>input_sequence_71406
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---------------------------------------------------------------ATGGACCCGGCCCAGGG
AGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATGTATAAATAGGTTCCTCCCCCGTCGACTCTGCACGCCTTATC
ACCACACAACCCCATACACACACGGTTCCTCAGATTACGACTACGATCGAGGAAGAGGAAGA------------------
---AGA-TACAATATGGCCCTGGGAGACGACTCTCCGGCCTCCTACATCCGCATGGTATGTGCTACTACAATCGTCGTCT
TCCCATCCCCTAATTCG--TACCTTGGTCTGCTGCTCCCTTGGTTCTTCTAGTTCTAGCTAGCAGATAGATGATCACCAG
CATCA-----------------------------GCATGCACAGGACATTGATTTCTCACGTCGACATCAGAATTGGTCA
ACTAATTAAGGTGGGATTTTTAATTTGCAGGTTCACCATCTGATAGAGAAGTGCATGACGTTCGGGATGAGCATGGAGGA
GTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCCGGTCGTCACCTCCACAGGTCGGTC--CGTCTCAAATCAGTT
AC---TTCCTCTGATCAGCAGGAATACACTTATCTGTACTGACGCTGAGTTGGCGTGCTTGCAGTATGGAAAGAGCTGGA
GAAGGAGAACAAGGAGTTCTTCGACAGATACAACAAGCAGTTGAGATCAGAAAAGGGAGGCCGAAGCAGCTGCAGCAGCA
GCAGCGACAGCAGCTCCTAA------------------------------------------------------------
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>chr4A_1_TraesCS4A01G101700
ATAGGAGTATATGCGTGCTCGCATAGTTGTCTGGTGCAAGAAAAAAGACTTGGAGCAGTAGACCGCAGACGAGCGTGACT
GCAAGTCTGCCCGCGGCAGCACTAGCAGCCACTCCGAACCGGGACCAATTGATTTGAATGAAAATTTTGGGGCCGACGGA
TCTGCGCGGGAGGCAGCGTGCATGCGTGACAGCTACCCCGCCATGT-AAGCCCC-AAGCCCCTGCCCGCGCACCACGCAA
GCATTTTGTCTGTCCGATTCGTCCTGGGCCCCGTCGCACGCCCCGCTCCATCCATGC-------------AATGCAATGC
ATGTTGTGCACCGGGAGACGGCGGGATCCACCGTACGCTGTCGCCTCTAGCGCTAGCCATCACAGCAACTCAGCAAGCTT
CGTGAGTGAGTAGTATGATTGCTTGATTGGTTGCGATGCTCACTGCTCTCTGC-----GGTGGAAGTACACAGTGAACCG
TCGTCACATCGCCATGACACCGAATTGACCGCGCAACAAACCCCGACCGTGCGGGACGTCCACTACAACACCACACTATT
TGCCAGTGACTGAATCTGCACTTGAGGATCCTCAGGCGAGCCGAGCCGGCGAGGGGAACAGCACAGGGGCC---AGAAAG
AATGAAAGAAAAAGAGCGGCGTGGAATCCGGAATCCCCACGTTGGCCGTCGCGACGTGGCCGGCGGGGCCAGGTGGCACG
TGAAGGCACGAGGTGCGTGTCCGCCCAGCCTCTTCCTACGCCCGGACCCTTCTTCGGGCATGGCATGGACGACCTGGAAG
CGGACAGCCGAGCCTACGACGGGATAGGGATGAGATATTTGCCACACCATCTCCACATCCCTTTCCGATCTCTCGCACGG
CGAATCGCCTCTCCTCCAATCCCCTGCCGGCGCCCACGTGAACGCACCCGCCCGCATTTGCGGCCCCAGCCTCCGCGCGC
CACGTCCATACGCCGGCCCGCTGAGTCACGCCGCCGGGGGGAAGAAACGCCGCACGCCGGTCCATGGACCCGGCCCAGGG
AGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATGTATAAATAGGTTCCTCCCCCGTCGACTCTGCACGCCTTATC
ACCACACAACCCCATACACACACGGTTCCTCAGATTACGACTACGATCGAGGAAGAGGAAGA------------------
---AGA-TACAATATGGCCCTGGGAGACGACTCTCCGGCCTCCTACATCCGCATGGTATGTGCTACTACAATCGTCGTCT
TCCCATCCCCTAATTCG--TACCTTGGTCTGCTGCTCCCTTGGTTCTTCTAGTTCTAGCTAGCAGATAGATGATCACCAG
CATCA-----------------------------GCATGCACAGGACATTGATTTCTCACGTCGACATCAGAATTGGTCA
ACTAATTAAGGTGGGATTTTTAATTTGCAGGTTCACCATCTGATAGAGAAGTGCATGACGTTCGGGATGAGCATGGAGGA
GTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCCGGTCGTCACCTCCACAGGTCGGTC--CGTCTCAAATCAGTT
AC---TTCCTCTGATCAGCAGGAATACACTTATCTGTACTGACGCTGAGTTGGCGTGCTTGCAGTATGGAAAGAGCTGGA
GAAGGAGAACAAGGAGTTCTTCGACAGATACAACAAGCAGTTGAGATCAGAAAAGGGAGGCCGAAGCAGCTGCAGCAGCA
GCAGCGACAGCAGCTCCTAATGATCAACAGGAGATGCGTGCTGCT-----TAGATGTTAGCCATTCTGCACTTAGTAGAA
CGAATAATTAGAAGATCGATGGGGCGGGAAGTCAGCTAACGCGACACGATCTATGTGTGCTGGTGCATGTACAG------
----------------GA--------------ATCACAAGCCATCTCGTACTGTTGCCATATTCTTCAGATG--------
--TAATTGTACTCATCATGTATCCATCTCCCACAGCTCTCGGTTCAGACTTTTCATACCTCTGTGGAGATTACCTACGGC
ACCACTGTGTGCTAATCGTCCAAGCAAAGCTTTATTCTGTAATTGGATCTCCGTC-------------------------
-TTCTCTTTCTAACGAGCAAAAAAAAAAA---CGGTTGTCCTGCACAGAAAAAACACTGTTCTCCCCTAACCAGAGATAC
TAGTACACATGTTCACGGGAAAACGAAGGAAACATGCTA-----TATGCTCAGCGAGAAGTTGGTGTACACGAACGTGCT
CCGTGACGGGATGGGACATCTTGTCGTTGGGTCGCTGAAGCCAGCGTGGAACGGTCCAAACAAGGAAAGTTTGCACCGGC
GCCATACGTGTGTGCAGTGCCGTGGAATCGGTGATGGGATTCTGCTGCACGGGACAA-----GGACCCCTCGCCTCTTCT
TTCCTCTGATTTTGACGTGACAAGCAACAACTTCGCGAGGCAAAATGGGCAAAAATAACCTCGAAACGCCACTAATTCAC
AAAGGGTGAAAAAAGGGTGAAATTTTTTCACCCAACTAATCCTTT----------------------------------T
GTGTAGTGGCTGATTAATAGGTGCTACACGCCT-GCGGTGTGGCACCCTGAGGCTCGGCAAGGGCCCACCTCAC-TCTAG
TTGTACAACGTCTAGCCGACATGCGCTACACTGCTTTGTGTAGCGCCTAGACAAAAGACGCTACACGTGCACTTACTAAC
CGCCAC------GGCCGGTCCTCCCTAGCCTAGTCCCCACACAAACTTCAAGAGCATTTGAACAGAGGACGTCTGGACGC
GATTCTCTCTCTCTCTCTCACTTCTTAAATTC
>chr4B_70
---------------------------------------------------------------------CGAGCGTGACC
GCGAGTCTGCCCGCGGCAGCACTAGCAGCCACTCCGAATCGGGGCCAATTGATTTGAATGAAAATTTTGGGGCCGACGGA
TCCGCGCGGGAGGCAGCGTGCATGCGTGACAGCTACCCCGCCATGTAAAGCCCC-AAGCACCGGCCCGCGCACCACGCAA
GCATTTTGTGCGTCCGGTTCGTCCTGGG-CCCGTCGCACGCCCCGCTCCATCCATGC-------------AATGCA----
-TGTTGTACACCTGGAGACGGCGGGATCCACCGTACGCTGTCGCTTCAAGCGCTGGCCATTACAGCAAGCTA--------
-----------------------------------ATGCTCACTGCT-----C-----GGAGGAAGTACACAGTGAACCG
TCGTCACATCGGCATGACACTGAATTGACCGCGCAACAAACCCCGACCGTACGGGACGTCTACTACAACACCACACTATT
TGCCAGTGATTGAATTTGCACTTGAGGATCCTCAAG-----TGAGCCGGCGAGGGGAACAGCACAGGGGCC---A---AG
AAAGAAAGAAAAAGAGCGGCGTGGAATCCCGAATCCCCACGTTGGCCGTCGCGACGTGGCCGGCGGGGCCAGGTGGCACG
TGAAGGCACGAGGTGCGTGTCCGCCCAGCCTCTTCCTACGCCCGGACCCTTCTTCAGGCATGGCATGGACGACCTGGAAG
C----AGCCGAGCCTACGACGGGATAGGGATTAGATATTTGCCACAGCATCTCCACATCCCTTTCCGATCTCTCGCACGG
CGAATCGCCTCTCCTCCAATCCCCTGCCCGCGCCCACGTGAACGCACCCGCCCGCCTTTACGGCCCCCGCATCCGCGCGC
CACGTCCATGCGCCGGCTGGCTGAGCCACGTCCCCTAGGAGG---------GCACGCCGGTCCACGGACCCGGCCCAGGG
AGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATGTATAAATAGGTTCCTCCCCCGTCGACTCTGCACGCCTTATC
ACCACACAACCCCATACACACACAGTTCCTCAGATTACGATTACGATCGAGGAAGAGGAAGAGCAAGAGGAATAGCAGGA
AGAAGATTACAATATGGCCCTGGGAGACGACTCTCCGGCATCCTACATCCGCATGGTATGTACTAGTACAATCGCCTTCT
TCCCATCCTTCAAACTGTATACCTTTATCTGCTGCTC-------TC------TTCGAGCTAGGAGATAGATGATCACCAG
CTACGCTTTTCGATCGGGTCACCTCACCGGGCTTGCATGCGCAGGACATCGACTTCTCACGTAGACATCAGAATTGGTTA
ACTAATTAAGGTGGGGTTTT-AATTTGCAGGTGCACCATCTGATAGAGAAGTGCATGACGTTCGGGATGAGCATGGAGGA
GTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCCGGTCGTCACCTCCACAGGTCGGCCG--GTCTCAAATCAATT
ACTGCTCCCTCTGATCAGCAGGAATATATTTATCTGTACTGACGCTGAGTTGGCGTGCTTGCAGTGTGGAAAGAGTTGGA
GAAGGAGAACAAGGAGTTCTTCGACAGATACAACAAGCAGTTGAGATCAGAAAAGGAAGGCCGAAGCAGCAGCAGCAGCA
GC---GACAGCAGCTCCTAATGACCAACAGCAGATGCGTGCCGCTTGCTCTAGATGTTGGCCATTCTGCACTTAGTAGAA
CGAATAATTAGAAGACCGATGGCGCGGGAGGTCAGCTAACGCGACGCGATCTATGTGTGGTGGTGCATGTACAGCCGTAC
AGGGTCGGGTTGGCAGGA--------------ATCAAAAGCCAGCTCGTACTGTTGCGATATTCTTCAGATG-------T
ACTAATTGTACTCGTCATGTGTCCCGTCTTCTCTC---------------------------------------------
-CCACCGTGTGCTAATGGTCCAAGCAACGTAATATGGCACGCAAAAAATGCTCTGCTCCTGCAATCGGATTCTCACTTTT
TTTCTTCTCATAACGAACAAAAAGAAGAA-CGCGGTAGTCCTGCACAGAG-AAACACTGTTCTCCCCTAACCAGAGATAC
TAGTACACATGATCACGGGAAAATGGAGGAACCATATAC--------GCTCGGCGAGAAGTAGGTGTACACGAACGTGCT
CCGTGACGGGATGGGACATCTTGTCTTTGGCTCGCTCAAGCCAGCATGGAACGGTCCAAACAAGGAAAGTTTGCATCGGC
GCCATACGTGTGTGCAGTGCCGTGGAATCGGTGATGGGATTCTGC---ACGGGACAAGGACCGGACCCCTCCCCTCTTCT
TTCCTCTGATTTTGACGTGACAAGCAACAACTTCGCGAGGCAAAATGGGCAAAAATAACCTCGAAACGCCACTAATTCAC
AATGGGTGAAT-----------TTTTTTCACCAGTTGACCCTTTTGTGTAGCGGACC-----------CTACACTACACT
GAGTAGCGGCTGATTAATAGGTGCGACACGTCTGGCGGTGTGGCACCCTAAGGCTGGGCAAGGGCCCACCTCACC-----
----------TCTAGCCGACATGCGCTACACTA------------CCTAGACGAAAGGCGCTGCACGCGCACTTACTAAC
CGCACTGCCGCGGGCCGGCCCTCCCTAGCCCAGCCCCGACACAAACCCCATGAGCATTTGAACAGAGGAGT------CGC
GATTCCCTCTCTCTC-----------------
>chr4D_73
------------------------------------------------------------------------GCGTGACT
GCGAGTCTGCCCGCGGCAGCACTAGCAGCCACTCCGAGTCGGGACCAATTGATTTGAATGAAAATTTTGGGGCCGACGGA
TCTGCGCGGGAGGCAGCGTGCATGCGTGACAGCTACCCCGCCATGT-AAGCCCCCAAGCGCCTGCCCGCGCACCACGCAA
GCATTTTGTCTGTCCGGTTCGTCCCGGGCCCCGTCGCACGCCCCGCTCCATGCCTCCATCCATGCAATGGAATGCA----
-TGTTGTACACCGGGAGACGGCGGGATCCACCGTAAGCTGTCGCCTCTAGCGCTAGCCATGACAGCAAGCTTCGTGATGA
-----GTGAGTAGTATGATTACTTGATTAGTTGCGATGCTCACTGCT-----CTATGGGGAGGAAGTACACAGTGAACCG
TCGTCACATCGCCATGACACCGAATTGACCGCGCAACAAACCCCGACCGTGCGGGACGTCTACTACAACACCACACTATT
TGCCAGTGATTGATTCTGCACTTAAGGATTCTCAAG-----CGAGCCGGCGAAGGAAACAGCACCGGGGCCAGAA---AG
AATGAAAGAAAAAGAGCAGCGTGGAATCCCGAATCCCCACGTTGGCCGTCGCGACGTGGCCGGCTGGGCCAGGTGGCACG
TGAAGGCACGAGGTGCGTGTCCGCCCAGCCTCTTCCTACGCCCGGACCCTTCTTCGGGCATGGCATGGACGACCTGGAAG
C----ACCCGAGCCTACGACGGGATAGGGATTAGATATTTGCCACAGCATCTCCACATCCCTTTCCGATCTCTCGCACGG
CGAATCGCCTCTCCTCCAATCCCCTGCCCGCGCCCACGTGAACGCACCCGCCCGCATTTGCGGCCCCAGGCTCCGCGCGC
CACGTCCATGCGCCGGCTGGCGGAGCCATGCGGCCTGGGAGG---------GCACGCCGGTCCACGGACCCGGCCCAGGG
AGCCGGCGGGCGACGCGGTGTCCTCATCCATGGTGCATGTATAAATAGGTTCCTCCTCCGTCGACTCTGCACGCCTTATC
ACCACACAACCCCATACACACACAGTTCCTCAGATTACGATTACGACCGAGGAAGAGGAAGAGCAAGAGGAATAGGAGGA
AGAAGA-TATAATATGGCCCTGGGAGACGACTCTCCGGCCTCCTACATCCGCATGGTATGTGCTACTACAATCGTCGTCT
TCCCGTCCCCTAATTCG--TAGCTTGATCTGCTGCGCCCTTGGTTC------TTCTAGCTAGCAGATAGATGATCACCAG
CATCA-----------------------------GCATGCACAGGACATTGATTTCTCACGTCGACATCAGAATTGGTTA
AGTGATTAAGGTGGGCTTT--AATTTGCAGGTGCACCATCTGATAGAGAAGTGCATGACGTTCAGGATGAGCATGGAGGA
GTGCATGGAGGCGCTGTCCAAGCGCGCCGACGTTCAGCCGGTCGTCACCTCCACAGGTAGGCCGGCGTCTCAAATCAATT
ACTGCTTCCTCTGATCAGCAGGAATATATCTATCTGTACTGACGCTGAGTGGGCGTGCTTGCAGTGTGGAAAGAGCTGGA
GAAGGAGAACAAGGAGTTCTTCGACAGCTACAACAAGCAGTTGAGATCAGAAGGCCGAAGC---AGCAGCAACAGCAGCA
GC---GACAGCAGCTCCTAATGACCAACAGGAGATGCGTGCTGCTTGCTCTAGATGTTGGCCGTTCTGCACTTAGTAGAA
CGAATAATTAGAAGATCGACGGCGCGGGAGGTCAGCTAACGCGACGCGATCTATGTGTGGTGGTGCATGTACAG------
----------------GGTCAGGTTGGCAGGTATCAAAAGCCAGCTCGTACTGTTGCGATATTCTTCAGATGGAGTACGT
ACTAATTGTACTCATCATGTGTCCCATCTTCTCTC---------------------------------------------
-CCACTGTGTGCTAATGGTCCAAGCAACGCATTACGCCACGCAAAAAATGCTCTGCTCCTGCAATCGGATTCTCATTTTT
TTTCCCCTCATAACGAACAAAAAGAAAAAGCGCGGTAGTCCCGCACAGAG-AAACACTGTTCTCCCCTAACCAGAGATAC
TAGTACACATGATCACGGGAAAATGGAGGAAACATACTACTGTTTATGCTCAGCGAGAAGTAGGTGTACACGAACGTGCT
CCGTGACGGGATGGGACATCTTGTCTTTGGCTCGCTCAAGCCAGCATGGAACGGTCCAAACAAGGAAAGTTTGCATCGGC
GCCATACGTGTGTGCAGTGCCGTGGAATCGGTGATGGGATTCTGC---ACGGGACAA-----GGACCCCTCCCCTCTTCT
TTCCTCTGATTTTGACGTGACAAGCAACAACTTGGCGAGGCAAAATGGGCAAAAATAACCTTGAAACGCCACTAATTCAC
AATGGGTGAA-----------ATTTTTTCACCAGCTGACCCTTTTATGTAGCGTCCGACAGGTCGGCGCTACACTAGACT
GAATAGCTGCTGATACACGCCTGA-----------CGGTGTCGCATCCTGAGGCTGGGCAAGGGCCCACCTCACCTCTAG
TTGTGCAGCGCCTAGCCGACATGCGCTACACTACCTTCTGTAGCGCCTAGACGAAAGACGCTACACGTGCACTTACTAAC
CGC-----CGCGGGCTGGCCCTCCCTAGCCTTGCCCCCACACAAACCCCAAGAGCATTTGAATAGAGGAGT------CGC
GATTCCCTCTCTCTC-----------------
>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS-----------
--S-----------------------------------S-----------------------------------------
-----------------------------------------------------------S--------------------
----------------S-----------------------------------------------------------SSSS
S------S----------------------------------------------------S-------SSS-SSSSSSSS
SSSSS---------------S-------S------------------SSSSS--------S-------------------
------------------------------------------------------------S-------------------
---------S------------------------S-SSSSS----------------------------------SSS--
-----------------------------S--------------------------------------------------
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-SSSS--------------------------S--------------S---------------------------------
----------------------------S---------------------------------------------------
---------S-------SS------S---------S---S-SSSSSSSSSS-------------S---------------
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-----------------------S----------------S---------------------------------------
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--------------------------S-------------------SSSSSS----------------------------
------------------------------------------------------------------------------S-
---------------S----S-----------S-----------------------------------------------
-------------------------------------------------------------S---------------S--
--------------------------S-S------------------------------------S--------------
----------------------------------------------------------------------S---------
--SSS------------------S----------------------------------S---------------------
----------------------S------S---------------S-------------S--------------------
------------------------------------S------S-------------S----------------------
--------------------S---SSSSSS-S-SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
S---------------S----------S--S----S-SSSSSSSSS-SSS-SS-S-------------------------
------S-SS------S------S------------S------------SS-----------------------------
-----------S-----------S-S---------S-------------------------S------------------
-------------------------S----S-----S--------S-----------------------------S----
---------------------------------------------SSS-----------------------S--------
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--S-------SSSSSSSSSSS-----------SSSSS-SS-S--------------------------------------
-S----S-----------------S-----S------------------------S------------------------
----S--S------------------------S-S--S--------------S---------------------------
---SSS------------S--------------S------------SS---------------------SSSSSSSS---
-----S---------SSSSSSSSSSSSSSSSS
>forward_402
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--------------------------------------------------------------CAGCAACTCAGCAAGCTT
CG------------------------------------------------------------------------------
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>reverse_1763
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--AGCGACAGCAGCTCCTAATG----------------------------------------------------------
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>forward_1330
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------------------------------GCTGCTCCCTTGGTTCTTCT------------------------------
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>reverse_2302
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-------------------------------------------------------------TGGTGTACACGAACGTGCT
C-------------------------------------------------------------------------------
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