>input_sequence_71480
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--------------------------------ATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCTCCCAAACCTTTCCTC
TCCACTCCCAAACCACAAGTCCCTATCGCCCCCATCACCGCCGTACGCTGCACCGCGGCGCCCAAACCGACCACCTCCAC
CCCCAAGCCTGCCCAGCAAGAAGG------CAACC------AGGAGCAAGAACCCACTCCCGACGAGGCCGACGCCAACC
CCCACCGCATCCCCGACGACGAGACCCCGCCGTCGGCGACTGCGACCACCTCCTTCTCGGTGGTCCGGCGCGTGCCGTCG
GCCATCTCGACGGACGGCCGCCTCCGTCGGACGGCGCTGACGCAGGAGGAGCCGCCCAACTACGAGATCGGGTGGAAGCG
CACCAAGAATCTCCCCCTGGAGAAGCCCAAGGGGTGGGCCATCGCCGACTTTCTGGAGAAGCTGGAGGGGCTGATGGAGC
GCGGGCGGTACGGGTCGGGCGCGCTGCTGGGCACGGTGGCGGGCGTGGTGACGGAGCGCGCCCGGGAGGAGGCGGAGATC
CTGATGGCCGAGGGCGGCGTGGACGAGCGCGTGGCGACGGAGCTCTTCCGCGTGCTGCGGCTGGTGGAGATGGACGTGGA
GATGGTCAAAGCCGCCGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGACGGCGCGCGCGCGGTGCCGCCAGGCCATCC
TCGTCGCGCTCTCGCTGTGA------------------------------------------------------------
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>chr3B_1_TraesCS3B01G303700
GTTAACACTGGTTACAATGGGAGTATCACAGGGAATATCATGCATATCAACTTGAGAAGATTAAGTATCATGATAGGGTA
CTGTATCATATTAAATGATGTATTAGTATGTGTCATGAAATGACAACAGATGGAGTCACTATGATATCAAATTATG-TAC
TATGTACCATGAAGGTAATATCATACACCAGTATCATATACATGATACTA-------------CTTTCCATTGTGACCAG
CCTAAGGTAAACGAAGAAGTAGTGTGTGGGCCCATGGGGCACCTGTCACCTGCGCAAC-----C----------------
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-------------------------------------------GAACGAGGCTTGTGATTAGTCAGTAGATTGGAGAGAC
CTCTTCCTCAATGCTTACATTGCTGGTTTTGCACGTGGGCGCTCATGCGAACGCTCGATTGGGCGCCCATTAAGCACCCC
CTCGACCGCTCGCTCTCTTGATTGCTAGACCACGCTCATTTGATCGTTAGATCGGCTTGGGCTCGCTTGATTCCCAGACC
AATCTGTA------------------------------------------------------------------------
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-GAGATTTCAAATATTTGTCTTTTTAGAGATTTCAAATGGACTATCACAT-----ACAAATGTATATGGACATATTTTAG
AGTGTAGATTCACTAATTTTGCTCCGTATTAGGAACGGAGGGAG------------------------------------
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----------------------------------------------TAGATGAAAACCAGAAGAAAAAACCATATAAAGA
GAATAAAGAGAAAGACGAAGATGAAGAAAACCAAACAAACGCAGGCGGAATCTTCTAGAATGTTCACAGAACCAGATCCG
AGTTCTACTGTACGCTTGGCTCAGATGGGCCGGCTCACTGTGTCGCTGGGGC-TTGCTCTTCCT----------------
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------------------------------------------------------ACGAAATGCACACTATGTGGCGC---
GTAGACTAGAAGCCTTTTTCCTGATTTAATCCCGCTCCCACAAATATCGATTCGATCCAGCTCGAGTCTGATGTCTCTTC
TCTGTTCTCGCGCGGCGACAGAGCGCATCTGTAAGCTTATCTCCAAACCTATCTATCACGTAAAAACTGCACAGCCATTC
GCTTCACCATTTCCCACCACGCCTCATCCGCCATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCTCCCAAACCTTTCCTC
TCCACTCCCAAACCACAAGTCCCTATCGCCCCCATCACCGCCGTACGCTGCACCGCGGCGCCCAAACCGACCACCTCCAC
CCCCAAGCCTGCCCAGCAAGAAGG------CAACC------AGGAGCAAGAACCCACTCCCGACGAGGCCGACGCCAACC
CCCACCGCATCCCCGACGACGAGACCCCGCCGTCGGCGACTGCGACCACCTCCTTCTCGGTGGTCCGGCGCGTGCCGTCG
GCCATCTCGACGGACGGCCGCCTCCGTCGGACGGCGCTGACGCAGGAGGAGCCGCCCAACTACGAGATCGGGTGGAAGCG
CACCAAGAATCTCCCCCTGGAGAAGCCCAAGGGGTGGGCCATCGCCGACTTTCTGGAGAAGCTGGAGGGGCTGATGGAGC
GCGGGCGGTACGGGTCGGGCGCGCTGCTGGGCACGGTGGCGGGCGTGGTGACGGAGCGCGCCCGGGAGGAGGCGGAGATC
CTGATGGCCGAGGGCGGCGTGGACGAGCGCGTGGCGACGGAGCTCTTCCGCGTGCTGCGGCTGGTGGAGATGGACGTGGA
GATGGTCAAAGCCGCCGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGACGGCGCGCGCGCGGTGCCGCCAGGCCATCC
TCGTCGCGCTCTCGCTGTGACCGTGGCTGCACGCACGCTTAGGGACGGGTGTAATCACGTCTAAGTATACTGCTAGCACT
TAATGCTGTGCAT-------------AGAAATTTTGTTATCGAGTGGTGCAATGAGGTCAGTCTACTCAAGCTGCAGCAA
ATCTGAATGTTCTGCACCGGTCAACTGTACGCCGGTTGTGTGTCATTCTGCAAGAAGGCAGACAACATGGCCGCAGACTC
GAGCAGTCTATG---GTAGTGTCATGGCCTGGTCGGGTCCACGATCCCTCTGC----------------AGATGACGAGA
CGTGGCAGGTGGCACCATCTTTTCTGAGGGTTGTAAACGAATCAGGTACAATTCAGGCTAACTGTACTTTGCATTTGATG
CTAAATAAACTAGCTCTGTTTTATTGCTACTCCCTCTAGGTGCACCATGAACAAGGTGGAGGAAAAAAAGATAACTTAGG
GCCTGCTTGGATCCAAGGGACTATTTTTAGTCTGACTAAAAATAGTCTTTTTTAGAGGCTAAAGTTCCAAGCACCCCTGA
CTAAAGAGAGGCTAGAACTAGTCTTGAGGCTAAAACTTTTTAGTCACATGAAACCTACTAAAATATGTATTAGCCCTCTC
TTTCCTCATTTAATTCCTCTCCTTTAGCACATGCGAGTTCTGGATTGGATGATTTGGAGGATAATAAATGCTCAATAACT
TCATTTTAGTCTCTTTAGTATTTGGATCCAAGCATGGGTGAGGCTAGCAAGTTTTAGTCCCACTACTTTTAGTCATGGGA
CTAAAACGTATTCAAGCACCCTCTTAATGTTCATTTGCTAATTAATGATATTGCATGCAATAAATTGACAATTACATGTT
GTGTTTGATAGTCTCAAGTCATTGAAAGCATACATGCCCCATATCTCTTATTGGTTGGCTCCTTTATTTATGTCAAGAAA
TAAGAAACGAGATAAGAGTTAATGCACCGCGCCTAAGTGTTTTAGGAATTATTTAGCTTTCGTACGATGACTTATATACC
TAGACGGAGGGG
>chr3D_53
----------------------------------------------------TGAGGAAATTGAGTATCATAATATGATA
GTGCATCATATGAAATGATGTATTAGTATGTGTCATGC-ATAACAACAAATGAGGTCACTATGATATCAAACTGTGATAC
TATACACTCTGGAGGTAGTATCATACACTAATATCATATGCATGATACTAGAGTATGATACTAGCTTCCATTGTGACCAC
CCTAACGCAAAAGGAAAAGTAGTGTGTTGGCCCATGGGGCACCTATCGCCTGCACAAGACGGTC----------------
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-------------------------------------------GAACAAGGCTTGTGATTAGTCGGTAGATTAGAGAGAC
CTCCTCCTCAACTCCTACATTGCTGGTTTTGCGCGTGAGCGCTCATGCGAACGCTCGGTTGGGCGCCCATTAAGCACCCC
TT-GACCGCTCGCTCTCTTGATTGCTAGACCACGGTCATTTGAACGCTAGATCGGCTCGGGCTCGCTTGATTGCTAGACC
GATCTGCTCGCTCGCTCGCTTGTTGTTAGTTCAGAAAAAACTAGTGATGGTTTGAGGGGGAAAACAGGCTTCCCGTTGTT
TACAGAC--TGAAAAACACATACTTTAAAAATGCTCATGGATTAAT-AAAAAGGTTTGCAGATTTGGAAAAAGTTTCTGA
ATTCC-AAAAAAGTTCACAAATTTGAAAAAGGAAATTCGTGGATTTGAG-AAAAAATCATGAATTTGGAAAAAATCACAA
ATTTGAAAAAAA----ATGAATTTGAAAAGCGTTCACAAATTTGGAAAATTCAAAAAC--------AAAATCATGAATTT
GGAAATTTCACAAATTTGATTTTTTTTTGTAAATTTGAAAAAGTTCATGAATCTGAAAAATGTTTGTGGATTTAACAAAT
GTTCACAAAATTTAAAAATGTTTGGGAAGTTGAAAATTTTCAACAATTT-ATAGAAAGTTCATGAATTTGAAAAAAA--G
GCAAATTTTAAAAATGTTCATGGA-------------------TTTGAAAAATATTCATGAATTTTAAAAAAGTTCACAA
TTTGGAAATAAAGGAGAAAAGAAAAAGAATCTGAAAAAAAGAAAAAATATATGAAACC--AAGAAAAAACCTG--AAAGA
GAATAAAGAGAAAGACAAAGATGAAGAAAACCAAACAAACGCAGGCGGAATCTTCTAGAATGTTCACAAAACCAGATTAG
AGGTCTACTGTACGCTTGGCTCAGATGGGCCGGCTCACTGTGTCGCTGGGGCTTTGCTCTTCCT----------------
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------------------------------------------------------ACGAAATGCACACTATGTGGCGCAGC
GTAGATTGGAAGACTTTTTCCTGATTTAATCCTGTTCCCACAGATATCGATTCGATCCAGCTCGAGTCTGATGTCTCTTC
TCTGTTCTCGCGCGGCGACAGAGCGCATTTGTAAGCTTATCTCCAAACCTATCTATCACGTAAAAACGGCACAGCCATTC
GCTTCACCATTTCCCACCACGCCTCATCCGCCATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCTCCCAAACCTTTCCTC
TCCACCCCCAAACCACAAGTCCCTATCGCCCCCATCACCGCCGTACGCTGCACCGCGGCGCCCAAACCGACCACCTCCAC
CCCTAAGCCTGCCCAGCAAGAGGTAGAGGACAACC------AGGAGCAAGAACCCACTCCCGACGAGGCCGACGCCAACC
CCCACCGCATCCCCGACGACGAGACCCCGCCGTCGGCGACTGCGACCACCTCCTTCTCGGTGGTCCGGCGCGTGCCGTCG
GCCATCTCGACGGACGGCCGCCTCCGCCGGACGGCGCTGACGCAGGAGGAGCCGCCCAACTACGAGATCGGGTGGAAGCG
CACCAAGAATCTCCCCCTGGAGAAGCCCAAGGGGTGGGCCATCGCCGACTTTCTGGAGAAGCTGGAGGGGCTGATGGAGC
GCGGGCGGTACGGGTCGGGCGCGCTGCTGGGCACGGTGGCGGGCGTGGTGACGGAGCGCGCCCGGGAGGAGGCGGAGATC
CTGATGGCCGAGGGCGGCGTGGACGAGCGCGTGGCGACGGAGCTCTTCCGCGTGCTGCGGCTGGTGGAGATGGACGTGGA
GATGGTCAAAGCCGCCGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGACGGCGCGCGCGCGGTGCCGCCAGGCCATCC
TCGTCGCGCTCTCGCTGTGACCGTG----CACGCGCGCTTAGGGACGGGTGTAATCACGTCTAAGTATACTGCTAGCACT
TAATGCGGTGCATCCATCCAACACGTAGAAATTTTGTTATCAAGTGGTGCAATGAGGTCAGTCTACTCAAGCTGCAGCAA
ATCTGAATGTTCTGCACCGGTCAACTGTACG-CCGTTGTGTGTCATTCTGTGAGAAGGCAGACAACACGGTCACAGACTC
GAGCAGTCTATGGTAGTAGTGTCATGGCCTGATCGGGTCCACGATCCCTCTGCAGAAGATTTGTGTTACAGATGACGAGA
CGTGGCAGGTGGCACCATCTTTTCTGAGG---------------------------------------------------
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>chr3A_53
----------------------------------------------------TGAGAAAATTGAGTATCATGATAAGATA
GTGTATCATATTAAATAATGTATTAGTATTTGTCATGC-ATAACAACAAATGAGGTCACTATGATATCAAACTATAATAC
TATGCACTGTGGAGGTAGTATCATACACTAATATCATATGCATGATAGTAGAGTATGATACTACTTTCCATTGTGACCAC
CCTAACGCAAAAGGAAAAGTAGTGTGTGGGCCCATGGGGCACCTATCACCTACACATGACGGATCCGGCTTGTCTGCTCC
CTTTCCATGCTCCCATCCGTGCTCCCACCTCATCCAACAGTTGTATTTTTTCCTTTTTTCTTTCTAATCTAATCATCTCC
CCCCTGATTTTAAGGGGGTGGGGCCGGGCTTTATTTTGTTCCAATCAAATTAAGCCACGTATGCGGGAGTACGGATGGGC
ACACGGGAGGGGAGCAGGCAAGTCTCGTCCGCACATGACGGCGGAACAAGGCTTGTGATTAGTCGGTAGATTAGAGAGAC
CTCCTCCTCAACGCCTACATTACTGGTCTTGCGTGTGAGCGCTCATGCGAACGCTCGGTTGGGCGCCCATTAAGCACCCC
TT-GATCGCTCGCTCTCTTGATTGCTAGGTCACAGTCATTTGATCGCTAGATCGGCTCAGGCTTGCTTGATTGCTAGACC
GATCTGCTGGCTCGCTCGCTTGTTGTTAGTTCAGAAAAAACCAGTGATGGTTTGAGGGGGAAAACAGGCTTCCCGTTTTT
TTATAGACTTGAAAAAAACATACTTTAAAAGTGTTCATGGATTTGAAAAAATGGTTTGCAGATTTGGAAAAAGTGTGTGA
ATTCCAAAAAAAGTTCACAAATTTGAAAAAGGAAATTCGTGGATTTAAGAAAAAAATCATGAATTTGGAAAAAATTGCAA
ATTTGGAAAAAAAATCATGAATTTAAAAAGCGTTCACAAATTTTGGAAAAGTTTGTGAATTCAGAAAAAATCATGAATTT
GGAAAATTTCAAAAAATTGATTTTTTTTGTAAATTTGAAAAAGTTCATGAATCTGAAAAATGTTTGTGGATATAACAAAT
GTTTACAAAATTTGAAAACTTTTGGGAAGTTGAAAATTTTCAACAATTTGATAGAATGTTCATGAATTTGAAAAAAGTTG
GCGAATTTTAAAAATGTTCATGGATTTGGAAAAACTTCATGAGTTTGAAAAATATTCATGAATTTTT-AAAAGTTCAAAA
TTTGAAATTAAAGGAGAAAAGAAAAAGAATCTGAAAAAAAGAAAAATAGATGAAAACCAGAAGAAAAAACCTG--AAAGA
GAGTAAAGAGAAAGACAAAGATGAAGAAAACCGAACAAAAGCAGGCGGAATCTTTTAGAATGTTCACAAAACCAGATTGA
AGGCCTACTGTACGCTTGGCTAAGATGGGCCGGCTCACTGTGTAGCTGGGGGTTGCTCACTGTGTCTCTAGATGAGCCGG
CATATCATCTAGATATTTACGAAGTCATCGTAGACGCTTCGTCGTTGACGAGAATATTTCCTTTAACTGAATGCGCATCA
CGAAAAATCCTGAAATAAATCCAGGAATAAATGCGAGCATCAAGATTTAAACCCTGATGGGCTGGGGATCAGGAGCCCCG
CTCCAGCACTGCAAGAATTTTTTTTACTACTAGTTTCATGGCCCAACTCAGCCACTTACAAGCCCAACCCAACCTATATT
GGCATGATACAGGCTTTGAACCCACCCTTCAGTTTCTGTCTAGATTAGCCACTACTGAGGATACCACAGTCTCTCTGACC
ATCCATCCAACTACATTTTCTAAAAAAAAAATCCATCCAATTACAGATTGATTCACAAAATTCACACTACTTGAAGT---
GTAGATTAGAAGCCTTTTTCCTGATTTAATCCTGTTCCCACAAATATCGATTCGATCCAGCTCGAGTCTGATGTCTCTTC
TCTGTTCTCGCGCGGCGACAGAGCGCATTTGTAAGCTTATCTCCAAACCTATCTATCACGTAGAAACTGCACAGCCATTC
GCTTCACCATTTCCCACCACGCCTCATCCGCAATGGCCGCCTCCTTCCTCCGCCCTCTCCTCCCTCCCAAACCTTTCCTC
TCCACTCCCAAACCACAAGTCCCTATCGCCCCCATCACTGCCGTACGCTGCACCGCGGCGCCTAAACCGACCACCTCCAC
CCCAAAGCCCGCCCAGCAAGAGGG------CAACCAGGACGAGGAGCAAGAACCCACTCCCGACGAGGCCGACGCCAACC
CCCACCGCATCCCCGACGACGAGACCCCGCCGTCGGCGACGGCGACCACCTCCTTCTCGGTGGTCCGGCGCGTGCCGTCG
GCCATCTCGACGGACGGACGCCTCCGCCGGACGGCGCTGACGCAGGAGGAGCCGCCCAACTACGAGATCGGGTGGAAGCG
CACCAAGAATCTCCCCCTGGAGAAGCCCAAGGGGTGGGCCATCGCCGATTTTCTGGAGAAGCTGGAGGGGCTGATGGAGC
GCGGGCGGTACGGGTCGGGCGCGCTGCTGGGCACGGTGGCGGGCGTGGTGACGGAGCGCGCCCGGGAGGAGGCGGAGATC
CTGATGGCCGAGGGCGGCGTGGACGAGCGCGTGGCGACGGAGCTCTTCCGCGTGCTGCGGCTGGTGGAGATGGACGTCGA
GATGGTCAAAGCCGCCGTCAAGGAGGAGACCGTCAAGGAGCGCGTCGAGACGGCGCGCGCGCGGTGCCGCCAGGCCATCC
TCGTCGCGCTCTCGCTGTGACCGTG----CACGCACGCTTAGGGACGGGTGTAATCACGTCTAAGTATACTACGACCAGC
AATTAATCTGTGCATG-CCAACACGTAGAATTTTTGTTATCAAATGGTGCAATGAGGTCAGTCTACTCAAGCTGCAGCAA
ATCTGAATGTTCTGCACCGGTCAACTGTACG-CCGTTGTGTCTCATTCTGTGAGAA---------CACGGTCACAGATTC
GAGCAGTATGTGGTAA---TGTCATGGCCTGATCGGGTCCACGATCCCTCCGCATAAGATTTGTGTTACAGATGACGAGA
C-------GTGGCACCATCTTTTCTGAGGGTTGTAAACGAATCAAGTACAGTTCAGGCTAGCTGTACTTTGCATTTGATG
CTAAATAAA-----------------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------S---S------------S-S--
S------------------------------------SS--S------S---SS-----------------S--------
----S--SS--S-----S----------S-S--------S---------------------------------------S
-----S-S---S-S-S----------------------------S--------S---S----------------------
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-----------------------------------------------S----------------S-------S-------
---S-------S--S-----------------S----S-------------------S----------------------
S-S-------------------------------S-----------S----------S--------------S-S-----
S-----SS------------------------------------------------------------------------
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---S--------S-----SS-----SSS-SSSSSSSSSSS-SSS---SSS------S------S-S----S---SSSS-S
SS-SSSS-SSSSSS--SS--SS-SS-S-S-S-S--SSSSSSS-S------------------------------------
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-----------------------------------------------------------------------SSSS-----
----------------S---------------------------------------------------S--------SS-
--S-----------------------------------------------------------------------------
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-----S--------------------------S-S---------------------------------------------
----------------------------S---------------------------------------------------
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---S-----------------S----------------------------------------------------------
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--------------------------S-----------------------------------------------------
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-------------------------SSSS---------------------------------------------------
-----------------------------------------S--------------------------------------
-------------------------------S-S----------------SS---------------S--S-S-------
-------------------------------S------------------------------------------------
--------------------------------------------S-----S---------S-------------------
---------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSS
>forward_1926
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------------------------------------------------------------------ACACTATGTGGCGC
GTAGAC--------------------------------------------------------------------------
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>reverse_3231
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------------------------------TCCCTCTAGGTGCACCATGA------------------------------
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