>input_sequence_71411
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------------------------------------------------------------------ATGGAGCGGCGGAG
GGCTGCGTGGGCCGCGGTGCTGGTGGCGGTGGCCGCGTGCGCGGCGCTGCCGGCGACGACGACGGCGAACAAGATCAAAG
TCAACTGGCTGCCCAACACCAACTACTCCGGCTGGGAGCAGGAGCACGGGCCCTTCTACAAGGGCGACTGGCTCGGTACG
T----------------------ACTCTTTACGC----CTTGGAGCTCGAGCTGTAGCCCAGCCGCCGCCAGCAGATCTG
GTCGCCGGAGCGCGGCCGCGGAAGGAAATGCGAGGC-------CTTTCTTTCTTTCTTTCTTTCTTTCTCCGCCGCCGTA
TTACTCTAATCT-------CCGGCCGGCCGGCTGGCTGACTGACTGACTGACTCGGGGCGTCTTGTGCACA---------
-TGCAGTGTTCTACTACACGGCGGGGCAGGCGGACGTGGTGGAGGTGAACGAGTCCGGGTACAACCGGTGCGACGCCAGC
AACGCCATCTACAACTACAGCAAGGGCCGCAGCTTCGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAG
CTTCGGCTACTGCCCCGGCGGGATGCGGCTGGCCATCAAGTCCCAGAACCTGCCGCCGCCGTCGCCGCCGCCCTCCGCGC
AGCACCACCGCTCCGCCGCGCTCGCCGGGCCGCGCGCCGGGGTCGCCCTCTACGCCGCCGTCGCCGTCCTCGCCGCGCTC
CTCAGGGCGGTCTAG-----------------------------------------------------------------
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>chr5A_1_TraesCS5A01G395600
TTTCAGGCCTTACGGTGATGCACGTTCAGTGGAAGAAGATCTTTCTGTCGACTATGAAGACGTCTGTCACAACTTCGTCA
ATTTCAAAATAATGTCCCGGCTCAGTCTTTCGAAGATGCTCATAGGTGCACGGTGTGCGTACATGCGTTCACAAGGATAA
GCTTATGTATGAGCGTCTGCGTCCGTAATGTATACAATGTGTTG--AAGAAAATCAGCAAATCGAATCGACTTTCGAAAT
ACGCTGGGATGGCCGCCATGCCTATCAAGCGTCCAGACCACTCCACCAGTGGCTACCTACCCTACCA------TGCGCAG
GCTCTGTGTTGCGATGTTGCAGACCGACGCCGGCGGCCACACGCTCCCGCCCCAAAGTCAGTCA-CCACAGGCGAACGCA
CCAC---GGTAGATCTAGATCCCACGGGCGCACGGCCCCTCCAACCACGGATGCGCGCGCACCGGCCCGGCGACCGTGCG
CCGAGACCGCGCCGCGCCGTGCGCAGGCACCACCCGACCGCACGGCGGCGACCCACCACCGCAGGATCCGCGAACGGGCG
GCCACGATGGCGTCTCCCCGGCACAC-------CGCCTCCAGAGTTCCAGACTCCTGCCTG----GACCCCGCTCCCACG
GGAAAAAAATTCTATGAGACCAGGTCTCACGGATTAGCAGGTGAGACCCATCCTAATGGATGACACATGACATTCACAAA
TCACAAAGCATCCACTCCACCCCTCACCTGAAACCAGGGGAGGAGAGATTAGATGCTTTGTGATTTGTGAATGCCACATG
TCATTTATCAGGACGGGTCTCACCTGATTTATATGATCCGCTCCCACGTGCCCCCTCTCCTCTTTTTAAGACCGCGGTCA
GGCCGGCCACCGTCCCATCCCATCCCATCCCACCACCTTCCTCCTCTGCCCCCGCCCAGCGCGTTCCATTTT---GAAGC
AGGAAACAGCAGCGCGCACATCTCACTGTCCCTGGTTCGTCGTCCGACGAGGAAGAGGCGAGGGTGATGGAGCGGCGGAG
GGCTGCGTGGGCCGCGGTGCTGGTGGCGGTGGCCGCGTGCGCGGCGCTGCCGGCGACGACGACGGCGAACAAGATCAAAG
TCAACTGGCTGCCCAACACCAACTACTCCGGCTGGGAGCAGGAGCACGGGCCCTTCTACAAGGGCGACTGGCTCGGTACG
T----------------------ACTCTTTACGC----CTTGGAGCTCGAGCTGTAGCCCAGCCGCCGCCAGCAGATCTG
GTCGCCGGAGCGCGGCCGCGGAAGGAAATGCGAGGC-------CTTTCTTTCTTTCTTTCTTTCTTTCTCCGCCGCCGTA
TTACTCTAATCT-------CCGGCCGGCCGGCTGGCTGACTGACTGACTGACTCGGGGCGTCTTGTGCACA---------
-TGCAGTGTTCTACTACACGGCGGGGCAGGCGGACGTGGTGGAGGTGAACGAGTCCGGGTACAACCGGTGCGACGCCAGC
AACGCCATCTACAACTACAGCAAGGGCCGCAGCTTCGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAG
CTTCGGCTACTGCCCCGGCGGGATGCGGCTGGCCATCAAGTCCCAGAACCTGCCGCCGCCGTCGCCGCCGCCCTCCGCGC
AGCACCACCGCTCCGCCGCGCTCGCCGGGCCGCGCGCCGGGGTCGCCCTCTACGCCGCCGTCGCCGTCCTCGCCGCGCTC
CTCAGGGCGGTCTAGTGTAGCCGGTCTGGC-----GCTGGTTCTGAGCTCGTTTGTTTGATGGATTGGCTCGAAGT----
TTCCCCATTTCTTCATTTCTTTGGTGCGTGTGTG-----CTAGGATAGCAGAGTGGTAGTGCCACGGGCGGGCGTTCTTG
GTTGATTATTAGCGGTGTGGATTTGCGGAACCAAATGGTTACCGGCGCTTTGATTTATCAAGTGTGAGGAGTGCACTGGA
CTGGAGAGG-AGAAACTGTTTCTATGCTAATGATGATTTGTT---------------TTGCTCTGTGGAGAAGTAGTACT
CTCTTTTTCGGGGTGCTATCAGTGAC------------------------------------------------------
------------------TTCGGCACGGCTGGGCGGCTGGCCCGTACCACCAGCTGGAATTTGCGCGCGTAAACAAAATT
GCACATGCCGTGCAGAAAACGCTCGACGAGTGCCGAGATTTCAACATTGAGAGCATCTCCGGCCGTTGGTCTCTCAGGAG
GCGCAAAAAAACGCTTCATGAGGCGAGCCGGCGCAAAACGCACGCTGGGGTATAATGTCACTTAGTTGCGGCGCCCACGG
ATTTTGTGAAAGTTAAAGTGCAGCATAAATATGACACAAATTCAATCATTTTCAGCGAGTTCATACATATTTCGGCAAGT
TCAAACCAAATTCAACCAAACACGGCGACAGTTCATACATATTTAAAACATTTTACAAAAAAGAAAAAACACACTACTAG
GCCTGTCGTCTCCCTCGCCTCGCCGCTCGTCGCCATTCTACATGCCGAAGAGGCTGTAGAACCGCGTGTAGCCGCAGTCG
TCGTCGCCCCCGCTGCGGCCGCTGTCTCTGCTGCAACCCTCCCCCGGTTGGCGCGGCGGGTTGGACGGTCCGGGAGCGTC
CTCGTCGTCGTCGCTGTCGAGGATCACGACGCATGGCTGCCTCGTCTACGCGTGGCATGCGCGGGGACGCGCGTCGTCAC
GCCGTCCGTGAGGCATCAATAGCGGAGGCTGACCGGCGGGGCAGCGCGCGACAGCTTTGGCATTGATTCGCCGCGGG
>chr5D_1
TTTCAGCCCTTCCGGTGATGTGTGTTCATTGG----AGATCTTTCTGTCGACTACGAAGATGTATGTGATGACTTCATCA
GTCTCAAAATAATGTCCCCGCTCAGTCTTTCAGAGGTGCTCGTAGATGTACGGTGTGCGTACGGGCGTTCACAAGGATGA
GTTTATGTATGAGCGTCTGCATCTATGATGTATATAATGTGTTAAAAAGAAAACCTGCAAATCGAATCGACTTTCGAAAT
ACGCTGGGACGGCTGCCATGCCCATCAAGCGTCCAGACCACTCCTCCAATGG----CTACCCTACCA------TGCGCAG
GCTCCGTGTCGCGATGTTGCAAATCGACGCCGGCGGCCACACGCTCCCGCCCCAAAGTCAGTCA-CCACAGGCGAACGCG
CCACGGTGGTAGATCTAGATCCCACGGGCGCACGGCCCCTC-AACCACGGACGCGCACGCACCGGCCCGGCGACCGTGGC
CCGAGACCGCGCCGCGCCGTGCGCAGGCACCACCCGACCGCACGGCCGCGACCCACCACCCCAGGATCCGCGAACGGACG
GCCACGATGGCGTCTCCCGGGCACAC-------CGCCTCCAGAGTTCCAGACTCCTTCCTGCCTGGACC-----------
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-------------------------------------CCGCTCCCACGTGCCCCCTCTCCTCTTTTTAAGACCGCGGTCA
GGCCGGCCACCGTCCCATCCCA-------CCACCACCTTCCTCCTCTGCCCCCGCCCAGCTCGTTCCATTTTGAAGAAGC
AAGAAACAGCAGCGCGCACATCTCGCTGCTCGA-------CGTCGTCGGAGGAAGAGGCGAGGGTGATGGAGCGGCGGAG
GGCTGCATGGGCCGCGGTGCTGGTGGCGGTGGCCGCGTGCGCGGCGCTGCCGGCGAAGACGACGGCGAACAAGATCAAAG
TCAACTGGTTGCCCAACACCAACTACTCCGGCTGGGAGCAGGAGCACGGGCCCTTCTACAAGGGCGACTGGCTCGGTACG
CACGCGCGCGGTTACTTTT-----CTTTATACGC----CTTCGAGCTCGAGCGCGAGCCCACCCGCCGCCAGCAGATCTG
GTCGCCGGAGCGCGGCCGCGGAAGGAGATGCGAGGC-------CTTTCTTTCTTTCTTTCTCG--------GCCC---AA
ATACTCTAATCT-------CCGGCCGGCTGGCTGGCTGACT------------CGGGGCGTCTTGTGCGTG---------
-TGCAGTGTTCTACTACACGGCGGGGCAGGCGGACGTGGTGGAGGTGAACGAGTCCGGGTACAACCGGTGCGACGCCAGC
AACGCCATCTACAACTACAGCAAGGGCCGCAGCTTCGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAG
CTTCGGCTACTGCCCCGGCGGGATGCGCCTGGCCATCAAGTCCCAGAAGCTGCCGCCGCCGTCGCCGCCGCCCTCCGCGC
AGCACCACCGCTCCGCCGCGCTCGCCGGCCCGCGCGCCGGGGTCGCCCTCTACGCCGCCGTCGCCGTCCTCGCCGCGCTC
CTCAGGGCGGTCTAGCCTAGCCGATCTGGTCTGGT-----TTCCGAGTTCGTTTGTTTGATGGATTGTTTGG-AGT----
TTCCCCATTTCTTCATTTCTTTGGTGTGTGTTCCTAATCCTAGGCTAGGAGAGTGGTAGTGCCACGGGCA----TTCTTG
GTTGAC---TAGCGGTGTGGATTTGCGGAACCAAATGGTTACCGGCGGATTGATTTATCAAGTGTGAAGAGTGCACTGGA
CTGGAGAGAAAGAAACTGTTTCTACGCTACTGATTAGTTTAAATCTATGTTCATTGGTTGCGCTGTGGAGAAGTATACTA
CTTCCTCGGTAAAGAAATATAAGAGCATTTGGAGTAGTGATCTAAATGCTCCTACGTTTCTACATTTCTTTATTGAGGGA
GTAGTATTTTTGTATGGTTTCGGCACGGCTGGGCGGCTGGCCCGTACCACCAGCCGGAATTTGCGCGCGTAAACAAAATT
GCGGATGCCGTGCAGAAAACG--CGTCGAGTGCCGAAATTTCAACACTGA------------------------------
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>chr5B_188
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---------------------------ATGTATATAATGTGTTA--AAGAAAATCTGCAAATTGAACCGACTTTCGAAAT
ACGCTGGGATGGCTGCCATGCCTATCAAGCGTCCAGGCCACTCCTCCAATGG----CTACCCTACCACTACCATGCGCAG
GCTCTGTGTTGCGATGTTGCAAATCGACGCCGGCGGCCACACGCTCCCGCCCCAAAGTCAGTCACCCACAGCCGAACGCG
CCAC---GGTAGATCTAGATCCCACGGGCACACGGCCCCTC-AACCACG----CGCGCGCACCGGCCCGGCGACCGTGGC
CCGAGACCGCGCCGCACCGTGCGCAGGCACCACCCGACCGCACGGCCGCGACCCACCGCCCCAGGATCCGGGAACGGACG
GCCACGATGGCGTCTCCCCGGCACACCGCCTGGCGCCTCCAGAGTTCCAGACTCCTGCCTG----GACC-----------
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-------------------------------------CCGCTCCCACGTGCCGCCTCTCCTCTTTTTAAGACCTTGGCCA
GGCCGGCCACCGTCCCATCCCA-------CCACC---TTCCTCCTCTGCCCCCGCCCAGCTCGTTCCATTTTGAAGAAGC
AAGAAACAGCCGCGC--ACATCTCGTCGCCCCTGGTTCCTCGTCGGACGAGGAAGAGGC------GATGGAGCGGCGGAG
GGCTGCGTGGGCCGCGGTGCTGGTGGCGGTGGCCGCGTGCGCGGCGCTGCCGGCGACGACGACGGCGAACAAGATCAAGG
TCAACTGGTTGCCCAACACCAACTACTCCGGCTGGGAGCAGGAGCACGGCCCCTTCTACAAGGGCGACTGGCTCGGTACG
TGCGCGCGCGGTTACTTCACTTTACTCTTTACGCCTAGCTTCGAGCTCGAGCTCGAGCCCAGCCGCCGCCAGCAGATCTG
GTCGCCGGAGCGCGGCCGCGGAAGGAGATGCGAAGCCGCCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTCCGCCG---TA
ATACTCTACCTCCGGCCGGCCGGCCGGCTGGCTGACTGACT------------CGGTTCGTCTGGTGTTGCGCTCATGCA
TTGCAGTGTTCTACTACACGGCGGGGCAGGCGGACGTGGTGGAGGTGAACGAGTCCGGGTACAACCGGTGCGACGCCAGC
AACGCCATCTACAACTACAGCAAGGGCCGCAGCTTCGCCTTCGAGCTCAACGAGACCAAGACCTACTACTTCATCTGCAG
CTTCGGCTACTGCCCCGGCGGGATGCGGCTGGCCATCAAGTCCCAGAAGCTGCCGCCGCCGTCGCCGCCGCCCTCCGCGC
AGCACCACCGCTCCGCCGCGCTCGCCGGGCCGCGCGCCGGGGTCGCCCTCTACGCCGCCGTCGCCGTCCTCGCCGCGCTG
CTCAGGGCGGTCTAGTCTAGCCGATCTGATCTGGTGCTAGTTCCGAGCTCGTTTGTT---------GTTTGG-AGTTTCC
TTCCCCATTTCTTCATTTCTTTGGTGTGTGTTCCTAGGATAGGA----GAGAATGGCAGTGCCACGGACG----TTCTTG
GGTGAG-ATTAGCGGTGTGGATTTGCGGGACCAAATGGTTACCGGCGGATTGATTTGTCAAGTGTGAAGAGTGCACTGGA
CTGGAGA-------------------------------------------------------------------------
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>SNPs
------S----S--------SSS-----S---SSSS------------------S-----S--S---S-SS-----S---
S-S---------------S------------SS--S-----S---S--S-------------SS--------------S-
-S------------------S--SS-S-------S--------S-----------S------------------------
-------------S------------------------------S---S---SSSS------------------------
---------------------S-S-------------------------------------------------------S
-----------------------------------------S---------S--------------------------SS
----------------------------------------------S-------------S----------------S--
---------------------------------------------------------------------SSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-------------------------------------------
----------------------SSSSSSS-------------------------------S-------------------
-S----------------------S---S---------S-----S-----------------------------------
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--------S-----------------------------------------------------------------------
-----------------------------------------S-----------SS-------------------------
--------------------------S------------------------------------------------SSS--
S---------------------------S------------SSSSSSSSSSSS---------------SSS---------
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------------------------------------------------S-------------------------------
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----------------S------S-----S--------S----S-----------------------SS-S-S-------
--------------------------S----SSS----------S---S---------------------SSSS------
-----SS----------------------------------------SS------------------S------------
--------S---------------S----S----S-S--SSS-------------------S-------------SSSSS
--SSS-SSSSSSSSSSSSSS-SSSS-------------------------------------------------------
------------------------------------------------------S-------------------------
--SS-----------------SS--S----------S---------S---SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_754
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--------------CTCCACCCCTCACCTGAAAC----------------------------------------------
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>reverse_2355
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----------------------------------AAAACGCACGCTGGGGTATA--------------------------
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