>input_sequence_71457
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-------------------------------ACCGCCCAGCTGCAACTCCTTCCTTC---CACACACGCAGAGCAC----
-----AGCACAGGAAAGCGGAGACCTTCGACCTGCCAGCTG---CATGATGGCAAGGCGGCAGAGAGGATTCCGGCTCGG
CCGGAAGCTGCTCGGCCTCTGGCGCTGGGCGCTCTGCAACCGCCGGCGACGCGGCTACGCCCGCCTGCAGCGGTGCCAGC
TGGGAGCTGGCGCAAAGCCGTCCCACGCGGCCGTCGGGAGCGCCAAGCTGCAGCAGCAGCAGCAGCTGGTGGTGCTGCCG
CGGGAGCGG------GACGAGCCCCGGCGGATGCTGGGGTGGGGGCGGTCGCTGGCGCGGCGGATGAGGCTCCTGCCGCG
GCGTGGCGAGCGGCTGCTGGAGGACGCCGGCGAGGCGACCACGCCCAAGGGGAAGGTGGCGGTGTACGTGGGCGGCGACG
AGCCCGGCGGCGAGTCGATGAGGTACGTGGTGCCGGTGGTGTACTTTAACCACCCGCTCTTCGGGGAGCTGCTGCGCGAG
GCGGAGGAGGAGTTCGGCTTCGAGCACCCCGGCGGCATCACCATCCCGTGCGCGGCCACGCGGTTCGAGCGCGCCGCCGC
CATGGCCGCCGCGGGCGGCGGCAGGAAGGCGCCCGGCTGGTGGTAGCACGGCG---G--CTGCCTCCTGTACAGTACTAG
----TACATGCATACACATGCGTGCTCGATTGAATAGA------------------------------------------
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>chr6B_1_TraesCS6B01G286100
AGCAGAAGAATCCTTTTACGAGTGCACCTAAAAGGTTCCACTTTGCTGCCTGCTTTGGATGTTACTAATTCTTGCATTAT
GCTGGATAAGCCTCCTACC-CGATCGAGAGTGCTTTGATGACATAGATCCTGCTTTGCCGCTAGCCCTTTTGTCTGGGGC
AGGTTGGG------TCGATCGGTCCGTTGCGTGCATCAATGGTGGTCTTAGAATTAGACCGGCCAAGGCACC-AAGTATG
CGTATGGTGGTTGCTGCCCTCCTGCTCAGCAAATTTGGACGGTCGATCTGCATGCCATCGCGCTGCGATACACGCACCGC
GTTGACAGCAATAGGTTGCT----TCCCGCCAAAAG------------AGGATGGCCACAACCCGG----GTCATTTTCA
ACTGGCATGTGTGGCATGTGCACGCTATTTCGTCCGACTGCAGCATCAGATGAATCAACTGTGGAACTCAAATCACAAAC
AGCTTGGATTGAAAGGCTATGGCATATTGGCATGTTACCAGATTATTCTCCC-GGGATTTCTTTGAACGCATTTGCAGTG
AACGTGTACG----C----TGTGTGAGTGCCGCGGACATGTTCTGGTGAGCGTACTTT---GCAGATAACATGGCCACAA
AAAAGGGTATCACTAGGGTCTAGGATCAACCGAATAT-----------ATGGCATTCCTTTCAGAAACTCAACGACCGAT
TCCCTCAAGGG-----------AAAAGCTCAACTACCGGGAACCGACCAAAGCTCGGAAGCTCGCCACATCAAGC----G
AATCTTTTCATCCTTAAATTTT----------------------------------------------------------
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----------------------------------------------------------------------------TCTA
GGGCTTTTCTC---TTGCTTTGAATACTTACGTACATCACCTGAATTACAAGTCCTAAGCCTTTGTGCGACGCCATGACA
AAAAACAAGGCTAAAAAGCCTAAAATGACGCACAAAACGCTGGAATTGATCACTCGAGAGTCCCACACGGGCGCGCGCCC
ACACGCACAGTGACG---CCCTTGCCCGGAGTCTTCCCTCCCCTTCCCGTCGTATAT---------------AAAACAAG
CCATTGTCAAGCTCGGTTCT----------GACCGCCCAGCTGCAACTCCTTCCTTC---CACACACGCAGAGCAC----
-----AGCACAGGAAAGCGGAGACCTTCGACCTGCCAGCTG---CATGATGGCAAGGCGGCAGAGAGGATTCCGGCTCGG
CCGGAAGCTGCTCGGCCTCTGGCGCTGGGCGCTCTGCAACCGCCGGCGACGCGGCTACGCCCGCCTGCAGCGGTGCCAGC
TGGGAGCTGGCGCAAAGCCGTCCCACGCGGCCGTCGGGAGCGCCAAGCTGCAGCAGCAGCAGCAGCTGGTGGTGCTGCCG
CGGGAGCGG------GACGAGCCCCGGCGGATGCTGGGGTGGGGGCGGTCGCTGGCGCGGCGGATGAGGCTCCTGCCGCG
GCGTGGCGAGCGGCTGCTGGAGGACGCCGGCGAGGCGACCACGCCCAAGGGGAAGGTGGCGGTGTACGTGGGCGGCGACG
AGCCCGGCGGCGAGTCGATGAGGTACGTGGTGCCGGTGGTGTACTTTAACCACCCGCTCTTCGGGGAGCTGCTGCGCGAG
GCGGAGGAGGAGTTCGGCTTCGAGCACCCCGGCGGCATCACCATCCCGTGCGCGGCCACGCGGTTCGAGCGCGCCGCCGC
CATGGCCGCCGCGGGCGGCGGCAGGAAGGCGCCCGGCTGGTGGTAGCACGGCG---G--CTGCCTCCTGTACAGTACTAG
----TACATGCATACACATGCGTGCTCGATTGAATAGATAGTTGGATGGATGTGTGTATTTTTCGTTTCTTTTT------
ACCAGTTTGAC-T-TTTTTTCTGGGTGTTTGCGGGCGCTCATGCGATGCGATCACGCGAGTTTTTTT-AGTTTTAGAGAA
GATGGAGGAGCGACCCGGGCGAGGAGGCCAGAT----TTGCTTCCAGCCTCTAGCTCTAGCTCAACATGTT-CCCCAACT
TGCATGG---TGATCGTGTGCGTCCTGTA-----TGATCTCTGGTGGCCGATCTAGTAGGCAGCCATTAATTTGCTGCAT
CGATCAATGGATCATGGCTGCCAATTAACCTCCCCGGTTGAAATGTGATCTGCCTGGCGTAAACGGATGAAATATTCGTG
GTCAAGTTCTTGTGTTGAGCGAGTCATTCTGCTTCCGCG-----------------------------------------
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-------------------------------------------------------ATTTCGGATCATGTGTTGCTGGTAA
C-GGTGGTACCGAAAGCGACGTCCGTGGTGTGTACTGAAAATAGTCCGTACAACCGGCGTGTTGGAAGGTACCTCAAGCT
ACTTCGTGTTGTCCAGTGTTGTGCTGGCGTCCAATGGTGATTAGTAGAAACAGTGC------------------------
--------------------------------------GCTGCTTTGTCTGCCATGACAACGCTTTCGGGGTGCCCAACG
GTGCTTAGCAGAAACAGTGCGCTGCTTTGTCTTCTGCCATGACACCGCTTTCAGGGCGTCCAATTTTTTGCTATGACAAC
GCTTTGTGATCCATGGGTCCATTAGTCGTTGGATGTTGATCCTACGGATAAAGTGATAGTCATCACTATCAAAACAAAGA
TGAAGTACCCACTAATCATAGTGAATAAATGTAAGACAAATATATGCCTAGGGTCGCTAGGATTGGTGATATCCTTGCTA
ATGACTGGTAATTAAGCCTAATAATCAGTTTTGCTAGAACTTATCTAGATGAGATATAATCTCATTCACTTTTTATAGCC
ATTGGATATGATGCTATAAGATGTGTGTGTGCTAACGTGGGTTGTATCTATTCTTGTTTTTAAAGTAAATGAGACCAACT
TATATCTCATCTAGATGAG
>chr6A_1
AGCACAAGAATCCTTTTACGAGTGCACCTAAAAGCTTCCACTTTGCTGCTTGCTTTGGATGTTA---ATTCTTGCATTAC
GCCGGATAAGCCCCCTACCCCGATCGAGAGTGCTTTGATGACATAGATCCTGCTTTGCCGTTACCCCTTTTGTCTGGAGC
GGGTTGGATCGATCTCGATCGGTCCGTTGCGTGCATCAATGGCGGTCTTGGAATTAGACCGGCCAAGGCGCC-AAGTACG
CGTATGCTGGTTGCTGCTCGCCTGCTCAGCAAATTTGGACGGTCCATCACGCTGTGACTGCGATACC-TACACGCACCGC
GTTGATAGCAATAGGTTGCT----GTCCGCGAACATGCTATCTTGACAAGATG-----CAATCCGG----GTCATTTTCA
ACCGGCATGTGTGGCATGTGCACGCTATTTCATCTGACTGCAG---CAGATGAACCAACTGAAATACGAACG----AACC
AGATTGGATCGATATATAGGCTA----TGGCATGTTACCAGATTATTCTCCCCGGGATTTCGTTGAACGCGTTTGCACTG
AACGTGTACGTACGC----TGTGTGAGTGCCGCGGACATGTTCTCGTGAGCGTACTTTGCAGCAGATAACATGGCCACAA
AAAAGGGTAGTA-------CTAGGATCAAGCGAATAT-----------ATGGCATTCCTTTCAGAAACTCAACGACCGAT
TCCCTCAAGGG-----------AAAAGCTCAACCACC-GGAACCGACCAAAGCTCGGAAGCTCGCCACATCAAGCTAGCG
AATCTTTTCATTCTAAGGCCTTTTTTGGTTCATAGGGTAGGAAAATCATAGGAATAAAAAAGTTATAGAAAATGAGATGA
CATGTATCTCAAATTTTATGAGTAGTAATAGGAAAGGAGATGCTCTTTGATTCACATCATAGGATTTTTTCCATTGAGTC
TAGGCTAATATTTATTTTCCTATGAAATATGAAGGATAGGAAGAATTCCTTCACAGGAATAGGATTTCATTCCTACAAAC
CAAAGGGCTCTGAAGGAATTTTTCTATAGAAATCATATCCTATGAAATTTCTACAAGATTCCTCTAAATCAAAGGATCTA
GGGCTTTT-TC---TTGCTTTGAATACCTACGTGCATCACCTGAATTACTACACT--AGCCTCTGTGCGACGCCATGACA
AAAAC----------AAGGCTAAAATGACGCACAAAACGCTGGC-------------GAGTCCCACACGGGCGCGCGCCC
ACACGCACAGTGACGAGGCCCTTGCCCGGAGTCTTCCCTCCCCGTCCTGTCGTATAT---------------AAAACAAG
CCATTGTCAAGCTCGCTTCTCCTGCCATTAGACCGCCCAGCTTCAACTCCTTCCTTCTTCCACACACGCAGAGCAGAACA
CAGCTAGCACAGGAAAGCGGAGACCTTCGACCTGCCAGCTGTTGCATGATGGCAAGGCGGCAGAGAGGATTCCGGCTCGG
CCGGAAGCTGCTCGGGCTCTGGCGCCGGGCGCTCTGCAACCGCCGGCGACGCGGCTACGCCCGCCTGCAGCGGTGCCAGC
TGGGAGCTGGCGCAAAGCCGTCCCACGCGGCCGTCGGGAGCGCCAA---GCAGCAGCAGCAGCAGCTGGTGGTGCTGCCG
CGGGAGCGGGAGCGGGACGAGCCCCGGCGGATGCTGGGGTGGGGGCGGTCGCTGGCGCGGCGGATGCGGCTCCTGCCGCG
GCGCGGCGAGCGGCTGCTGGAGGAGGCCGGCGAGGCGACGACGCCCAAGGGGCAGGTGGCGGTGTACGTGGGCGGCGACG
AGCCCGGCGGGGAGTCGATGAGGTACGTGGTGCCGGTGGTGTACTTCAACCACCCGCTCTTCGGGGAGCTGCTGCGCGAG
GCCGAGGAGGAGTTCGGCTTCGAGCACCCCGGCGGGATCACCATCCCCTGCGCGGCCACGCGGTTCGAGCGCGCCGCCGC
CATGGCCGCCGCCGGCGGCGGCCGGAAGGCGCCCGGCTGGTGGTAGCACGGCGCCTGCCCTGCCTCCTGTACAGC---AG
TTACTACATGCATACACATGCGTGCTCGATTGAATAGATAGTTGGATGGATGTGTGTATTTTT--------TTTCTCTTT
ACCAGTTTGACTTTTTTTTTCTGGGTGTTTGTGGGTGCTCATGCGATGCGATCATGCGAGTTTTTTTTAGTTTTAGCGAA
GATGGAGGAGCGGC-----CCAGGAGGCCAGATTTGCTTGCCTCCGGCCTCAAGCTCTAGCTCATGTTCCTCCCCCAACT
TGCATGG---CGATCGTGTGCGTCCTGTACACTATGATCT--GGTGGC--------------------------------
CGATCAATGGATCATGGTTGTCAATTAACCTCCCCGATTGAAATGTGATCTGCCTAGCGTAAACGGGTGAAATATTCGTG
GTCAAGTTCTTGTGTTGAGCGACTCATTCTGCTTCCGCGTTTTCTTCTGATCATGTGTCAATGGTACGGTGGTATCGAAA
GCGATGTTCGTGGTGTGTAGTATCGAAAATAGTCCGTACAACCGGCGTGTTGGAAGGTACCGCAAGCTACTTCGTGTTGT
CCAGTGTTGTGTTGGTGTCCAATGGTGCTTAGTAAAAACAGTGCGCTGCTTTGTCTGCCGTGACAACGCTTTTGGGGGTG
CCCAATGGTGCTTAGCAGAAACAGTGCGCTGCTTTGTCTTCTGCCATGACGCCGCTTTCAGGGCGTCCCGTTTTTGCTAT
GACAATGCTTTGTGATCCATGGGTCCATGAGCCGTTGGATGTTGATCGTACGAATAAAGTGGTAGTCATCACTATCGAAA
CAAAGGTGAAGTACTCACTAATCATATGAAGAAATGTAAGACAAATATATGCTTAGGGTCATTAGGATTGGTGATATCCT
TGCTAATGGCAGTAATTAATTAAGCCTAATAATAGTACTAGTTCCCCGCAGGTCTCGTTGGGGGTGGCCGATCCATAGGG
GGGAGGGGGGTCTCGACCCCACTACCTCCGCCACTGGGATTGGATGCATACATGACCCAACGCAGAGGTCGGCTTCACCT
TCCTTCTTCTCAAAAAATTGGCTAGTGCGAGTAGGATAGATGGTACGTATCAGGGAACGTTTGGCTCTCGGGTGATAGTG
CACCTTTAAAAAATATTAAATTAAAAATGGTCAAAAATCCTAAAAATTGTTGGTAACAAACTAGATAAATCACTACACAC
GGATAAATTTTTTGGGGACAAAGTGACTTTCATGATATTGGTCAGCACAAAGTCAAAATCAGCACTATACTAGGCATACT
ATTCACCCTATATTATCTTGGATAATTTGTTTTTCATGCTTAGATTTTTTTTACGACAGTTTGTTGTGGTCAAATTTTGT
TTATGAGTAGGCCAATAAGTCAAGTTTGCACAACAAAAATTTCAAAGATTTTAGACTTTTTCTTGAATTGTTAAATTTCC
CCTTGTTTTTTATAGGGTTCATCTACCACCAGCTTCATTCTGCTCCGCTTCCGCGATTTCGGATCATGTGTCACTGGTAT
ATGGTGGTACCGAAAGCGATGTCCGTGGTGTGTACTGAAAATAGTCCGTACCGCCGGCGTGTTGGAAGGTACCGCAAGCT
ACTTCGTGTTGTCGAGTGTTGTGCTGGCGTCCAATGGTGCTTAGTAGAAACAGTGCGCTGCTTCGTCTGCCATGACAACG
CTTTCAGGGTGCCCAATGGTGCTTAGCAGAAACAGTGCGCTGCTTTG---------------------------------
--------------------------------TCTGCCATGACACCGCTTTCAGGGCGTCCAATTTTTGCTACGACGGCT
-CTTTTAGATCCATGGATCCATGAGCCGTTGGATGTTGATCGTACGGATAAAGTGGCCGTCATCACTATCAAAACAAAGG
TGAAGTACGCACTAATCCTAGTGAAGAAACGTA-----------------------------------------------
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>chr6D_7
------AGAATCCTTTTACGAGTGCACCTAAAAGCTTCCACTTTGCTGCTTGCTTTGGATGTTA---ATTCTTGCATCAT
GCAGGATAAGCCTCCTA-CCCGATCGAGAGTGCTTTGATGACATAGATCCTGCTTTGCCGTTACCCCTTTTGTCTGGAGC
AGATTGGATCGTTC------GGTCCGTTGCGTGCATCAATGGTGGTCTTAGAATTAGACCGGCCAAAACGCCTAAGTATG
CGCATGGTGGTTGCTGCTCGCCTGCTCAGCAAATTTGGACGGTCGATCTGCATGCTGTCACGCTGCTATACACGCACCGC
GTTGATAGCAATAGGTTGCTTCCTTCCCGCGAAAAG------------AGATG-----CAACCCGGTCGAGTCATTTTCA
ACTGGCATGTGTGGCATGTGCACGCTATTTCGTCCCACTGCAGCAGCAGATGAATCAACTGTGGAACTCAAATCACAAAC
AGCTTGGACTGAAATGCTATGGCATATTGGCATGTTACCAGATTATTCTCCC-GGGATTTCTTTGGACGCACTTGCAGTG
AACGTGTACG----CTGTGTGTGTGAGTACCGCGGACATGTTCTTGCCGGTGTACCGT---ATAGATAACATGCCAAAGA
GAAAAGAAAAGA-------AAAGGTAGGAGTATATACTAGGATATATGATGGCATTACCGTCGGAAACTCAACGACCGAA
TCCCTCTCTTCCCATGGAAAAAAAGAGCTCAACCACCGGGAACCGACCAAAGCTCGGAAGCTCGCCACATCAAGCTAGCG
AATCTTTTCATTCTTAATTTTT----------------------------------------------------------
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----------------------------------------------------------------------------CTAG
GGCCTTTTCTTGCTTTGATTTGAATACTCACGTACATCACCTGAGTTACTACTGCAAAGCCTTTGTGCGACGCCATGACA
AAAAC----------AAGGCTAAAATGACGCACAAATCACTGGCTC-------------GTCCCACACGGGCGCGCGCCC
ACACGCACAGTGACA---CCCTTGCCCGGAGTCTTCCCTCCCCGTCTCGGTTTCTCGCGTCCTCGCTATATAAAAACAAG
CCATTGTCAAGCTCGCTTCTCCTGCCATTAGACCGCCCAGCTTCAACTCCTTCCTTC---CACACACGCGGAACAC----
-----AGCACAGGAAAGCGGAGACCTTCGACCTGCCAGCTGCTGCATGATGGCAAGGCGGCAGAGAGGATTCCGGCTCGG
CCGGAAGCTGCTGGGCCTCTGGCGCCGGGCGCTCTGCAACCGCCGGCGACGCGGCTACGCCCGCCTGCAGCGGTGCCAGC
TGGGAGCTGGCGCGAAGCCGTCCCACGCGGCCGTCGGGAGCGCCA------AGCAGCAGCAGCAGCTGGTGGTGCTGCCG
CGGGAGCGGGA------CGAGCCCCGGCGGATGCTGGGGTGGGGTCGGTCGCTGGCGCGGCGGATGAGGCTCCTGCCGCG
GCGTGGCGAGCGGCTGCTGGAGGACGCCGGCGAGGCGACCACGCCCAAGGGGCAGGTGGCGGTGTACGTGGGCGGCGACG
AGCCCGGCGGGGAGTCGATGAGGTACGTGGTGCCGGTGGTGTACTTCAACCACCCGCTCTTCGGGGAGCTGCTGCGCGAG
GCCGAGGAGGAGTTCGGCTTCGAGCACCCCGGCGGGATCACCATCCCCTGCGCGGCCACGCGGTTCGAGCGCGCCGCCGC
CATGGCCGCCGCCGGCGGCGGCAGGAAGGCGCCCGGCTGGTGGTAGCACGGCGCCTG--CAGCCTCCTGTACAGT---AG
----TACATGCATACACATGCGTGCTCGATTGAATAGATAGCTGGATGGATGTGTGTATTTTT--------TTT------
ACCTGTTTGAC-TTTTTTTTCTGGGTGTTTGTGGGCGCCCATGCGATGCGATCATGCGAGTTTTTTT-AGTTTTAGTGAA
GATGGAGGAGCGGC-----CGAGGAGGCCAGAT----TTGCTTCCAGCCTCTAGCTCTAGCTCAACATGTT-CCCCAGCT
TGCATGGTGATGATCGTGTGCGTCCTGTA-----TGATCT--GGTGGCCGATAGATC--GCAGCCGTTAATTTGCTGCAT
CGATCAATGGATCATGGTTGTCAATTAACCTCTCCGATTGAAATGGG----------------CGGATGAAATATTCGTG
GTCAAGTTCTTGTGTTGAGCGAGTCAT-----------------------------------------------------
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--------------------------------------TCTGCTCTGCTTCCGTGATTTCGGATCATGTGTTACTGGTAA
C-GGTGGTACCGAAAGCGACGTCCGTGGTGTATACTGAAAATAGTCCGTACAACCGGCGTGTTGGAAGGTACCGCAAGCT
ACTTCGTGTTGTCGAGTGTTGTGCTGGCATCCAATGGTGCTTGGTAAAAACAGTGC------------------------
--------------------------------------GCTGCTTTG---------------------------------
--------------------------------TCTGCCATGGCACCGCTTTCAGGGCGTCCAA-----------------
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>SNPs
----S-----------------------------S--------------S--------------SSS-------------
--S---------------------------------------------------------S--S-------------S--
-------S-------------------------------------------------------------S----------
-----------------S-S-----------------------------------S----------S-------------
-----S------------------------S-------------------SSSSSSSS----------------------
---------------------------------------------S----------------------------------
--------------S-----------------------------------------------------------------
--------------------------------------------S-----------------------------------
---------SS-SSSSSSS----------S--------------------------------------------------
---------------------------------S----------------------------------------------
-----------S-----S--------------------------------------------------------------
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-------------------------------------------------S-S---S------------------------
----SSSSSSSSSSS---S------------------------SSSSSSSSSSSSSS-----------------------
-------------------------------------------S------------------------------------
---------------S--------------------------S-------------------------------------
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-------------------------S------------------------------------------------------
----------------------------------------------SSS-------------------------------
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----------------------------------------------------S---------------------------
----------S-----------------------------------S---------------------------------
--S--------------------------------S-----------S--------------------------------
------------S--------------------------------------------------------------SSS--
---------------------------------------------------------------SSSSSSSS---------
-------------------------------S----------------------S---------------------S---
------------S-SSSSS-------------------------------------------------------------
----------------------------------------SS----------SS-SSSS------S--------------
-----------------S--S---------------S------------------S------------------------
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------------------------------------------------------------------------S-------
-------------------------------------------------------------------------S------
-------------S-------------------------S----------------------------------------
-----------------------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS------------------------------------SSSSSSSSSSSS
S----SS---------S-----S--S---------------S-------------SSS---------------------S
--------S--------S-------S---S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSS
>forward_1246
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--------------------------GACGCACAAAACGCTGGAAT----------------------------------
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>reverse_3849
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--------CAGAAACAGTGCGCTGCTTT----------------------------------------------------
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