>input_sequence_71401
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------ATGGAATTCCAGGGAGAGGAGGACGGGGACG
GCAGCGACGTGGGCGACGGCGCCCCGCCCGCGGCACCTCACCGCAGCGCCACCGCAAACGGGCCGGCAGACAACATGCAA
GCGGAGGCGAGGCGGCAGTACCACGAGTGCCTCCGTAACCACGCGGCGGCCGCCGGCGGGCACGTCCTGGACGGATGCTG
CGAGTTCATGCCGGCCTCCCCCGAGGACCCACTCGCATGCGCTGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGCGACC
CCTCGCCGGGGCGCGCTCACTTGCCGCTGCTGGCTGCCAGCGCGCGCGCACCATTGCTGCTCCCGCCGGCGGCGAGCAAG
CACCCGCACCAGCGCTTGCCGTTCCCCTACGGCCTCGCGGCCAGCGGCGGCACCGGCACGACGACCGAGTCCTCCAGCGA
GGAGCGTCGTGGGCCGTCGCCGGCACCGCGGAAGCGTTCCAGGACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGG
AGTTCGCGGAGCGGGTCGGGTGGAGGCTGCAGCGGCAGGACGAGGCGATGGTGGGGCATTTCTGCGCGCAGGCCGGGGTC
CGGAGGCAGGCGCTCAAGGTCTGGATGCACAACAACAAGCAGAGTAGCAGCGGTAGGAGGCAGCAGCAG------GAGA-
--AGCAGCTTCAGGAGCATAGACAAGAGCAGCAG------TAG-------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>chr3B_1_TraesCS3B01G258400
TGGCAGCGGCCCTTCAGCCGTTGCGGGGTGTTGGCGAAGCCTCCCCCTTCCTTCTTCCCTATCTTGGTCCTTCCTCCATG
GTGGATATGGTCTTGCTGCAACAATGGAGGTGTGACGACTCATGGAAGATAGATTTGAGATGGATGCCGGCGACTAGCGT
TGGAGGTGTATAGATAGAAGGGCTCCATGGGCCTTCTCTATGGATGTGACTTCTCCCCTTTGATCCAAAGATTCTAGAGG
AGCCCAATCCTCGCCCAATACCTCCCTTGGTTTCTAGGGAACTCGTAGGAACAAATATGGATAAAATCGGTGAATAATCA
TAGAAGTTATGGTTGATTCTTCGGTCAAAAATGGGTGGTATGCCCGTGCATGGTCGTAAAATACACAGAAATATTTCTTA
AATACATGGTGAACATTTC-TTTTAAATACACGGTGATCTTTTCTTAACATATGGTGACCATTTATCTAAATACATGGAG
GACAATAATATGTTGAACTTTTTTAAGGCATAGGTTGAATTTTTGTAAAGATATGGTGAACGATTTTC-AAATATACGAT
GAACATTGTTTTAAACACATGATGATCA-TTTTTCTTAAATACATTGTGATCGGTTTCTATAGATAAGTAAAATAAAAAT
TATTTTCCTAAATATATTTTAAATTTTCAAAATATATATAAACTGATGAAGTCGAAATGTCAAATAAAAATGGTAAGAAA
AAGAAAGCCGACGAGTCTGACGAGACCGTACCAAATATATAACGCCAACGAAAGGAAAATCAGCAGTGTAATGCAGATGC
AGACTCTTTCTCCGGCTGGCTGAGGGCGATATATAGACGCGCCCGACC--ACCTAGCGTGACGGTTCCCAGAAATATCCC
AGACATGACCCCAACCGCGAGCACAACGT--ACGCACTATTCCCCACCAAAGACGT--AATCGTCAGCCTTGGCGTGCTG
CAGTTTGACAAGCACAAGCACACGCGCGCGCTCTATTTCTATACGCGCAATGGAATTCCAGGGAGAGGAGGACGGGGACG
GCAGCGACGTGGGCGACGGCGCCCCGCCCGCGGCACCTCACCGCAGCGCCACCGCAAACGGGCCGGCAGACAACATGCAA
GCGGAGGCGAGGCGGCAGTACCACGAGTGCCTCCGTAACCACGCGGCGGCCGCCGGCGGGCACGTCCTGGACGGATGCTG
CGAGTTCATGCCGGCCTCCCCCGAGGACCCACTCGCATGCGCTGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGCGACC
CCTCGCCGGGGCGCGCTCACTTGCCGCTGCTGGCTGCCAGCGCGCGCGCACCATTGCTGCTCCCGCCGGCGGCGAGCAAG
CACCCGCACCAGCGCTTGCCGTTCCCCTACGGCCTCGCGGCCAGCGGCGGCACCGGCACGACGACCGAGTCCTCCAGCGA
GGAGCGTCGTGGGCCGTCGCCGGCACCGCGGAAGCGTTCCAGGACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGG
AGTTCGCGGAGCGGGTCGGGTGGAGGCTGCAGCGGCAGGACGAGGCGATGGTGGGGCATTTCTGCGCGCAGGCCGGGGTC
CGGAGGCAGGCGCTCAAGGTCTGGATGCACAACAACAAGCAGAGTAGCAGCGGTAGGAGGCAGCAGCAG------GAGA-
--AGCAGCTTCAGGAGCATAGACAAGAGCAGCAG------TAGCCATGGCAGGAGACAGGTTCCATAGTACAGTAGGAGG
CAACGCTCCTCGCGCCCTTGTAAAGTTTTTAACTGTTGGAAAGTTCTTATGTTCTTTTTCACTATCTTCTAATTGGGCTG
ATCACTGTTGCTTCTCTGTCATATCAGTGCATGATCATTCCTGGTAGGAGCATTGGTTGGATTGGATTGGATTGGGATAT
TTCTTTTGGTTATTTTTCTGTATACATTTTTTTACTATAATATAAAGAAAAACACTGTCTACACAATGT--AGTACGCTG
TATTTC-------ATTTTATTTTCGAGTTGGTGAACTACGCTGTATTATAAGCCTTAATTCATATACTGGTGCCCTTAAA
ATTAAAGAAACCATGAGCACATTCATTCTGATAATCGCAATCGATGTCAAAAG-AGTGTCTATTGGATGGTTGATTTTGC
GTTTACCGAATCAAAATGGGTTGCCGAGGCATGCGACATAGCCTGACAGCAACTGGATTATACCAGGCTTAATACAAGTG
GACGGCTAGATTTCCACGCGGGACAGGTAATCGCATTGCCTGTTGTGTCCGCATCTGTTATCTTTGAGTTGGATTACAAG
GATTTTGTTTGAAGGAATTGTGAGGACCATGGTGCGAGGGAGAAAAGGTTGACAAGGATGCCATGGGTTGGATACCCCTC
AAGATAACAGGCAAGCAAAAACGAAAGGAACTTCAACATCTTGAGATCTTGCACTATTCGCAGCTTATAAATTCTTGAGA
AGAGTTCCACTCGAATCTTCATGAGGTGAAAAGGACAAATAACCACTAGTTTTATAAATATGGATTGAGCTATACAACCA
TATAAGTGAAGATTTGGACATTAAATCATAACCGGTTTAAAATGTAACGGCCCTAACAGAGTGGCGGCCGTTAATATGAG
CACGAAATTGATTCCGAATAGAAAGTGCTATCAGAAATTCACTGTCGACCATAAGAACAAGGTACTCCCTCCATATAAAT
ATATCTAGCATAA
>chr3A_1
TGGCAGCAGCCCTTCAGCCGTTGTGGGGCGTTGGCGAAGCCTCT-CCTTCCTTCTTCCTTGTCTTGG-CCTTCCTCCATG
GTGGATATGGTCTTGCCGCAGCAATGGAGGTGTAACGACTCGTGGAAGATAGATTGGAGATGGATGCCGGCGACTAGCGT
TGGAGGCGTATAGATAGGAGGCCTCCACAGGTCTTCTCTATGGATGTGACTTCTCCCCTTTGATCCAAGGATTTTAGAGG
AGCTCAATCCCCACCCAATATCTTCCTTGGTTTCTAAGG-ACTCATAGGAACAAACCTGGAC-AAATTGGTGAATAATCA
TGAAAGTTATGGCTGATTCCTCAGCCAAAAATGGGCGGTATGCCTGTGCATAGTCGTAAAATACACATAAACATTTCTTA
AATACACAGTGAAACATTTTTTTTAAATACACAATGATCTTTTCTTAACATATGGTGACTATTTCTATTAATACATGGTG
GACAATAATATGTTGAACTTTTTTAAGGCATAGGTCAAATTTTTGTAAAGATATGGTGAACATTTTTT-AAATATACGAT
GAACATTGTTTTAAACACATGACAATCGTTTTTTCTTAAATACATTGTGATCGGTTTCTATAGATAAGTAAAATAAAAAA
TAGTTTCCTAAATATTTTTTAAATTTTAAATATATATATAAACTGATGAAGTCGAAAGGTCAAATAAAAATGGTAAGAAA
AAGAAGGCAGACGAGTC-GACGAGACCGTACCAAATAAAAATGGT-------AGGAAAATCAGCAGTGTAATGCAGAGGC
AGACTCTATCTCCGGCTCGCTGAGGGCGACATATAGACGCGCCCGACCCAACCTAGCGTGACGGTTCCCAGAAATATCCC
AGACATGACCGCAACCGCGAGCACAACGTTGACGCACTATTCCCCACCAAAGACGT--AATCGTCAGCCTTGGCGTGCTG
CAGTTTGACAAGCACACGCGCACGCGCGCGCTCTATTTCTATACGCGCAATGGAATTCCGGGGAGAGGAGGACGGGGACG
GCAGCGACGTGGGCGACGGCGCCCCGCCCGCGGCACCTCACCGCAGCGCCACCGCAAACGGGCCGGCAGACAACATGCAA
GCGGAGGCGAGGCGGCAGTACCACGAGTGCCTCCGTAACCACGCGGCGGCCGCGGGCGGGCACGTCCTGGACGGATGCTG
CGAGTTCATGCCGGCCTCTCCCGAAGACCCACTCGCATGCGCGGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGCGACC
CCTCGCCGAGGCGCGCCCACTTGCCGCTGCTGGCTGCCAGCGCGCGCGCACCATTGCTGCTCCCGCCGGCGGCGAGCAAG
CACCCGCACCAGCGCTTGCCGTTCCCCTACGGCCTCGCGGCCAGCGGCGGCACCGGCACGACGACCGAGTCCTCCAGCGA
GGAGCGGCGTGGGGCGTCGCCGGCGCCGCGGAAGCGTTCCAGGACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGG
CGTTCGCGGAGCGCGTCGGGTGGAGGCTGCAGCGGCAGGACGAGGCGATGGTGGGGCATTTCTGCGCGCAGGCCGGGGTC
CGGAGGCAGGCGCTCAAGGTCTGGATGCACAACAACAAGCAGAGTAGCAGCGGTAGGAGGCAGCAGCAG------GAGAA
GCAGCAGCTTCAGGAGCATAGACAAGAGCAGCAGCAGCAGTAGCCATGGCAGGAGACGGGTTCCATAGTA--GTAGGAGG
CAACACTCCTCGCGCCCTTGTAAAGTTTTTAACTGTCGGAAAGTTCTTCTGTTCTTTTTCACTATCTTCTAATTGGGCTG
ATCACTGTTGCTTCTCTGTCATATCAGTGCACGATCATTCCTGGTAGGAGCATTGGTTGGATTGGATTGGATTGGGATAT
TTCTTTTGGTTATTTTTCTGTATACATTTTTTTTAC----TATAAAGAAAAATACTGTCTACACAATGT--AGTACGTTG
TATTTCATTTTATATTTTATTTTCGAGTTGGTGAACTACGCTGTATTATAAGCCTTAATTCATATACTAGTGCCCTTAAA
ATTAAAGAAACCATGAGCACACTCATTCTGATAATCGCAACCGATGTG-AAAG-AGTTTCTATTGGATGGTTGATTTTGC
GTTTACCGAATCAGAATGGCTTGCCGAGGCATGGCCATG-GCCAGACAGCAGCTGGATTATACCAGGCTTAATACAAGTG
GACGGTTAGATTTCCACGCGGGACAGGTAATCGCATTGCCTGTTGTGTCCGCATCTGTTATCTTTGAGTTGGATTACAAG
GATTTTGTTTGAAGGAATTGTGAGGACCATGGTGCGAGGGAGGAAAGGTTGACAAGGATGCCATGGGTTGGATACCCCTC
AAGATAACAGGCAAGCAAAAAGGAAAGAAACTTCAACATCTTGAGATCTTGCACCATTCGCAGCTTATAAATTCTTGAGA
AGAGTTCCACTCGAATCTTCATGAGGTGAAAAGGACAAATAGCCACTAGTCTTATAAATGTGGATTGAGCTATACGAGCA
TATAAGTGAAGATTTGGACATTAAATCATAACTGGTTTAAAATGTAACGGCCCTAACAGAGTGGCGGCCGTTAATATGAG
CACGAAATTGAATCCGAATAGAAAGTGCTATCAGAAATTCGCAGTCGACCATAAGAACAAGGTACTCCCTCCATATAAAT
ATATCTAGCATAA
>chr3D_479
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------------------------------------------------------------------------G
GACAATAATATGTTGAACTTTCTTAAGGCATTGGTTGAATTTTTGTAAAGATATGGTGAACATTTTTTTAAATATACGAC
GAACATTGTTTTAAACACATGATGATCA-TTTTTTAAAAAC--------ATCGGTTTCTATAGATAAGTAAAATAGAAAG
TATTTTCCTAAATATTTTTTAAATTTTCAAAATATATATAAACTGATGAAGTCGAAAGGTCAGATAAAAATGGTAAGAAA
AAGAGGGCCAACGAGTC-GACGAGACCGTACCGAATATATAACGCCAACGAAAGGAAAATCAGCAGTGTAATGCAGAGGC
AGACTCTTTCTCCGGCTGGCC--------------GACGCGCCCGACCCAACCTAGCGTGACGGTTCCCAGAAATATCCC
AGACATGACCCCAACCGCGAGCACAACGTTGACGCACTATTCCCCACCAAAAACGTACAATCGTCAGCCTTGGCGTGCTG
CAGTTTGACAAGCACAAGCACGCGCGCGCGCTCTATTTCTTTACGCGCAATGGAATTCCGGGGAGAGGAGGACGGGGACG
GCAGCGACGTGGGCGACGGTGCCCCGCCCGCGGCACCTCACCGCAGCGCCACCGCAAACGGGCCGGCAGACAACATGCAA
GCGGAGGCGAGGCGGCAGTACCACGAGTGCCTCCGTAACCACGCGGCGGCCGCGGGCGGGCACGTCCTGGACGGATGCTG
CGAGTTCATGCCGGCCTCCCCCGAGGACCCACTCGCATGCGCGGCCTGCGGCTGCCACCGCAGCTTCCACCGCCGCGACC
CCTCGCCGGGGCGCGCCCACTTGCCGCTGCTGGCTGCCAGCGCGCGCGCACCATTGCTGCTCCCGCCGGCGGCCAGCAAG
CACCCGCACCAGCGTTTGCCGTTCCCCTACGGCCTTGCGGCCAGCGGCGGCACCGGCACGACGACCGAGTCCTCCAGCGA
GGAGCGGCGTGGGCCGTCGCCGGCACCGCGGAAGCGCTCCAGGACGACGTTCACGCGGGAGCAGAAGGAGCAGATGCTGG
CGTTCGCGGAGCGCGTCGGGTGGAGGCTGCAGCGGCAGGACGAGGCGATGGTGGGGCATTTCTGCGCGCAGGCCGGGGTC
CGGAGGCAGGCGCTCAAGGTCTGGATGCACAACAACAAGCAGAGTAGCAGCGGTAGGAGGCAGCAGCAGCAGGAGGAGGA
GAAGCAGCTTCAGGAGCATAGCCAAGAG---CAGCAGCAGTAGCCATGGCAGGAGACAGGTTCCATAGTA--G---GAGG
CAACGCTCCTCGCGCCCTTGTAAAGTTTTTAACTGTTGGAAAGTTCTTCTGTTCTTTTTCACTCTCTTCTAATTGGGCTG
ATCACTGTTGCTTCTCTGTCATATCAATGCATGATCATTCCTGGTAGGAGCATTGGTTGGATTGG----------GATAT
TTCTTTTGGTTATTTGTCTGTGTGCATTTTTAAACT---ATATAGAGAAAATCACTTTCTACACAATGTACAGTACGCTG
TATTTTATTTTAT--TTTATTTTGGAGTTGGTGTACTACGCTGTATTATAAGCCTTATTACTT-----------------
-----------CATCAGCACGCTCATTCTGATAATCGCAACCGAAGTG-AAAGCAGTTTCTATTGGATGGTTAATTTTGC
GTTTACCGAATCAGAATGGCTTGCCGAGGCATGGCCATG-GCCAGACAGCAACTGGATTATACCAGGCTTAATACAAGTG
GACGGCTAGATTTCCACGCGGGACAGGTAATCGCATTGCTTGTTGTGTCCGCATCTGTTATCTTTGAGTTGGATTACAAG
GATTTTGTTTGAAGGAATTGTGAGGACCATGGTGCGAGGGAGGAAAGGTTGACAAGGATGCCATGGGTTGGATACCCCTC
AAGATAACAGGCAAGCAAAAAGGAAAGAAACTTCAACATCTTGAAATCTTGCACTATTCGCAGCTTATAAATTCTTGAGA
AGAGTTCCACTCGAATCTTCATGAGGTGAAAAGGACAAATAACCACTAGTTTTATAAATATGGATTGAGCTATACGACCA
TATAAGTGAAGATTTGGACATTAAATCATAACTGGTTTAAAATGTAACGGCCCTAACAGAGTGGCGGCCATTAATATGAG
CACAAAATTCATTCCGGACAGAAAGTGCTATCAGAAATTCGCAGTCGGCCATAAGAACAAGGTACTCCCTCCATACAAAT
ATATGTGGCATAA
>SNPs
-------S---------------S----S--------------SS-------------S-S------S------------
----------------S---S------------S-------S-------------S------------------------
------S----------S---S-----SS--S------------------------------------S----S------
---S------S-S-------S--S------------S--S----S----------SS----SS----S------------
-SS---------S------S--S-S----------S--------S------S---------------S---S--------
------SS-----SSS--S-------------SS-------------------------S----S-S-S---------S-
-------------------------------------------------------------SS----S------------
-------------------------------------------------------------------------------S
---------------S-----------------------------------------S----------------------
-----S-----------S-----------------------------------------------------------S--
-----------------------------S--------------------------------------------------
--------------------------------------------------------------------------------
-----------------------------------------------------------S--------------------
--------------------------------------------------------------------------------
-----------------------------------------------------S--------------------------
------------------------------------------S-------------------------------------
----------------S---------------------------------------------------------------
--------------------------------------------------------------------------------
------S-------------------------------------------------------------------------
S------------S------------------------------------------------------------------
--------------------------------------------------------------------------------
----------------------------------------------------------------------SS--------
------------------------------------------------S-------------------------------
--------------------------------------------------------------------------------
------------------------------------SSS-----------------------------------------
--------------------------------------------------------------------S-----------
---------------------S------------------S------SS--------S----------------------
-------------S-----S-------------SSSSSSS---S------------------------------------
--------------------------------------------------------------------------------
------------------------------------------S-------------------------------------
---------------------S-----S----------------------------------------------------
---------------------------------------------------------------------------S----
--------------------------------S-----------------------------------------------
----------------------------------------S-S-------------------------------------
-------------
>forward_192
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
------------GATAGAAGGGCTCCATGGGC------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
>reverse_2200
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
---------------------------------------AGCCTGACAGCAACTGGATT---------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
--------------------------------------------------------------------------------
-------------
