>input_sequence_71450
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-----------------------------------------------------------ATGGCCATCACCATTGACAAG
TACACCATCCGCATCCTTGTGCTGGCCCTGCTGTCTATACACCTCTTGTCCTCTGCCACCGTCGCACACTGTAAGTATAG
TATGCAACATATTTATATATTTCTCCAAGAGTTTTCTTTACGATGCAACTTTGTCTTTCAAGCCCAAAATGTTAGGACG-
-----TATATATATACACACATGTAGTTTTTCTCTGCTACTATCGCACGATGTATCTACGAATAGATATGCAATAGAGAT
ATTATTTCTCTCGCTGGTTTATCTTTGCGATACTAGCTTCTTTAACCCTAGCTCAACAAGTTAATTATACCATGCACGTG
TAATTCTTACACTTCTCTC-TTTTGTTTTTGACTTCTCATTTTGTGTCTTGTCTGAGATATGTTTCTTGATTGTTACCAA
ATCCAAAACAATTGTTTCATCATATGCATGTCACTCCACAGGCGGAACCATCACGGTCGGTGCGGATGACGAGAAGATCG
ATCTGCCGAACGGGCTGTGCGGCAAGGAGAAGCTGTGCAGAGAGACACACTGCTACTGCTGCCTGTTAAACGACCGCTGT
TACAGAACTATGGATGTGTGCAAGAGTCACTGCGACAACCCGCCATCGTCTTCACAAGACATGCTAGCGGCGGTGGCGGC
---------GACGGCCACAGCGACAACCCCTGCTCCTTTACCCCCTGCGTAG----------------------------
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>chr2D_1_TraesCS2D01G012500
CGAATGCTCACATTAGTCCCGGTTCGTGACTGAACCGGGACTAATGTGAATACTGCCCTGTGACCAAAGCCCTGTTTTCT
ACTAGTGATTGGCGTAGCTGTCGCATGGAAAAGAAGAGACGTGAGCACGGATGAGAGCATCACGAGGGAGCAGGCAATGT
TGACCTAACATGGATTGATTCTAAATTATGAATCAAAAATCCTGATCTAGTAAAAAAGATATGGAATGCACTAGAAAAAA
ATTTCATTATTTCCTCATATAATGCACACAACTCTAGTTTCTGGGCCCTTTTTAGACAATTATACGTTCTAGAAGTCAAT
TCTAATTGATCAATAAAAATCATTGCAAAATGATGGGTCTCCTTCCATAACTTTCCAAATTCCTATAACAAGTAACAAGT
GTTTTATTCCAAGATTAAGTTATTACTGAACAAAGAAAAATTTCAAGCCCCATCCGTTCATAGGGGCGATTGTATGCTTG
TGTATGTGAGCGACTTTCATTGTACTCTGTTAAAAAAAGAATTTGATATCACAATTTGGAAATTCACATGTATCTACAGA
AGATACGGGATAAATCAGGCAAACAGTTCGCGTTCCACGCGAACCAACCTGTGGTTGGATGGTTAGAGGGACGGTGGTAT
TCCCAGCCTACCAGGGTTCAAGTCCTGGTGCTCCTGTCGATGACAAGGCGCCTACGGTGACTTCGTAAATCTCAAGATTA
TATGTTTGGGTGAGTGTATGCGCATATGTATGAGCGCTTGCATCTGTACTGTGTTTAAAAAAAAGTTCACGTTCCGCCAC
AAAATTCTGGAAGGAAACTTGTCTAAAAAAGGAGAAGAAATAATCTTACAAAGAGTTTCCTTGATTTATATGGAAAGATA
CTAAATCTTTCCAATTTTCTGCA----CCGGATCTCCCTTCTCTCGAT-CCCCTATATATACAAACACACGAGTCATGTA
CATGTTCACAC--CAAGCAATC-GGTCGATATC-----------TTTTCTCATCGATCGATGGCCATCACCATTGACAAG
TACACCATCCGCATCCTTGTGCTGGCCCTGCTGTCTATACACCTCTTGTCCTCTGCCACCGTCGCACACTGTAAGTATAG
TATGCAACATATTTATATATTTCTCCAAGAGTTTTCTTTACGATGCAACTTTGTCTTTCAAGCCCAAAATGTTAGGACG-
-----TATATATATACACACATGTAGTTTTTCTCTGCTACTATCGCACGATGTATCTACGAATAGATATGCAATAGAGAT
ATTATTTCTCTCGCTGGTTTATCTTTGCGATACTAGCTTCTTTAACCCTAGCTCAACAAGTTAATTATACCATGCACGTG
TAATTCTTACACTTCTCTC-TTTTGTTTTTGACTTCTCATTTTGTGTCTTGTCTGAGATATGTTTCTTGATTGTTACCAA
ATCCAAAACAATTGTTTCATCATATGCATGTCACTCCACAGGCGGAACCATCACGGTCGGTGCGGATGACGAGAAGATCG
ATCTGCCGAACGGGCTGTGCGGCAAGGAGAAGCTGTGCAGAGAGACACACTGCTACTGCTGCCTGTTAAACGACCGCTGT
TACAGAACTATGGATGTGTGCAAGAGTCACTGCGACAACCCGCCATCGTCTTCACAAGACATGCTAGCGGCGGTGGCGGC
---------GACGGCCACAGCGACAACCCCTGCTCCTTTACCCCCTGCGTAGTCAAATTAATTGGCTCACGTATTTATTT
TGTCCCAAGACATGTGTGATGATGCTTGACGTGCGAAAAAAC-AACAACTTTGCAATAATTAAGAGCTAGCTT-------
------------------------------------------GATAGCCCAGTTAGTTGTTGCAGTCTGATTTGTCATGT
TGCCTTTAGACCCATGCCCCCGGAAATCAAGTTGAATATCCGCGTTGGATGTATGAAATTAGTAAATTAAG-AAAAACAA
TACCATCAAAAGCGCATGTAGGCCTTTATCTTTATCCCACGACCTATTCCACGCCTTGATGTTGGTGGCCAAAAGTGCCA
GGGTTTATAGTAC---TACATCTATTCTTCCTAATTTTAGTTGAGTATCCTGGAGTAACTCTTCTCTCTGACATATATAC
AAGGAAATTAAATTCTGGAGAATTACAAAAAAAGCGGGGCTTCTCTCTCTCTTAATGTACGCATGCATGCACAAATCACT
CACCTTATTCTGCGACCAAATTTTGAAAAGTTGTGTCTGAAAAAAGAGAAAAACATGATCGTATGAATTAAAAACTTGAT
TTATGTGCGCATGGATCTTAATGAATAATAACACGCGAAATAGCAACATACTCCCTCCGCCTTTAAAGAGTGTACTTTCA
ACTTTGTTGGATGGTCAAACTATGTTAAAGGTTGACCGAGCTTGTGCAAAAATATATCAATATTTATGAAACAAAATAGG
TATATGATGAAAATATATTTTACCATGAATCTAACACTACAAATTTGATGTCATAAATGTTGGTGTATTATTGTATAAAT
ACGGTCAAACATAAAATGTTTGACTTTCCAACAAAGTTGGAAGTACACTTTTCAAAGGACGGAGGGAGTACTATGGAAAG
ACACTGAATTTCTTGATCTTGTTCTTCGTGGATGAAAGACGAGTTCTAACATCAGATCTCCCTTCTCTCAGCCTCCCCCT
CTATAGAGTAAAACACAAGCCCTATATATGTTGACAACAAGCAACCAAGCTTGTACAAAAACACAC
>chr2B_780
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-----------------------------------------------------------AAACAGTTCGCATTCCGCCAC
AAAAGTCCGGAACGAAACTTGTCTAAAAAAGGAGAAGAAATAATCTTACAAAGAGCTTCCTTGATTTATACGGAAAGATA
TTAAATCTTTCCAATTTTCCGCA----CCGGATCTCCCTTCTCTCGACCCCCCTATATATACAAACACACGAGTCGTGTA
CATGTTCACAC--CAAGCAATCTGGTCGATATC-----------TTTTCTCATCGATCGATGGTCATCACCATGGACAAG
TACACCATCCGCATCCTTGTGCTGGCCCTGCTGTCTATACACCTCTTGTCCTCTGCCACCGTCGCACACTGCAAGTATAG
TATGCAACATATTTATATATTTCTC-AAGAGTTTTCTTTACGATGCAACCTTGTCTTTCAAGCCCAAAATGTTAGG----
------------ATACGCACATGTAGTTTTTCTCTGCTACTATCACACGATGCATCTACGAATAGGTATGCAATAGAGAT
ATTATTTCTCTCACCGGTTTATCTTTGCGATACTAGCTCCTTTAACCCTAGTTCAACAAGTTAATTATATCATGCACGTG
TAATTCTTACACTTTTCTCTTTTTGTTTTTGACTTCTCATTTTGTTTCTTGTCTCAGATATGTTTCTTGATTGTTACCAA
ATCCGAAACAATTGTTTCATCATATGCATGTCACTCCACAGGCCGAACCATCGCGGTCGGTGTGGATGACGAGAAGATCG
ATCTGCCGAACGGGCTGTGCGGCAAGGAGAAGCTGTGCACAGACACGCACTGCTACTGCTGCCTGTTAAATGACCGCTGC
TACAGAACTATGGATGTGTGCAAGAGTCACTGCGACAACCCGCCATCTTCTTCGCAAGACATGCTAGCGG---------C
---------GACGGCCATAGCGACAACCCTTGCTCCTTTACCCCCTGCCTAGTCAAATTAATTGGCACACATATTTATTT
TGTCCTAAGACATGTGTGATGATCCTTGATGTGCGAAA-AAC-AACAACTTTGCAATAATTAAGAGCTAGCTT-------
------------------------------------------GGTAGCC----TAGTTGTTGCAGTCTGATTCGTCATGC
TGCGTTTAGACCTAT-CCCCCGCAAATCAAATTGAATATCTGGGTTGGATGTATGAAATTAGTAAATTAATAAAAAAGAA
TACCATCAAAAGTGCATGTAGGCCTTTATCTTTATCCCACGACCTATGCCATGCCTTGGTGTTGGTGGCCAAAAGTGCCC
GGGTTTGTAGTACTAGTACATCTATTCTTCCTAATTTTATTTGAGTATCGTGGAGTAACTCTTCTCTCTG----------
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>chr2A_867
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------------------------------------------------------------------TATATGGAAAGATA
CTAAATCTTCCCAATTTAATTTCCTCGCCGGATCTCCCTTCTCACGATCCCCCTATATAAACACAAA---GAGTCATGTA
AAATGGAAAAGAACAAGCAATCTTGTCGTAGAACAGAGGTATTTTTTTCTCATCGATAGATGACCATCACCATGGACAAG
TACGTGATCCACATCCTTGTGCTGGCCCTGTTGTCTCTACAC-TCCTGTCCTCTGCCACCGTCGCACAATGTAAGTACAA
TATGCAGCATACTTATATTTCTCTCCCGGAGTTTTCTTTACGATGCAACCTTGTCTTTCAAGCCCAAAATGTTACGACGT
AGTACTATATATATACGCACATGTAGTTTTTCTCTGCTACTATCACGCGATGTATCTACGAGTAGATATGCAACAGAGAT
GCTATTTCTCTCGCCGGTTTATCTTTGCGATACTAGTTTCTTTAATCCTAGTTCAACAAGTTAATTATATCATGCACTCC
T----------CTCTTTTGTTTCTTGTTTTGATTTCTCTTTTTGTTTCTGGCCTGAGATATGTTTCTTGATTGTTATCGA
ATCCAAAACAATTGTTTCATCATATGCATGTCACTCCACAGGCCGAACCATCGCGGTCGGTGCGGATGACGAGAAGATCG
ATCTGCCGAACGGGCTGTGCGGCAAGGAGAAGCTGTGCACAGAGACACACTGCTACTGCTGCCTGTTAAACGACCGCTGC
TACAGAACTATGGATGTGTGCAAGAGTCACTGCGACAACCCGCCATCGTCTTCACAAGACATGCTAGCGG---------C
GGTGGCGGCGACGGCCAGAGCGACAACCCCTGCTCCATTACCCCCTGCATAATCAAATTAATTGGCTCACGTATTTATTT
TGTCCCAAGACATGTGTGATGATGCTTGGTGTGCGAAA-AGAAAACAACTTTGCAATAATTAAGAGCTAGCTTTGTCCCA
AGACATGTGTGATAGCCCAGTTAGTTTTTTTTTTTTGAAATAGATAGCCCAGTTAGTTGTTGCAGTCTGATTTGTCATGT
TGCGTTTAGACCTATGCTCCCGGAAATCAAGTTGAATATCCGCGTTGGATGTATGAAATTGGTAAATTAAG-AAAAAGAA
TACCATCAAAAGCGCATGTAGGCCTTTATCTTTATCCCACGACCTATTCCATGCCTTGGTGTTGGTGGCCAAAAGTGCCA
GGGTTTGCAGTAC---TACATCTATTCTTCCTAATTTTATTTGAGT---------TAACTCTTTCCTCTGTCATATATAC
AAGGCAATTAAATTCGGA--------------------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS---S-----S-S---------
----S--S----S------------------------------------------S------------------------
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-------------------------------------------------------------------------S------
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-------------------------------------------------S------------------------------
----------------S---------------------------S-----------------------------------
--------------S------------------------------------S-----------------S----------
--------------S------------------------------S----------------------------------
-------------------------------------------S--------S---------------------------
---------------------------------------S---------------------------------------S
----------------------------------------------------------------------SSSSSSSSS-
-----------------S------------------------------S-------------------------------
-----------------------------S--------S-----------------------------------------
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---S--------S----------------------------------------------------------------S--
---------------------------------------------------S------S---------------------
------S--------------------------------S---------S--------------------S---------
----S----------S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_662
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--CCAGCCTACCAGGGTTCAAG----------------------------------------------------------
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>reverse_2697
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--------------------------------------------------------TCTCCCTTCTCTCAGCCTCC----
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