>input_sequence_71481
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----------------------------------------ATGGCTCCGAGCTGCTGGTTCTTCTGGGCGCTGTGGCTAC
CTATGATGCTCGCGGTCGCGGCGGCCAAG---GAGCAGCAAGGGGAAGGATGCTCGGATTCGGCCAAGAGATGCAGCAAC
GTGACCATCTCCCACCCGTTCTGGCTCAGGCATAACGAGTTGGAGCGAGCGTGTGGTGTCCCAG------ATTTCGAGGT
CACGTGCTTTCACAACACTACTCCAGTTCTACGGAGCTCTGTGCCCATCGGCTACGGCCTCTCTATCATCGATATCGATT
ACGGGCAACGCAGCCTGCGAGTCGCTGACGCAGGCAAGCTGGAGCTGTTG------TCCAACGACTGCC---TGCCGGTC
TGGAACACCTCGGCCAAGGTCGGCGCCAGCTTCATGATCGCCCCCGACAACCTGAACCTCGTCCTGTACCGTTGCACGGA
GGCCGCGTCGGCCGTGGCCGTGGCGCGGCGTGACAGGGA------GCTGGTTCGGACGAGGATGAAGTGCGGTGACGGCA
GCGAGGTGTTGGTCCGCGCGGGAGGGCGG---TACGGCGAGACGGGCGGCTACGGCGGCTAC---GAGGGCTGCGACGCT
GCCGTCACGCCGGTGCTGGGCGCGCACGGCA---AGGCGAACGCGAGCGACTACGAGCGGCTCATCAACTATGGCTTCCT
CCTGACATGGAAGCCCCCG------CGTAAGTTGGCCCGTCAAATCATCTCTTGA-------------------------
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>chr3D_1_TraesCS3D01G045200
TTTTGAACCTTAGCCCTAGGCCATGGCTATCTTAGAAAATCCCTTGGTCGTGGCCTTCTGATGCCTCTTAATAAAAAGAT
TTTCCAAACACTGGCAAATCTAAATAGCATATCTATCTGAATAAAATGTGTTTACTCTAGGTTTGAATTGGAATTCTCCC
TTGCAATTTAGCTACAATCTGTGACAACAAGTCATGAATTAGAATTCTCACGATGGTGGAGTTTGGTTTGCGCAGCCCAC
GAACCGTGTCTTGAACCTTAGCCCTAGGCCGTGGCTATCTAAAAAATAAAACCACCCCTTGTCGTGGCCTTACAATGCCT
CTGAAATAAAAAGGATTTTCAAACACCGGCAAATCTAGACTACATACCTATCTGAATAAAATGTGTTCCGTCAAAAAGAT
CTGAATAAATTTTGTGTACTCTAGGTTTGAACAGGAATTTTCCCTTGCAAAAAAGAAATTTGCATGCAATTTCAGTGAAA
CGCAACCCAGTGACTGATCGGGCTATAGAACCTTCTTTTCTATTGGATACAGTAATCAGTAACCTGTCATCCCTTAAGAA
AACAAGTAACCTGCCAAGTGTGAAGGTTGTACCAAGATTAGAGTCTGGCCAGATAGCAGACAAAGAGCACAAAGTTGCCG
CAACCGAAAAAACCCAGCCTAAGCAGCTTGTTCAAATCACATCACATGGTCAGAGAGGTCATGGTCATGGATTAATTACC
CCGTCTATTTTTTCTCCGCAAAGAAAAAAAAATTACCCCGTCAAAGGGTAACCCAGAAATTTAATATGTCATGGCTCTAC
TAGTCCAAGTGTTCACTGGGGGCGTTTCAGTATATGTGGACGATGATCATTTGCCCCAGTTTTCCAGTCAAATGTTCGTC
GCTCACTCTGCCCTCCCATATATATATCTTTGGTTCTTCAGTTCTTCAGACCGCGGCACCCTCTCTAGCCTATGACCACC
CTTCCATCCACGGAGCTCCTTTGCTAAATCTTCCACTCCCATGGCTCCGAGCTGCTGGTTCTTCTGGGCGCTGTGGCTAC
CTATGATGCTCGCGGTCGCGGCGGCCAAG---GAGCAGCAAGGGGAAGGATGCTCGGATTCGGCCAAGAGATGCAGCAAC
GTGACCATCTCCCACCCGTTCTGGCTCAGGCATAACGAGTTGGAGCGAGCGTGTGGTGTCCCAG------ATTTCGAGGT
CACGTGCTTTCACAACACTACTCCAGTTCTACGGAGCTCTGTGCCCATCGGCTACGGCCTCTCTATCATCGATATCGATT
ACGGGCAACGCAGCCTGCGAGTCGCTGACGCAGGCAAGCTGGAGCTGTTG------TCCAACGACTGCC---TGCCGGTC
TGGAACACCTCGGCCAAGGTCGGCGCCAGCTTCATGATCGCCCCCGACAACCTGAACCTCGTCCTGTACCGTTGCACGGA
GGCCGCGTCGGCCGTGGCCGTGGCGCGGCGTGACAGGGA------GCTGGTTCGGACGAGGATGAAGTGCGGTGACGGCA
GCGAGGTGTTGGTCCGCGCGGGAGGGCGG---TACGGCGAGACGGGCGGCTACGGCGGCTAC---GAGGGCTGCGACGCT
GCCGTCACGCCGGTGCTGGGCGCGCACGGCA---AGGCGAACGCGAGCGACTACGAGCGGCTCATCAACTATGGCTTCCT
CCTGACATGGAAGCCCCCG------CGTAAGTTGGCCCGTCAAATCATCTCTTGATCGATCCAGTGTGTGGCTAAGCTAG
GACGGACGTACGCCCAGTACGTGCCTTGCCTTTGCTTGGATTTCCCTTACCCGATCAAGCAAGCGATCCATCGTGCCACT
CGATCTCTTGTTTGAGGGTAAGGCCGTGGACCCGTAGTAGTCGTCGTGCCCAGTTGTGGCGGGCACTTCCACCTTCCTGG
TCGCTGAGTACTGTGCGTGCGCCCACTTGACCATAGCCACTGCATCTTGGGCGGCAGGCATGTTGGCATTGCGCAAGTTA
GTGCCAGTACCCTTTTTATCTTCCGTAGGCTGTCGGGTAGATGCATTTCATCCTTGTGTGCTCTAGCCGGCTGACATCCA
CTTGTTTTAGTGTGACGCGTGGATTTCACAAAGAAAAGGGCCCGGCTACCTTTTTACCTGGGTGATCTTTGTAGCATTCG
TCTGCGCCTGCCCATGTACTACCTAGATCGATTTTTCTCGCTTTCAGTTCACAGCCCGGCCGGGTGCTTTTCGACGACAC
TGCTTGCACGATTTGTGCACGATGAGGCAGCTGGGCCTTTCATCATGTCTGATTCATGGACTAGCACTAGTAGAAAAAAA
GGCTTCCATACGCCCCCATTAGTCCCCAAAATAATCGAACCGCGACCAAAGGGGTCTTTAGTCGCGGTTCGGGAGGAGAC
CCGCGACCAACTATCTGGGCCCAGCGCGCTCGGTCGACAGCTGGCGGACGGGAGGGGCTTTAGTCCCGGTTGGCCTGGCC
AACCGGGACTAAAGGTCCTCAGGCTGGCCCGAAGTCCTTTAGTCGCGGTTGGCCAGACCAACCGGGACTAAAGGTTAGCC
CTTTAGTCGCGGTTGGCCAGACCAACCGGTACTAAAGGGCCCATCAAACTCTACCCCCCTGGACCGCCTTTTCAGTTTTA
GAAAAACCAAAAGAAAATGATGCAAATGTCAAAAAAATAAAATAAAATAAGTTTCTCATGTGATATGTGGTCTAGTTGTT
GGGAAAATTAACAAA
>chr3A_986
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-------------------------AAATCTTCCACTCCTATGGCTGCGAGCTGCTGGTTCTTCTGGGCGCTG-------
-----ATTCTCGCGGCCGCTGCCGCTGTCGCCGAGGAAGAAGTGGAAGGCTGCTCGGGCTCAGCCAGTAGGTGCGGCGGC
GTCAACATCTCCGACCCCTTCTGGCTCACCGACATGGCGACGGGGATCTCATGCGGCTCCCCCTCCCCTCACTTTGAGGT
CGCCTGCTTCAACAACA---CTCCGGTTCTCCGGAGCTCCGCCGCCTTCGGCTACGGCTTTGCGATCATCAACATCTCCT
ACGGGGACGAAACTATGCGCGTCGCTGACCGAGGCAAGATGGAGCTGTTGCGCACTTCCAACAGCTGCCAATTGCCCATC
TGGAACACCTCCATCAAAGTGGGGCGGCCGTTCAGCATCGCTGCCGCCAACCTCAACCTCGTCCTGTACAGGTGCACGGA
GAAGGCCA---CCGCGACCGCGGCACGCCGGGACAGAGCAGCGCTGCTGGTGCAGACGAGGATGAGGTGCGGGAACGAGA
GCATGGTGTTTGCGCGCGCGGGAGGCCGTTATTACGACGAGACGGGCGCGGGCGGCTACCCTGTAGAGGGTTGCGGCGCC
GCCGCCGTGCCGGTGGCGGGCTCGTCGCCGGCCCAGGTGAACGCGAGCGACTACGAGCGGCTCATCAACGATGGCTTCAT
CTTGGCATGGGAGCGCCCCTCTACACGTAAGTTGACCCGTCAAATCA---------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSS--------------S------S--------------------------SSSSSSS
SSSSS--S-------S---S--S--SSSS------S-SS---S------S-------SS--S----SS--S---S--SS-
--S-S-------S----S----------SSS-S-SS-S-SS--S-SSSS-S--S--SSS---SS-------S--S-----
-S-S-----SS------SSS----S-----S--------S-SSS--S-----------S-SS-S------S-S---SSS-
-----S-SSSS-SSS----S---------SS-------S-----------------------SS------------SS--
-----------SSS---S--S--SSSSSSS----SS-----SS---S------S---------------S-S--------
-SSS--SSSSS---S-S---S---S--S--S-----S-S------------S-S-----------S------SS---SS-
--SS------S-SS-----------S--S-------S-----------SSSS----SS-SSS--------S----S---S
----S-SS-------SS----S--SSSSSSS------S-------------------------------S--------S-
-S--S-----S---S---S---------------S------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSS
>forward_494
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--------------------------------------------------------------------------GTGAAA
CGCAACCCAGTGAC------------------------------------------------------------------
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>reverse_2025
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------------------------GTAGGCTGTCGGGTAGATGC------------------------------------
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