>input_sequence_71396
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----------------------------------------------------------------ATGGCTTCCGCCGAGC
TTGGGTCGGACGCGTGC------GGCTTCCCCTGCGGCGGCGACGACGGCGCGATGGCGGCGCTCTCGCCGACGGTCGTC
GTGTCGGTGCTCGCGTCTCTGCTGGAGCGGCACATCGCGCGCAACGAGAGGGCCACGGCCGGGGCGACGGCCGGCCATGG
CCCCGAGGCGTCCGGCGAGGACGCGAGGAGGGCCGCGGCCTTCGACGGCGGCACGGTGCTGGACATGGGCATGCGGGAGT
TCCTGGAGCGATTCTCCCGGTACGCGCACGTGTCGCCGCAGGTGTACGTGGTGGCGTACGCCTACCTGGACCGGCTCCGC
CGCGGCGGCGACGGCGCCGGGGCGGTGCGCGTCGTGGCGACCAACGCGCAGCGGCTGCTCACTGCGGCCATCCTGGTGGC
CTCCAAGTTCGTGGAGGACAGGAACTACAAGAACTCCTACTTCGCGGCGGTGGGCGGGCTGAGCGCGGCGGAGCTGAGTT
CGCTGGAGCTGGACTTCCTCTTCCTGATGCGGTTCAGGCTCAACGTGAGCGTGAGCGTGTTCCGGAGCTACTGCCGGCAC
CTGGAGAGGGAGGTGGGCCACGGCGGCGGGTACCAGGTCGAGAGGTGCCTCGAGAAGGCCCTCCTCGTCTCCTCCGGGGA
GGCGCGGCGGCAGCACCGGCAGACGCCAGCGGCGGCAGCAGCTCAGTAA-------------------------------
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>chr2D_1_TraesCS2D01G411300
CACGACGGCTGGAGGTGAAAGAAAAAGAGGAATAGTCGTGCGGGACCCACCATATACACGCATCTCGCACGGGATGGGTG
TTTCGTGGCGCGTGAGCCAACAAAAAGTTGGGTGGGCCTGCCGGCTCCAATTTTTTTCCTTTTGAGAACCTGAATTGCCC
GAAGACCGAAAAATCGAGACACCCGAATGCCCACT---GCAAGTTACGACCTTTCCGCATGCGTAGAGCACCTTTCCGCT
GCTGTTTATCTGGCATTTAAAAAAAATTGGATTGGAGTTTGACGAATTTATACAAATATAAAAACGTGCGACCAAGTGGT
TAAGAGCTGTTAGTTAGGGCGCGCCCAACCACACTGTCTCCGGCGGTGCATTGCGACGTCTTAACCGAAGCCCCCATCGC
GCCATTAACAATGACAATCTATTCTCTCGCAAGCAAGCAAACG----AGGATCCGTCCACGCCCACGCCCACGCGTCATG
CGTGCCACCGAGACGCCCATACCAGAACAGCAGGTAGCAGCACGTACGCAGGGAGGGGTCAGCCGGTCAGGAATAGTTAA
TG-CCGTACGGCGATCCACCGGCACCGGCAGACACCGACAAGACAATTTGGCACCGGCCTCGCCGATCACGGATGCCGCT
CCAACCGCACCACCGGACAAGCCCATCGCGCCCGAATCCGCCGTTATTATACGCTTCGTAATCTCAGAGCCTCTAAACCA
AGG--------------TCGAAGAAGGTGCGTGAAGCCTTCCTCTCCGTCGTCCTTTG--CCCCCTGTTACGTGCACGTT
GTGATTATGTTAATGCCGCGTTGGCCATCGCTTTCGCCGTCCTTTCCTCCAACCTCCATTGTTTAGCCACTTCCCCACGC
CCTGCCGCCACCTCAAATGCTTAAGTATTGGCGCCCTCGAGGCCTTGGAGTGTACGTGGTGCGGGCGTGGCGGTAGGAAC
CAGCCAAGCTTTGGGTGTGTCCAAGATCCTCGTGAGCCGTGACCACCAGAGAATTCTTGGAGAAATGGCTTCCGCCGAGC
TTGGGTCGGACGCGTGC------GGCTTCCCCTGCGGCGGCGACGACGGCGCGATGGCGGCGCTCTCGCCGACGGTCGTC
GTGTCGGTGCTCGCGTCTCTGCTGGAGCGGCACATCGCGCGCAACGAGAGGGCCACGGCCGGGGCGACGGCCGGCCATGG
CCCCGAGGCGTCCGGCGAGGACGCGAGGAGGGCCGCGGCCTTCGACGGCGGCACGGTGCTGGACATGGGCATGCGGGAGT
TCCTGGAGCGATTCTCCCGGTACGCGCACGTGTCGCCGCAGGTGTACGTGGTGGCGTACGCCTACCTGGACCGGCTCCGC
CGCGGCGGCGACGGCGCCGGGGCGGTGCGCGTCGTGGCGACCAACGCGCAGCGGCTGCTCACTGCGGCCATCCTGGTGGC
CTCCAAGTTCGTGGAGGACAGGAACTACAAGAACTCCTACTTCGCGGCGGTGGGCGGGCTGAGCGCGGCGGAGCTGAGTT
CGCTGGAGCTGGACTTCCTCTTCCTGATGCGGTTCAGGCTCAACGTGAGCGTGAGCGTGTTCCGGAGCTACTGCCGGCAC
CTGGAGAGGGAGGTGGGCCACGGCGGCGGGTACCAGGTCGAGAGGTGCCTCGAGAAGGCCCTCCTCGTCTCCTCCGGGGA
GGCGCGGCGGCAGCACCGGCAGACGCCAGCGGCGGCAGCAGCTCAGTAAAAGGCCCTCGCCAACCTGGACACACTAAAGA
CTAAGGTAGCCGCAGCCATTGACGGCGGCCGCACGAGCTCGTCGCCGTGGCGTGTGCCGCGTCGTGACAAGATCGAGTGC
CCAGTGGCC------ACACGGGCTGTACCTGTACGTACATAATC---GTAGAAAGTTTGCTAACTTGCATGTGTTAGCAG
TTGTACACACAACCTCGATAGGAAAAA-GAACCAATGCGAGGATTAGTAAGAAAAAAAATCTCTTTTTTACT----TTGC
TTATTCGGGCACAATGACAAATGATTGCTTTTTAGCAGCTAAACAGAATGGACAGGGACTGGCAGATCGAGTGAGAATTG
TAACAAAATATCCTTCCC-----------------------ATT--TACGTAGAATAAAGAGAAGGGGACAGCTTTCCGT
AACTCCCGGCCCATGATCATGCCAACCGACGGCAACAAATGATTCCATACCACTTTCTTAATCTACAAATGATTA---GA
ACGTATCTGTGCCGAACGTAGCCTCCACAATCTTCTTCATTTTCTCTTCGAAAATGTGCGACTA-TGTCGTCGGTGCGAC
ATCATATCATCGGCCAATAACTTTGCCGATAATGAAAAGGTGGTAGGCACGGCACGGCACAGCA----------CA----
-TCCCCGGCACGCTGCAGCAACCCCATCAAGCCCCCACAGCGATACGGAAAAGGACTCGTATCCGTCCATTGGTGGATCA
GATCCTGACAGTGCAGCTGCACGGAGGATACCCGTGGCCCGGCCCTCGTGAGT--TGTGACCTGGCCCAT-CCATGCGCA
GTTGCGCACACAGC---ATTCCAAAAGGCTCGTGGCATCTCCAAGACGCAACTTTTTTACCGGCATCCGTCCGTGAACAG
AGAATCAGTCCACAGACACAGATGCGGCTGCCATACAACGCTAGCTGCATACATTGCAATTTTTTTTAACAAATCGGATG
AAATTCATACAAACACAGCCGGATTTCATACAAACATGATAGATTTCATATAAAACCAGACGAAAACGGTTAT
>chr2B_151
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----------------------------------------------------------------------TGAATTGCCC
GAAGACCGAAAAATCGAGACACCCGAATGCCCACTGTGGCAAGTTACGACCTTTCCGCATGCGTAGAGTACCTTCCCGCT
GCTGTTTATCTGGCATTTTTTT-AATTTGGATTGGAG-TTGACGAATTTATATAAATATAAAAACGTGCGACCAAGTGGT
TAAGAGCTGTTAGTTAGGCCGCGCCCAACCACACTGTCTCCGGCGGTACATTGCGACGTCTTAACCGAAGCCCCCATCGC
GCCATTAACAATGACAATCTATTCTCTCGCAAGCAAGCAA--G----AGGATCCGTCCACGCCCACGCCCACGCGTCATG
CGTGCCATCGAGACGCCCATGCCAGAACAGCAGGTAGCAGCACGTACGCAGGCAGAGGAGA---GGTCAGGAATAGTTAA
TGGCCGTACGGCGATCCACCGGCACCGGCAGACACCGACAAGACAATTTGGCACCGGCCTCTGCGATCACGGATGCCGCT
CCAACCGCACCACCGGACAAGGCCATCGCGCCCGAATCCGCCGTTATTATACGCTTCGTAATCTCAGACCCTCTAAACCA
AGGCCAGACAACCAAGGTCGAAGAAGGTGCGTGAAGCCTTCCTCTCCGTCGTCCTTTG-CCCCCCTGTTACGTGCACGCT
GTGATTATGTTAATGCCGCGAC-GCCATCGCTTTCGCCGTCCTTTCCTCCAACCTCCATTGTTTAGCCACTGGCCCACGC
CCTGCCGCCCCCTCAAATGCTTAAGTACCGGCGCCCTCGAGGCCTTGGAGTGTACGTGGTGCGGGCGTGGCGGTAGGAAC
CAGCCAACCTTTGCGTGTGTCCAAGATCCTCGTGAACCGTGACCACCAGAGAATTCTTGGAGAAATGGCTTCCGCCGAGC
TAGGGTCGGACGCGTGC------GGCTTTCCCTGCGGCGGCGACGACGGCGCGATGGCGGCGCTCTCGCCGACGGTCGTC
GTGTCGGTGCTCGCGTCTCTGCTGGAGCGGCACATCGCCCGCAACGAGAGAGCCTTGGCCGGGACGACGGCCGGTCGTGG
CCATGCGGCGTCCGGCGAGGACGCGAGGAGGGCCGCGGCCTTTGACGGCGGCACGGTGCTGGACATGGGCGTGCGGGAGT
TCCTGGAGCGGTTCTCCCGGTACGCGCAAGTGTCGCCGCAGGTGTACGTGGTGGCGTACGCCTACCTGGACCGGCTCCGC
CGCGGCGGCGACGGCGCCGGGGCGGTGCGCGTCGTGGCGACCAACGCGCAGCGGCTGCTCACCGCGGCCATCCTGGTGGC
CTCCAAGTTCGTGGAGGACAGGAACTACAAGAACTCCTACTTCGCGGCGGTGGGCGGTCTCAGCGCGGCGGAGCTGAGCT
CGCTGGAGCTGGACTTCCTCTTCCTGATGCGGTTCAGGCTCAACGTCAGCGTGAGCGTGTTCCGGAGCTACTGCCGGCAC
CTCGAGAGGGAGGTGGGCCACGGCGGCGGGTACCAGGTCGAGAGGTGCCTAGAGAAGGCCCTCCTCGTCTCCTCCGGGGA
GGCGCGGAGGCAGCACCGGCAGGCGCCAGCGGCGGCAGCAGCTCAGTAAAAGGCCGTCGCCAACCTGGACGCACTAAAGA
CTAAGGTAGCCGCAGCCATTGACGGCAGCCGCACGAGCTCATCGCCGTGGCGTGTGCCGCGTCATGACAAGATCGAGTGC
CAAGTGCCC------ACACGGGCTGTACCTGTACGTACATAATC---GTAGAAAGTTTGCTAACTTGCATGTGTTAGCAG
TTGTACACACAACCTCGGTTGGAAAAT-AAACCGATGCGAGGATTAGTAAGAAAAAATCTCTCTG-TTTACT----CTGC
TTATGCGGGCACAATGACAAACGATTGCTTTTTAGCAGCTAAACAGAATTGACAGAGACTGGCAGATCGAGTGAGAATTG
TAACAAAATATCTTTCCC-----------------------ATTTATACGTAGAATAAAGAGAAGGGGACACCTTTCCGC
AACTCCCGGCCCATGATCATGCCAACCGACGGCAACAAATGATTCCATACCACTTTGTTAATCTACAAATGATTACTAGA
ACGTATCAATGCCGAACGTAGCCTCCACAATCTTCTTCATTTTCTCTTCGAAAATGTGCGATT-GTGTCGTCGGTGCGAC
ATCATATCATCGGCCAATAACTTTGCTGATAATGAAAAGGTGGTAGGCACGGCACGGCACGGCACAGCACAGGACAGCAC
ATCCCCGGCACGCTCGAGCAACCCCATCAAGCCCCCACTGGGATACGGAAAACGACTCGTATCCGTTCATTGGTGGATCA
GATCCTGATAGTGCAGCTGCACGGAGGATACCCCTGGCCCGGGCCTCGTGAGTCGTGTGACCTGGTCCAT-CCATGCGCA
TTTGCGCACACAGCGTTGCAAAAGG-------------------------------------------------------
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>chr2A_227
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---------------------------------------------------------------------ACCTTTCCGCT
GCTGTTTATCTGGCATTTTTTA-GATTTGAATTGGAGTTTGACGAATTTATACAAATATAAAAACGTGCGACCAAGTGGT
TAAGAGCTGTTAGTTAGGGCGCGCCCAACCACATTGTCTCCGGCGGTGCATTGCGACGTCTTAACCGAAGCCCCCATCGC
ACCATTAACAATGACAATCTATTCTCTCGCAAGCAAGCAA--GCAAGAGGATCCGTCCACGCCCACGCCCACGCGTCACG
CGTGCCATCCAGACGCCCATACCAGAACAGCAGGTAGCAGCACGTACGCGGGGAGGGGTCAGCCGGTCAGGAATAGTTAA
TGGCCGTACGGCGATCCACCGGCACCGGCAGACACCGACAAGACAATTTGGCACCGGCCTCTGCGATCACGGATGCCGCC
CCAACCGCACCGCCGGACAAGCCCATCGCGCCCGAATCCGCCGTTATTATACGCTTCGTAATCTCAGACCCTCTAAACCA
AGGA--------------CGAAGAAGGTGCGTGAAGCCTTCCTCTCCGTCGTCCTTTGCCCCCCCTGTTACGTGCACGCT
GCGATTATGTTAATGCCGCGCTGGCCATCGCTTTCGCCGTCCTTTCCTCCAACCTCCATTGTTTAGCCGCTGGCCCACGC
CCCGCCGCCCCCTCAAATGCTTAAGTATCGGCGCCCTCGAGGCCTCGGAGTGTACGTGGTGCGGGCGTGGCGGTAGGAAC
CAGCCAAGCTTTGCGTGCGTCCAAGATCCTCGTGAGCCGTGACCGCCAGAGAATTCTTCCAGAAATGGCTTCCGCCGAGC
TAGGGTCGGAGTCGGACGGGTATGGCTTCCCCTGCGGCGGCGACGACGGCGCGACGGCGGCGCTCTCGCCGGCGGTGGTC
GTGTCGGTGCTCGCGTCTCTGCTGGAGCGGCACATCGCGCGCAACGAGAGGGCCTTGGCCGG---------CGCCCATGG
CCATGCGGCGTCCGGCGAGGACGCGAGGAGGGCCGCGGCCTTCGACGGCGGCACGGTGCTGGACATGGGCATGCGGGAGT
TCCTGGAGCGGTTCTCCCGGTACGCGCACGTGTCGCCGCAGGTGTACGTGGTGGCGTACGCCTACCTGGACCGGCTCCGC
CGCGGCGGCGACGGCGCCGGGGCGGTGCGCGTCGTGGCGACCAACGCGCAGCGCCTGCTCACCGCGGCCATCCTGGTGGC
CTCCAAGTTCGTGGAGGACAGGAACTACAAGAACTCCTACTTCGCGGCGGTGGGCGGGCTGGGCGCGGCGGAGCTGAGCT
CGCTGGAGCTGGACTTCCTCTTCCTGATGCGGTTCCGGCTCAACGTCAGCGTGAGCGTGTTCCGGAGCTACTGCCGGCAC
CTGGAGAGGGAGGCGGGCCACGGCGGCGGGTACCAGGTCGAGAGGTGCCTTGAGAAGGCCCTCCTCGTCTCCTCCGGGGA
GGCGCGGCGGCAGCACCGGCAGCCGCCAGCGGCGGCGGCAGCTCAGTAAAAGGTCCTCGCCAACCTCGACGCACTAAAGA
CTAAGGTAGCCGATGCCATTGACGGCGGCCGCACGAGCTCGTCGCCGTGGCGTGTGCCGTGTCGTGACAAGATCGAGCGC
CCAGTGCCGACACGGACACGGGCTGTACCTGTACGTACATAATGGTAGTAGAAAGTTTGCTAACTTGCATGTATTAGCAG
TTGTACACACAACCTCGATTGGAAAAAAGAACCGATGCGAGGATTAGTAAGAGAAAATCTCTCTT-TTTACTCTGCTTAC
TTATGCGGGCACAATGACAAACGATTGCTTTTTAGCAGCTAAACAGAATCGACAGGGGCTGGCAGATCGAGTGAGAATTG
TAACAAAATATCTTTCCCGTCAAAAAATATATATCTTTCCCATT--TACGTAGAATAAAGAGAAGGGGACACCTTTGCGT
AACTCCCGGCCCGTGATCATGCCAACCGACGGCAACAAATGATTCCATACCACTTTCTAAATCCACAAATGATTA---GA
ACGTATCAGTGCTGAACGTAGCCTCCACAATCTTCTTCATTTTCTCTTCGAAAATGTGCGATTTGTGTCGTCGGTGCGAC
ATCATGTCATCGGCCAATAACTTTGCTGATAATGAAAAGGTGGTAGGCACGGCACGGCACAGCA----------CAGCAC
ATCCCCGGCACGCTGGAGCAACCCCATCAAGCCCCCACAGCGATACGGAAAAGGACTCGTATCCGTCCATTGGTGGATCA
GATCCTGACAGTGCAGGTGCACGGAGGATACCCCTGGGCCGGCC-----------TGTAACCTGGTCCATCCCATGCGCA
CTTGCGCACACAGCAGCATTCCAAAAGGCTC-------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS----------
--------------------------------------------------------------------S-----------
------------------SSS-S--S------------------------------------------------------
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----------------------------------------SS--------------------------------------
-------S------------------------------------------------------------------------
-------------------------------------------------------------SS-----------------
--------------------------------------------------------------------S-----------
------------------------------------------------------------------------------S-
--------------------S--------------------------------------------------SS-------
---------S------------------S---------------------------------------------------
-------------S------------------------------------------------------------------
-S------------------------------------------------------------------------------
------------------------------------------------------SS-------S----------------
--SS-S--------------------------------------------------------------------------
----------S---------------------------------------------------------------------
--------------------------------------------------------------S-----------------
------------------------------------------------------------------------------S-
----------------------------------------------S---------------------------------
--------------------------------------------------S-----------------------------
----------------------S-----------------------------------------------S---------
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------S-------------------------------------------------------------------------
-------------------S-------------S-----------------------SS------S--------------
----S----------------S---------------------------S------------------------------
------------S----------------------------------------------------------S--------
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-------S-----------------------------------------------------S-S----------------
--------------------------S-----------------------------------------------------
---------------S----------------------------------------------------------------
---------------------------------S-------------------------------S--------------
S------------------------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_60
----------------------------------------CGGGACCCACCATATACACG--------------------
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>reverse_2050
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-------------------------------------------------GGACAGGGACTGGCAGATC------------
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