>input_sequence_71473
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------------------ATGGCAATGGTGGTGAAGGCCCTCCTCGTTGCCGTCGTGGCCGTGGCAGCGCTTGCGCAGCT
CACCGTGGCAGTGGATCACCAGGTGGGCGGCAGCGGCGCGACCTGGGCCACCAGCGGCGGCTACGACTCGTGGTCGGGGA
AGCAGAAGTTCTCTCCGGGAGACAGCCTCGGTACGTATTTAAGCTCACCCCCCTACTCGAC---CTAGCTCTTGACGGCT
AGGATTATATCAAGAACCGACCTGACAAACTTGTTGTGGTCCATGGTTGCAGTATTTTCGTACTCGCCGGCGCACGACGT
CGTGGAGGTGAGCAAGGCCGACTACGACGCCTGCACGGCCAGCAAAGTCGTCGCCAGATACACCGGCGGCAAGACCACCG
TCAAGCTCACCACTGCCGGAAAGCGCTACTTCATCTGCAGCATCACCGGCCACTGCGACGCCGGCATGAAGCTCCAGGTG
AACGTCGCCGCCGCGACCGCCGCCCCCACCAAGCCCAGGGGCCAGAGGAGCGTCGCCCCTGTCGCCGCCCCGGCGCCGGC
ACCGGAGGGGTCGGCCACCGACGAGCAGCTGCCGACAGTGTCGTCGCCTACGGGAACACCGACGCCCAGTTCACCGTCCG
GCTCGGGCGCCGCTAGCATCGGTGCGAGCGCTGCGGTGGCGCTCGCCATGGGCATGGCCGTGGCGTTGGCCATTTGA---
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>chr2A_1_TraesCS2A01G258600
GAATACGGTACACAACTACAAGGTGTGCGATATTCGGCTTAAGCTTGTTGTCTTTGTTGACAGTCACTGGTATTTTCCCG
CAAAAAAAAAGACAGTCACTGGTATAAGATTTTTATACAGTGGCTATGGGAGAAAAGGAAATTATAAAGC--TATGCGAA
ATACCCTATATTTGTAGTATATATTGCTCGCTTGTTTGTTTTTGTCATAAACTTCAGCCACTTTCCTAATCATTTGGAGA
TAAAACAG------------------------------------------------------------------------
-------------------------------------------ATTTATGTTTGAATCAATCCGTACAAGATTAAATGAA
TGTAAAATTATAACCTAGACTACAAAATGCAGTAAAGTTAAGCTGAAATCAACACTTAAATTATATTGCAAGTTAAGATC
TGGTATTGTGTAAATTCAGGTGACTAAGGCATAAAACTATTTTAGGTGGGCAACCGAAAATGAAGAACAGAAGTAATTAC
AGATGTGTGAGAGGTTGCAAACGTCCAAGAAATTTGGAATAACATAATTTGGGCGTGGAAGCCATGAAACACGTCAAGTA
GGTAGGGTGCTCAACTTTTGTCACTCCCGCATAACGTGGGAACCTGTAAACAAACATCCCCAACTAACAAAGAGCAGGGG
ACTAAAATAT---------------------GCAGTTGTTGAGCACGACTGTGCAGTGTGCACATGGCCATGGTGCTAAG
CATTTTCTTTTCTGCGAGCAAACAAGGAAGCTGCAGCAATGCAGGCATAATAATGGAGAGTTGTTGAAGCTCGATAGCTA
GCTAGCTGCAAGCTGGGGGTCAAAGGAGTTGCCGCGTCCGGCCACCAACCCCTTCCCAGTTCACCCCGCCGCGGGCGGCC
GTCAACCATGTCAGGCATGACGACGTACGGCCTGCAGCTCCATCTATATAAGCAGCAGCTCGCCAGCTAGCTAGCTCCAC
AATCGTCCCAGATCTCAAGCTCTCAACTCACCTCACCTCGCATCTCAAACAGTCTTCTCTTTTCGGTTGGCATAATTGCT
AGAAGCAGGGTTCTATCCATGGCAATGGTGGTGAAGGCCCTCCTCGTTGCCGTCGTGGCCGTGGCAGCGCTTGCGCAGCT
CACCGTGGCAGTGGATCACCAGGTGGGCGGCAGCGGCGCGACCTGGGCCACCAGCGGCGGCTACGACTCGTGGTCGGGGA
AGCAGAAGTTCTCTCCGGGAGACAGCCTCGGTACGTATTTAAGCTCACCCCCCTACTCGAC---CTAGCTCTTGACGGCT
AGGATTATATCAAGAACCGACCTGACAAACTTGTTGTGGTCCATGGTTGCAGTATTTTCGTACTCGCCGGCGCACGACGT
CGTGGAGGTGAGCAAGGCCGACTACGACGCCTGCACGGCCAGCAAAGTCGTCGCCAGATACACCGGCGGCAAGACCACCG
TCAAGCTCACCACTGCCGGAAAGCGCTACTTCATCTGCAGCATCACCGGCCACTGCGACGCCGGCATGAAGCTCCAGGTG
AACGTCGCCGCCGCGACCGCCGCCCCCACCAAGCCCAGGGGCCAGAGGAGCGTCGCCCCTGTCGCCGCCCCGGCGCCGGC
ACCGGAGGGGTCGGCCACCGACGAGCAGCTGCCGACAGTGTCGTCGCCTACGGGAACACCGACGCCCAGTTCACCGTCCG
GCTCGGGCGCCGCTAGCATCGGTGCGAGCGCTGCGGTGGCGCTCGCCATGGGCATGGCCGTGGCGTTGGCCATTTGAGAG
GGATCTGGCCGATCCATGTGTACCAAGGCTTAGTTTTGGAGTGCTCAAGTCTTAATCACGTCGATACATTTGCGGATTTG
TTCTTGTTATTCTTGGCTGGCAGTGGCATGCACATTGCCTTCCCTGCATGTTCCTTCCTTCCTACTAGTACAGTGCTATC
AGGGTTCAGTGTACTACTGTGCGATTTATTTGTTGTATTTGTCTGTCGGAGAATAAATACAATTCACATTCTTTAGTATC
GTCTGTCTGCGTTATATATCTTGTAGTATATCTTCAGTATATTTGTGACAATCCATATATCTTCAGTGTCCTGTTGGTTG
GCTTCGTTGGTTGGACTAGTAACGTGTCTCTGTTCAGCAGATACAACAACAGAAACCAGAGCAGAATGCTTCTTTCTTTT
GTGCTTTTTTTTGG--TGCAACCGGCAGGAACATTGCATATTCGTTAAGTGAGAAGCAGAGAGAGAAGAAATATATGTAC
AAAGAGTTGATGCGTATTTTAGGGGAACACACCTAAACCCCGCTAAAAACAAGTACAATAGCGGGC--------------
TATGACATTTTTGACCATGTGAAAGAGAGAGACAAAAAAAAGTAAAAAGTGCGTTCTC--ATGCAAGAGCGAGTCTCTAC
ACGTGCTTCTAGGTAAAAACGTTTAATAAAAAGAAAAGGTTAGAGAAAAAGTGGAAAAAAGTTGTGACTTACACCCAACC
TTATAGGCAACTCTATTGTATGAGTAACTAATAATGCTAACTCTTGATAACATGTCATGTCTACATAGCCAGCAACTAGC
TATATTATTAACCATGCTCTAGAGAACAGAAGTATTACTGAGGTGTTGCTGCAACGGCCAGGTCTGGGGCACTTTGAAAG
TCTGCTCCCACTGTTTGATGTCCTCAATGTTGTGATTAATTAGCACGTATAATTAGAGGGAAATCTACCCTTGCCCAAAC
CTTCATGTGGCTGCCTTGCGCAACCGACGCATCTCTTTCT--AGTGTAGCGTCCGTT
>chr2B_94
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-------------AGTCACTGGTATTGGATTCTTATCCAGTGGCTATGGGAGAAAAGGTAATTATAAAGCTATATGCAAA
ATACCCTATATTTGTACTATATATTGCTCGCTTGTTCGTTTTCGTCATAAACTTCAACGACTTTCCTAATCATTTGGAGA
TAAAACATACTCCCTCCGTCCGGAATTACTTGTCATAGAAATGGATAAAAATGGATGTATCTAGAATTAAAATATGTCTA
GATACATCAATTCCTCCGACAAGTATTTCCGGACGGAGGGAGTATTTATGTTTGAATCAATCTATACAAGATTAAATGAA
TGTAAAATTATAACTTAGACTATAAAATGCAGTAAAGTTAAGCGGAAATCAACACTTAAATTATATTGCAAATTAAGATC
TGGTATTGTGTAAATTCAGGTGACTAAGATATAAAACTATTTTAGGTGGGAAACCGAAAATGAAGAACAAAAGTAATTAC
AGATGTGTGAGAGGTTGCAAGCGTCCAAGAAATTTGGAATAACATAATTTGGGCGTGGAAGCCATGAAACACGTCGAGTA
GGTAGGGTGCCCAACTTTTGGCACTCCCGCATAACGTGGGAACCTGCAAACAAACATCCCCAACTAACAAAGAGCGGGGG
GCTAAAAAATGCAATGTACTACCAATGAGTAGCAGTTGTTGAGCACGACTGTGCAGTGTGCACATGGGCA--GTGCTAAG
CATTTTCTTTTCTGCGAGCAAGCAAGGAAGCTGCAGCAATGCATGCATAATAATGGAGAGTTGTTGAAGCTCGATAGCTA
GCTAGCTGCAAGCTGGGGGTCAAAGGACTTGCCGCGTCCGGTCACCAACCCCTTCCCAGTTCACCCCGCCGCGCGCGGCC
GTCAACCATGTCAGGCATGACGACGTACGGCCTGCAGCTCCATCTATATAAGCAGCAGCTCGCCAGCTAGATAGCTCCAC
AATCGTCCCAGATCTCAAGCTCTCAACTCTCCTCACCTCGCATCTCAAACAGTCTTCTCTTTTCGGTTGGCATAATTGCT
AGAAGCAGGGCTCTATCAATGGCAATGGTGGTGAAGGCCGTCCTCGTTGCCGTCGTGGCCGTGGCAGCGCTTGCGCAGCT
CACCGTGGCAGTGGATCACCAGGTGGGCGGCAGCGGCGCGACCTGGGCCACCAGCGGCGGCTACGACTCGTGGTCGGGGA
AGCAGAAGTTCTCTCCGGGAGACAGCCTGGGTAAGCTCACT---------CCCTACTCGATCTACTAGCTCTTGGCAGCT
AGGATTATATCAAGAACCGACCTGACAAACTTGTTGCGGTCGATGGTTGCAGTATTTTCGTACTCGCCGGCGCACGACGT
CGTGGAGGTGAGCAAGGCCGACTACGACGCCTGCACGGCCACCAAAGTCGTCGCCAGATACACCGGCGGCAAGACCACCG
TCAAGCTCACCACTGCCGGGAAGCGCTACTTCATCTGCAGCATCACCGGCCACTGCGACGCCGGCATGAAGCTCCAGGTG
AACGTTGCCGCCGCAACCGCCGCCCCCACGAAGCCCAGGGGCCAGAGGAGCGTCGCCCCTGTCGCCGCCCCGGCGCCGGC
ACCGGAGCGGTCGTCCACCGACGAGCAGCTGCCGACAGTGTCGTCGCCTACGGGGACACCGACGCCCAGTTCACCGTCCG
GCTCGGGCGCCGCCAGCATTAATGCGAGCGCTGCGGTGGCGCTCGCCATGGGCATGGCTGTGGTGTTGGGCATGTGAGAG
GGATCTGACCGATCCATGGGTACCAAGGCTTAGTTTTGGAGTGTTTAAGTCTTAATCATGTCGATACATTTGCGGATTTG
TTCTTGTTATTCTTGGCTGGCAGTGGCATGCACATTGCCTTCCCTGCATGTTCCTTCCTTCC------TACAGTGCTATC
AGGGTTCAGTGTACTACTGTGCGATTTATTTGTTGTATTTGTCTGTCGGAGAATAAATACAATTCACATTCTTTAGTATC
GTCTGTCTGCGTTATAGTATATCTTGTATATCTTCAGTGTTTTTGTGACAATCCATATATCTTCAGTGTCCTGTTGGTTG
GTTG-GTTCGTTGGACTAGTAACATGTCTCTGTTCAGCACATACAACAACAGAAACCAGAGCAGAAAGCTTCTTTCTTTT
GTGCTTTTTTTCCCCATGCAACCGGCAGGAACATTGCCTATTCGTTAAGTGAGAAACAGAGAG---AGAAATATATGTAC
AAAGAGTTGGTGCCTATTTTAGGGGAACACACCTAAACCCTCATAAGAGCAAGTACAATAGAAGGCTATAAGCCTGCTTA
TATGACATTTTTGATTATGTGAAGGAGAGAGACAAAAAAAGTACATAAGT----GCTCTAATGCAAGAGCAAGTCTCTAC
ACGTGCTTCTAGGTAAAAAAGTTTAATACCAAGAAAAAGTG-GAGAGGAAGTGGAAAAAAGTTGTGACTTACACCCAACC
TTATAGCCAACTCTATTATATGAGTAACTAATAATGCTAACTTTTGATAACATGCCATGCCTACATAGCTAGCAACTGGC
TATATTATTAACCATGCTCTAAAGAACCCAAGTATTACTGAGGTGTTGCCGCAACGGCCAAGTCCAGGGCACTTTGAAAG
TCTGCGCCCACTATTTGATGTCCTCAATGTTGTGATTAATTAGCACATGTAATTAGAGGGAAATCTACCCTTGCTGAAAC
CTTCATGTGGTTACCTTCCGCAACCGACACCTCTCTCTCT--AGCGTCGCGTCCGTT
>chr2D_449
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-----TGTGAGAGGTTGCAAGCGTCCAAGAAATTTGG-ATAACATAATTTGGGCGTGGAAGCCATGAAACACGTCAGGTA
GGTAGGGTGCCCAACTTTTGGCACTCCCGCATAACGTGGGAACCTGTAAACAAACATCCCCAACTAACAAAGAGCAGGAA
ACTAAAATAGGCAATGTG---CCAATGAGTAGCAGTTGTTGAGCACGACTGTGCAGTGTGCACATGGCCATGGTGCTAAG
CATTTTCTTTTCTGCGAGCAAGCAAGGAAGCTGCAGCAATGCATGCATAATAATGGAGAGTTGTTGAAGCTCGATAGCTA
GCTAGCTGCAAGCTGGGGGTCAAAGGAGTTGCCGCGTCCGGCCACCAACCCCTTCCCAGTTCACCCCGCCGCGCGCGGCC
GTCAACCATGTCAGGCATGACGACGTACGGCCTGCAGCTCCATCTATATAAGCAGCAGCTCGCCAGCTAGCTAGCTCCAC
AATCGTCCCAGATCTCAAGCTCTCAACTCACCTCACCTCGCATCTCAAACAGCCTTCTCTTTTCGGTTGGCATAATTGCT
AGAAGCAGGGTTCTATCCATGGCAATGATGGTGAAGGCAGTCCTCGTTGCCGTCGTGGCCGTGGCAGCGCTTGCGCAGCT
CACCGTGGCAGTGGATCACCAGGTGGGTGGCAGCGGCGCGACCTGGGCCACCAGCGGCGGCTACGACTCGTGGTCGGGGA
AGCAGAAGTTCTCTCCGGGAGACAGCCTGGGTACGTATTTAAGCTCACTCCCCTACTCGAC---CTAGCTCTTGACGGCT
AGGATTATATCAAGAACCGACCTGACAAACTTGTTGCTGTCGATGGTTGCAGTATTTTCGTACTCGCCGGCGCACGACGT
CGTGGAGGTGAGCAAGGCCGACTACGACGCCTGCACGGCCAGCAAAGTCGTCGCCAGATACACCGGCGGCAAGACCACCG
TCAAGCTCACCACTGCCGGAAAGCGCTACTTCATCTGCAGCATCACCGGCCACTGCGACGCCGGCATGAAGCTCCAGGTG
AACGTCGCCGCCGCAACCGCCGCCCCCACCAAGCCCAGGGGCCAGAGGAGCGTCGCCCCTGTCGCCGCCCCCGCGCCGGC
ACCGGAGGGGTCGGCAACCGACGAGCAGTTACCGACAGTGTCGTCGCCCACGGGAACACCGACGCCCAGTTCGCCGTCCG
GCTCGGGCGCCGCCAGCATCGGTGCGAGCGCTGCGGTGGCGCTCGCCATGGGCATGGCTGTGGCGTTGGCCATGTGAGAG
GGATCTGACCGATCCATGGGTACCAAGGCT----------------------TAATCATGTCGGTACATTTGCGGATTTG
TTCTTGTTATTCTTGGCTGGCAGTGGCATGCACATTGCCTTCCCTGCATGTTCCTTCCTTCCTA------CAGTGCTGAT
AGGGTTCAGTGTACTACTGTGCCATTTATTTGTTGTATTTGTCTGTCGGAGAATAAATACAATTCACATTCTTTAGTATC
GTCTGTCAGCGTTATAGTATATCTTGTATATCTTCAGTGTTTTTGTGACAATCCATATATCTTCAGTGTCCTGTTGGTTG
GTTG-GTTGGTTGGACTAGTAACGTGTCTCTGTTCAGCAGATACAACAACAGAAACCAGAGCAGAAAGCTTCTTTCTTTT
GTGCTTTTTTTTCTCATGCAACCGGCAGGAACATTGCCTATTCGTTAAGTGAGAAGCAGAGAG---AGTAATATATGTAC
AAAGAGTTGGTGCGTATTTTAGGGGAACACACCTAAACCCCGCTAAAAGCAAGTACAAAAGCAGGCTATAAGCCCGCTTG
CATGACATTTTTAACTATGTGAAGAAGAAAGACAAAGAAAAAGCGAAAGAGTAGGCTCTAATGTAAAAGCGAGTCTCTAC
ACGTGCTCTTAGGTAAAAACATTTAATAAGAAGAAAAAGATAGAAAGAAAGTGGAAAAAATGCGTGACTTACACCCAACC
TTATAGCCAACTCTATTGTATGAGTAACTAATAATGCTAACTCTTAATAACATGTCATGTCTATATAGCCAACAACTGGC
TATATTATTAACCATACTCTAAAGAACAGAAGTACTACTGAGGTGTTGCCGCAACGGCCATGTCAGGGGCACTTTGAAAG
TCTACTCCCACTGTTTGATATCCTCAATGTTGTGATTAATTAGCACATAGAATTAGAGGAAAATCTCCCCTTGCCTAAAC
CTTCATGTGGTTGCCTTCCGCAACCGACGCATCTCTCTCTCTAGCGTCGTGTCCGTT
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSS------------SS----S----S---------------------S------------------S--
----------------S-------------------S-----S-------------S-S---------------------
-------S------------------------------------------------------------------------
--------------------------------------------------------------SS----------------
--------------S-------S--------------------S---------------------------S--------
----------------------------SS--------------------S------------------S----------
--------------------S-----------------------------------------------------------
----------S---------S-----------------------------------------------------------
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---------------------S---------------------S------------------------------------
-------------------------------------------------------------------------S------
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---------------------------------------S----------------------------------------
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----------------------------S-------------------S-------------------------------
------------------------------------S----S--------------------------------------
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--------------S-----------------------------------------------------------------
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-------------S--------------------------------------------S--------------S------
-------S----------S------------------------S-S------------S---------------------
----------------------------------------------------------------SSSS------------
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----------------SSSSS-S-S-------------S-S---------------------------------------
-S-SS-------------------------------------------------------------S-------------
------------SS-----------------------S-------------------------SSS--------------
---------S--------------------------------------S-------------S-----------------
---------------S-------S-----------------SSS-------SSSS-------------------------
-----------------------------S-------S--------S---------------------------------
------S----------------------------------------------------------------------S--
---------------------S---------------------------S----------S---S---------------
----------------------------------------------S----------------------------S----
----------S------S------------------S-------S--S---------
>forward_39
-------------------AAGGTGTGCGATATTCGGCT-----------------------------------------
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>reverse_1834
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-------------------------------------------------------------------------TTGAGAG
GGATCTGGCCGAT-------------------------------------------------------------------
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>forward_651
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-----------------------------------------------------------------------CGTCAAGTA
GGTAGGGTGCT---------------------------------------------------------------------
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>reverse_2452
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---------------------------------------------------CGTTCTCATGCAAGAGCGAG---------
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