>input_sequence_71447
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-------------------------------------GC--ATATATATCAACCCAAGCCGCGAGAAATTACAAGTACGT
GCGCCGCACATCGATCGTCGTCGCCTTCATTCCACCG----------CGAAGCAAGCGAGTATCAGCAGCGAGCGATGGC
GTCGGCTGGCGAGGGGACGGGCATCATCATCCACGCGCGGCCGCTGCAGGACGCGGCGTCGGCCGGCGCCGGCGGCGGGG
GCGGGTCGTACACGGCGGTGTTCGTGGTGCTGGGCGTCATCGCGGCGCTCATCGTCATCTCCTGCCTCGTCGGCCAGGTG
TGCACAAAGAGGCACCTGCGTCCGCGCCCGCGCAGGGACCGCGTCGCCTACTACGACGACGACCTCGAGGGCGGCGGGTA
CGGCCACGGCCACGGCGTCGCCAAGATGGAGGCCGCCGCGCCGGCCACGGTGACCGCGGTGGTGCCGGCCGCGGCGTCCG
T---------GGAGATGCGGCAGGTGGCTTGACGGCGCCAGAGAGCGCGG-----------------------CGTGGCA
TGGCATGTCATGATTTGGTTGCGACGCGTGTGTACGTACGTAGTCTTGTTCATGTGAACTCCCGTGTGAATAGAACGTGT
CTCCATAGCCACGACTGTAAATATGAAATTTGTTGTGATTGTGATTATGTATAGATGTGAAGTACTCCCTCCGTCAAAAA
AGTACTTCTCTCAAACGGATGTATCAAGATTACAGATTTAAATCCCAAAAATGTATGA----------------------
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>chr1B_1_TraesCS1B01G436600
GCGTCCTCGGCCTCGTCCTTGCCGACGGCCTCCTTGAGCTTCTTGGGGAGGCCCTCGATGAGGTCCTTGGCGTCCTTGAG
CGCCAGGTTGGTCAGCGCGCGCACCACCTTGATGGTGGCGATGCGGGCGCTGCTCGGCACCTCCTCGATCACCACGTCGA
ACTCCGTCTGCTCCGCGGGCGCCTCGGCCTCGGCCGCCGGTCCGGCCGGCGCGGCCACGGCGGCGGCGGGCGCGAACGCG
GCCGCCGACACGCCCAGGCGCTCCTGCAGGTGGTCCACCAGCCCGCGCGCCTCCTCCAGGGTCAGCCCCGCGATGGCGTC
CCCCAGCTCCAGCACCTTCGGGGAGGCCGCCGCGGTTGAGGTGCAGGCGACGGCGACGGAGGGGCGGCGACCGTGCATGG
GGACGAAGAATGGGTGTGGCCGGGGCAGGGAGGTGGCGGCGGGCTTGGCGTGGAGGAGGGTGAAGGCCGATGAGAGGGCG
GTGGAAGCCATG---GCCATGGCGATGAGTGCTTCTCGGATGCTATGCTCTGCTCTGCTCTCCCTGGCTCGGAGGTGGCA
ACGGCAGAGGGGAAGAAAAGAGGCGCGCGAAGATAAGATAAGAAGATGTGT---CACGTAGGAAACGAATGTGACGTGCG
TTAGCCACGACAGCTGCACGTTTCTGACCGTCGGATCGGCGATGGACGGTGATCGG------------------------
CCATTCATGCAGACAGAATCGATCCATGCAAAAGGAGGAAGATGACACCCATCCATCAATCCAGC---------------
------ACCCCAGCTAAGAGCATCCCAAAAAAGAATCTTGCAAGGTAAACTTGCGAGACTGCAATTGATCGGACACTT--
------------------------TGGAAGGAATACGGTGAGTGGCAACCAACGTTGGATTGGATTGGATTGGATGGATC
CTTAGCTTTGCCATGGACGCCGGCAAGGAACAACAACACAGCATAAATTGCAGAGTTCGCAAGCTCCAATCCTCCCCTTG
CACACCAGACCAAAACCAGCCCTCAACCTCACTCCAAGC--ATATATATCAACCCAAGCCGCGAGAAATTACAAGTACGT
GCGCCGCACATCGATCGTCGTCGCCTTCATTCCACCG----------CGAAGCAAGCGAGTATCAGCAGCGAGCGATGGC
GTCGGCTGGCGAGGGGACGGGCATCATCATCCACGCGCGGCCGCTGCAGGACGCGGCGTCGGCCGGCGCCGGCGGCGGGG
GCGGGTCGTACACGGCGGTGTTCGTGGTGCTGGGCGTCATCGCGGCGCTCATCGTCATCTCCTGCCTCGTCGGCCAGGTG
TGCACAAAGAGGCACCTGCGTCCGCGCCCGCGCAGGGACCGCGTCGCCTACTACGACGACGACCTCGAGGGCGGCGGGTA
CGGCCACGGCCACGGCGTCGCCAAGATGGAGGCCGCCGCGCCGGCCACGGTGACCGCGGTGGTGCCGGCCGCGGCGTCCG
T---------GGAGATGCGGCAGGTGGCTTGACGGCGCCAGAGAGCGCGG-----------------------CGTGGCA
TGGCATGTCATGATTTGGTTGCGACGCGTGTGTACGTACGTAGTCTTGTTCATGTGAACTCCCGTGTGAATAGAACGTGT
CTCCATAGCCACGACTGTAAATATGAAATTTGTTGTGATTGTGATTATGTATAGATGTGAAGTACTCCCTCCGTCAAAAA
AGTACTTCTCTCAAACGGATGTATCAAGATTACAGATTTAAATCCCAAAAATGTATGAA-TAAATTTTAAATTCTTTGCA
TTGAGGTAGCAGAACTGC----------------------------------------TGAAAGAATAAAGAAAATGCAC
ACAAGAAGATTACTATCTTCCTCTTCCGCAAAAAAAAGAAGATTACCATCTTCCTAACCTTAGGAGCTCCTAGGTGCTCC
ACCCACCCATACCCTTTTCATGTACTCGCGTCGAGATTCTCAAGGTATGTTGCCTAAAATCTTCAAAGTGCATGCGCACC
TTTTCGAGAAAACAAACGGCCGTGTTGTGTCACACACATGCATGCGTATGATTTGTCTGTTAGTGCATGTAATTGACCAT
TAAATGTAGTCAGGCTTATCATACTGATTGACAGCAAAACAGATTCACATGTATTTATTCTGGGCCTTTAATTTTTAAAA
AGTCATATATTTCAAACCGCGTGTCGGAATTCAGATCTGTTTTCACCTTTAGGATCTTCGTGACGAGATCTTTGAAACTA
GATCCCATATGAGTATACTTCGACAAAAATAATTGATGTCAACTTTGATGTTATATTGTGCTAACTTTAGTACTGTATTG
TGCAACTTTGGTACTACATCGTGCAACTTTAGACTAGCCACAATGCGAGTAACTTCAGCAGTAACATCAAGTCCAACTAA
GCAAATATGCTTATGTGTCAATGAGTTAATAAGAAGAGAGGTAGTTTGAGTAACTTAGCTAGTTACCGTAACATCACATG
TCTCAATGCACTATGAGTTTATAACCTAATAAATAAAGCTTTGCATGACACCATACCTATGTTACTACCCGCTATGAAGG
TAGTAACATAGTCTAGGGATATGTGTATGTTACTAGTGTATATTACTATGACTATGGCTAGTCTTAGTACCACATAGAAC
CACCGACTAGACTAGTTGCACATACATATACTTAGTTGGCTTGTAATGTACTCTAGTTGTATATACATTGATGTTTAGTT
GGCTTTAATATAGTCTAATTGCATACACATTGATATTTAGTTGGCAGGAAGACTAGTTG
>chr1A_1
GCGTCCTCGGCCTCGTCCTTGCCGACGGCCTCCTTGAGCTTCTTGGGGAGGCCCTCGATGAGGTCCTTGGCGTCCTTGAG
CGCCAGGTTGGTCAGCGCGCGCACCACCTTGATGGTCGCGATGCGGGCGCTGCTCGGCACCTCCTCGATCACCACGTCGA
ACTCCGTCTGCTCCGCGGGCGCCTCGGCCTCGGCCGCCGGTCCGGACGGGGCGGCCACGGCGGCGGCGGGCGCGAACGCG
GCCGCCGACACGCCCAGGCGCTCCTGCAGGTGGTCCACCAGCCCGCGCGCCTCCTCCAGGGTCAGCCCCGCGATGGCGTC
CCCCAGCTCCAGCACCTTCGGGGAGGCCGCGGCGGTTGAGGTGCAAGCGACGGCGACGGAGGGGCGGTGACCGTGGATGG
GGAAGA---ATGGGTGTGGCCGGGGCAGGGAGGTGGTGGCGGGCTTGGCGTGGAGGAGGGAGAGGGCCGAGGAGAGAGCG
GTGGAAGCCATTGCCGCCGTGGCGCTGAGTCTTTCTT-GATGCTCTGCTCTGCTCTGC--------GCTCGGAGTTGGAA
ATGGCAGAGGGGAAGAAAAGAGGCGCGCGAAGATAAGATAAGAAGGTGTGTCATCACGTAGGAAACGAATGTGACGTGCG
TTAGCCACGACAGCTGCACATTTCTGACCGTCGGATCGGCAATGGACGGTGATCAGAATGCTTATAGTTTGTTCAAGAAT
CCATTCATGCAGAAAGAATCGATCCATGCAAAAGGAAGAAGATGACATCCATACATCAATCTAGC---------------
------ATCCCAGCTAATAGCATCCAAAAAAAGAATCTTGCAAGGGTAACTTGCGAGACTGCAATTGATCGACGCCCTGC
ATATTGTTTGTTCCCTTGGAATGATGGAAGGAATACGGTGAGTGGCAACCAACGTTGGATTGGA-----TTGGATGGATC
CTTAGCTTTGCCATGGATGCCGGCAAGGA---ACAACACAGCATAAATTGCAGAGTTCGCAAGCTCCAATCCTCCCCTTG
TACACTAGACCAAACCCAGCTCTCGAGCTCACTCCAAGC--ATATATATCAACCCAAGC-GCGAGAGATTACAAGTACGT
GCGCCGCAC----ATCGTCGTCGCCTTCATTCCACCGGTCACCACAGCGA---------GCATCAGCCGCGA----TGGC
GTCGGCTGGCGAGGGGACGGGCATCATCATCCACGCGCGGCCGCTGCAGGACGCGGCGTCGGCCGGCGGCGGCGGCGGG-
--GGGTCGTACACGGCGGTGTTCGTGGTGCTGGGCGTGATCGCGGCGCTGATCGTCATCTCCTGCCTCGTCGGCCAGGTG
TGCACCAAGAGGCACCTGCGCGCGCGCCCGCACAGGGACCGCGTCGCCTACTACGACGACGACCTCGAGGGCGGCGGGTA
CGGCCACGGCCACGGCGTCGCCAAGATGGAGGCTGCCGCGCCGGCCACGGTGACCGCGGTGGTGCCGGCCGCGGCGTCCG
TGGCGTCCGTGGAGATGCGGCAGGTGGCTTGACGGCGCCAGAGAGCGCGGTGCAGGAAGGGAAGCCGGCGTAGCATGGCA
TGGCATGGAATGATTTGGTTGAGACGCGTGTGTACGTACGCAGTCTTGTTCATGTGAACTCCCGTGTGAATAGAACGTGT
CTCCATAGCCACGACTGTAAATATGAAATTTGTTGTGATTGTGATTATATATAGACGTGAAGTACTCCCTTCCTCTAAAA
A-TACTTGTCTCAAACGAATGTATTTCGGTTACAGATTTAAATCCCCAAAAGTGTA------------------------
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>chr1D_1
GCGTCCTCGGCCTCGTCCTTGCCGACGGCCTCCTTGAGCTTCTTGGGGAGGCCCTCGATGAGGTCCTTGGCGTCCTTGAG
CGCCAGGTTGGTCAGCGCGCGCACCACCTTGATGGTGGCGATGCGGGCGCTGCTCGGCACCTCCTCGATCACCACGTCGA
ACTCCGTCTGCTCCGCGGGCGCCTCGGCCTCGGCCGCCGCTCCGGCCGGGGCGGCCACGGCGGCGGCGGGGGCGAACGCG
GCCGCCGACACGCCCAGGCGCTCCTGCAGGTGGTCCACCAGCCCGCGCGCCTCCTCCAGGGTCAGCCCCGCGATGGCGTC
CCCCAGCTCCAGCACCTTCGGGGAGGCCGCGGCGGTTGAGGTGCAAGCGACGGCGACGGAGGGGCGGCGACCGTGGATGG
GGAAGA---ATGGGTGTGGTCGGGGCAGGGAGGTGGTGGCGGGCTTGGCGTGGAGGAGGGAGAGGGCCGAGGAGAGAGCG
GTGGAAGCCATG---GCCATGGCGCTGAGTGTTTCTCGGA----------TGCTCTGCTCTCCCTGGCTCGGAGTTGGCG
ACGGCAGAGGGGAAGAAAAGAGGCGCGCGAGGATAAGATAAGAAGATGTGTCA---CGTAGGAAACGAATGTGACGTGCG
TTAGCCACGACAGCTGCACATTTCTGGCCGTTGGATAGCTGATGGACGGTGATCAGAATGTTTATAGTTTGTTCAAGAAT
CCATTCATGCAGAAAGAATCGATTCACGCAAAAGGAGGAAGATGACATCCATCCATCCATCCATCGATGTAGCACTGAGA
AACAAAACCCCAGCTAAGAGCATCCCAAAAAAGAATCTTGCAAGGGTAACTTGCGAGACTGCAATTGATCGGACACTT--
------------------------TGGAAGGAATACGGTGAGTGGCAAACAACGTTGGATTG----------GATGGATC
CTTAGCTTTGCCATGGATGCCGGCAAGGA---ACAGCATAGCATAAATTGCAGAGTTCGCAAGCTCCAATCCTCCCCTTG
TACACTAGACCAAACCCAGCCCTCGAGCTCACTCCAAGCATATATATATCAACCCAAGCCGCGAGAAATTACAAGTACG-
--------C----ATCGTCGTCGCCTTCATTCCACCGGTCACCACCGCGAAGCAAGCGAGCATCAGCGGCGA----TGGC
GTCGGCTGGCGAGGGGACGGGCATCATCATCCACGCGCGGCCGCTGCAGGACGCGGCGTCGGCTGGCGCCAGCGGCGGG-
--GGTTCGTACACGGCGGTGTTCGTGGTGCTGGGCGTCATCGCGGCGCTCATCGTCATCTCCTGCCTCGTCGGCCAGGTG
TGCACCAAGAGGCACCTCCGCGCGCGCCCGCGCAGGGACCGCGTCGCCTACTACGACGACGACCTCGAGGGCGGCGGGTA
CGGCCACGGCCACGGCGTCGCCAAGATGGAGGCCGCCGCGCCGGCCACGGTGACCGCGGTGGTGCCGGCCGCGGCGTCCG
T---------GGAGATGAGGCAGGTGGCTTGACTTAGCCAGAGAGCGCGGTGCAGGAAGCCG----------GCGTGGCA
TGGCATGTCATGATTTGGTTGCGC-----------------------GTACAGGTGAACTCCCGTGTGTATAGAACGTGT
CTCCATAGCCACGACTGTAAATATGAAATTTGTTGTGATTGTGATTATATATAGACCTGAAGTACTCCCTTCGTCTGAAA
A-TACTTG---------AATGTATTTGGATTACAGATTTAAATCCCAATAAGTGTACAACTAAATTTTAAATTCTTAGTA
TTGAGGTAGAAGAACTGCAGAAATATACGTATATTGCAGTGGGTTTATTTGATAGAGCTGAAAGAATAAAGAAAATGCAC
GCAAGAAAATTACTATCTTCCTAACCAGTAA----------------------------TTAGGAGCTCCTAGGTGCTCC
ACCCACCCACATCTTCTTCTTGTACCCGCCTCGAGATCCTCAAGATATGTTG----------------------------
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>SNPs
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-------------------------------------------------S------------------------------
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------------------------------S--------------S-----------------------------S----
---S--SSS---------------------------S-----------------------S--S------S-----S---
------------------------S------S------------S-----------------------------S-----
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-------------------S----------------------------------S-------------------------
-------------S---------------------------------S--------------------------------
---------------------------------------------SS---------------------------------
----------------------------------------------------------------SSSSS-----------
-----------------S-----------SSS------------------------------------------------
S----S--------S---------S-S-----------------------------------------------------
---------SSSS-----------------------------------------------S------S----SSSS----
-------------------------------------------------------------------------------S
SS------------------------------------------------------------------------------
-----S--------------SS----------------------------------------------------------
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----------------------------------------S---------------------------------------
------------------------------------------------S------S--------------S----S----
-S-----S---------S------SSS------------------------SSSSSS-------------------S-S-
---------S----------------------------------------------------------------------
S------S--------------SSS-S-S--SSSSSSSSSSSSSSSSSSSSSSSSSSSS---------------------
---------S-S-S-S---S-----S---S-------S------S-------SSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_1065
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-----CAGACCAAAACCAGCCCTCA-------------------------------------------------------
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>reverse_2026
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-------------------------TCGCGTCGAGATTCTCAAGG-----------------------------------
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