCAAATTCATGTGGTTTTCTAATCCTATGTTTCTTATGTTCC
CGCATTTCATATGAAATGAGGATTTTTTTTTAGCGAACTACAAGTATATAACCAATGCCTATTAGTTAAGTGACCCATGC
GGCATTGTCGCAGATAATGCCATA------TAATCATAGTGATGTGAAGACGAAGCC-----------------------
---------------------
>chr5B_288
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------CGGCCTACAGGAA
CCGCGAAGTAGTACCAC---ATCTCAGGCAGGCCCACATGCAGCCGGTTCCGTCAACGAGCCATCTCGACCGCTGGTTGC
AAACCGCGCGCACGCATGCTGACGCT------GGCTGCGGAAATGGGATATCTCGTAGCATCTCCCGGGCTCGATTCCGA
GCATCTCCCGATCAGATCCCCACTGATGCCAATTCCGGGCATCTTTGCCCGCACTATTACGTTTGACAGCTCCCATTAA-
CTGACGATTTTCTATTTTGCATGTACGCACCTCGACTTTAGCTG-------------------------GTTTTCTGTTT
ACAGGTCTAAGGATTACTTTATTCTGGGAAACGATTACATATGTATGTATGCAAACTTTTCAA-GAAT-TGGACGAAAAA
TTCCCTTAAAAAAAGAATTCACATGTATGA--------------------------------TTTTTCAGTAGCTAGTGG
ATTGTGTATTTGTGTTCTGCCTAGCACACTGCACATGTATGATTTTTGCAAAAAAGATGATTGAAGAAACGTGTATCAGT
GCACTTGCTTACCTAACCCAACATCCACGAAATATATGGATTTTTTAGGGGGGAGTGTATAG------------------
-----------------------------------------------------------------AAATTACAAAAGCTC
TCGGTACTAAACTGCAAACTCCATCAT-----------------------------------------------------
------------------------------------------------------------------------------TT
CTATTCCGCCATCTATATATACACTTCCTACCCAAGCCCACCCTCCTCACTATCCTCATCATTCACAACAAACCCAAAAA
CCAAACCTGCTCCTTCCCTATCTTGAACAACCGCCCGGAGACCTCCCCGTCGCCGTCGCCGTCACCGCAAATGGATCTGC
TCAATGTGGTGCCGGCGGACGCCATGGCCTTCCCCCTCTACTCCCTCCCCGCGGCGGCCAACACCGTCGCCTCGCTCTTC
GCCTGGCTCGTCGCGGCCCTCGCCGCCGCCGTCGGCCTCTGGCGCATCCGCGCGGTCGGCTCCTCCAACAAACTACCCGA
CGCCGGCGCCCGCA------GCAGCACCCTCGTGGACGACAAGCAGCAGATGCAGGCTCTTTCGTCGCCTGCCGCTGACG
AGCCACGACCCGCACGCACCGTGCCGGTGGAGCCGGCTTCCCCTATTAGCGAGCCGAGCTCGCCGTCCAAGGTCCGGTTC
ACGGCGTACTACGGCGGGGCCGGAGCTGACGCCGGCAACGATGGAGTAGTGGATGGCGTCAGGAAATGCGCGGACAGGGA
CGAGGACGAGGACGGCGTGCCCGTCGTCGACGACCAGAGCGAGACGCTGCCGAGACGGACGGCGTCGATGAGGATCAGGT
CGGTGGCATCGACGGCGGTGCCCTGCTGGGAGGAGAGGGAGATGGCGGTGAGGAGGCGGGGAGATTTGGGCTGGTACCGC
CACCTTGACATGGCAGTGCTCGACGGCACCGTCGTAAGGCTGTGGGACAGCGAGGTCACCGCGGCGGTGGCGTCGCCGAG
GGCGCGGCGGGGGAGGGCAGGATTGGAACTGCACCTGTCACTATAGAGATGGAGATCCTGATGTGTATAATGTGGTTAGG
ATTATTGGACTGTGATTAGGTGGGTATGACAGTTTTGTCCTTCAATTTGGGCATGTAATATGT-----ATGTGTATCATC
GAAGAGGGCCGAGGCTGAAAAAATGAACAGCCTTCGTCTCAGCTCTCAGGAGAAATAAAAATTTGGCA---AATGGCAGA
GTATTCTTACTCAATCTCCTTCCCTGGTTCCATTTTCATGGTTTGCACTGCTTTCTA-TACATCCTTCTGACCCTGTTCT
TC------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>SNPs
SS-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------
------SSSSSSSSSSSSS----------------S-------------------SSS----------------------
---S-------S--------------------S---------------------S--S------S-------------S-
----------S-S----------------------------------------------S-S------------------
----------------S----------------------------------------SS--------------S------
-------------------------------S------------------------------------------------
---------SS----------S-S--------------------------------------------------------
---------SS----------S-----------------S--S-------------------------------------
-----------------------------S--S---S---------------------------------------S---
------SS----S---------S----S-----S--S-S----S--S-----------S-SS------------S-S---
-----------------S----------S-S-S----S----S------------SS-S---------------------
----------------------------S---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
S---------------------------S--------------------------------------------S--S-S-
----S-----------------------------------S---------------------------------------
--------------------S-----------------------------------------------------------
--------------S-----------------S----------------------------------------------S
-------------SSSSSSS------------------------------------------------------------
-----------SS--------S----------------------------------------------------------
------------------------------------S----S--------S--------------------S--------
---------SS-----------S---------------------------------------------------------
-------------------------------------------------------------S---S--------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---S-----------------------------------------------------------SSSSS-----------S
--------------------------------------------------------------------------------
-----------------------------------------S----------S---------------------------
------------------S-SSSSSSS--SS----------------S--S-----------------------------
---------------SSS--------------------------------------------------------S-S---
---------------------------------S--------------S-------------------------------
----------SS-------------------S-------------------------------------S-S-------S
----------S-----------------------------------------S----------S----------------
---------S----------S------------------S--------------S----------------------S--
----S-S----S-SSS------------------------------S-------------------------------S-
------------------S---------------S---------------------------------------------
--------------S-S-SSSSSSSSSSSS------S-------------S--S---SSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS
>forward_829
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------TTGTGTTCCGCCTAGCACAT---------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------
>reverse_3014
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------TGCCGGCTTATCAATTGCAC-------
---------------------
