>input_sequence_71380
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-------------------------------------------------------------------------ATCACAA
GACGAACCCAGACGGTCAAGAGATCAAGGAAGATACCATGGAGTGCGGCCGTAGGCAATGGCAAGCGCAGCTGGCGGGGC
TCGCGCTCGCGTTCCTCCTCTTTGCGCCTGAGTTGGTGCAGTGCGCGGGCGCCGAGGCCGACGGCGAGAAGGACGGGCTG
GCGTCGCCGGGGAAGACTGTGCCGCCGGTTCCGCCTGGGTGGACCGGCGACTCGGGGTCCGCCCAGGGGTCCAGCCCTGA
CGGCTCCACCTGGAAGTACGAGTGGGGATGGGCTGCCGGGCCTGTTGGAAAGGGCTCCGGTTTCGGATACGGT------T
ACGGTTACGGTGGCAGCGGTGATGCAGGCGGCGGGGGCGAAGGTGGTGGCAG------------TGGCGGAGGAAGCGGA
AGAACGTTTGGTCCACGCGATCGCGGATACGGTGGATATCCCGGTGGCTATGGTGGCAACGGTGCTGGTGGTTATAATGG
GGAAGGAGCGTTTGGCGGCGAAGATGGTGGCGCTGGCTGGAACAAGCGCGGTGGATTCCGCGGTGGAGGGACGCAGAAGA
AGCAGGACGGTGGCGGTAAAAACTGAAGCCGCCTGTGTCGTTACTCTCTT----AGCCATGCAGAGATGCGATCAGTATA
CGTCATGGCAGAAATCATAATGCTAATATAGCTAAAGCAGTCTATATACTTCTATAATTAAACGATGGTGTACTT-----
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>chr6D_1_TraesCS6D01G223700
CTGGGATGCCGGCGGTGGTGTCGTTTGGGGCGGTGGCCATGGCAGGAGCAGGAGGGCGGGAGGATTTTTTGGAGAGCAGG
GGGAATTAAAATTTTGTGCCCCCGACGTGCGTGCCAGTGGGTGTTCAAGGACATGCGTCCCGCGCGCCACGCCCTATTCG
TTTCGACGCAAATGCAGCCCAAATATGGGCTGGAAATGGGTCACGGATGGAGAAAAAATGGACGCCTGTCCATTTGCGTC
GGCGTGTTGGGCCGCGTTTTTGAGTGAGGAATAGAGCATGGAATGGAATATCTCTGGAATTTCGCTACCGGACGGTACAC
AAAGGGCTGATGTCCTTGTTAAACCACAAGGTCAAAGTTATCGGTTAAGCTTACCACTAACTTTGATGCCGGTTATCGTG
GCCTTGCAGCGTGCAAAAGCAGAGATATCCTGGCCACTTGATTACGACTTCCATACACGCCAACACTGCCATCTAATGGC
GGTCGACAGCCTGAATTAGTGCAGGATTGAAATGGACTGCACCCGTGTTCAACTCCATATCGTTTTCTCCCTTCCCTTTT
ACCGGCACGCTTTGTGCTCACGGGCGCGCGATGTGCCCAGATATTTCCGTGTCATGGGCTCATGGCAGTCTTGCTGTGCT
GCATGCACCGACGATCTTTGTA--AGTGGGAACGGACGGACATGGTCAAGCCGTGGCATCAGAATTTTGCCCAGCTCCGG
CAGCTACCAGATTCTTCAGTCACGGGACTCTCGGCATAGGAACAAAATTAACCAATAACAGCTTGCTTTTCCTTTTCTTG
CAATTCCAGTGGGCCGCGAGCACATGACGCCCGGCGATATAAACTGCTTTTCTGAGAGATTTTAGTAAGTCGGCACAA--
-----------------------------AAATCCGCAGCGAAGAGGCTAAATCCTCCCAGGAATGGGACGGTAGTGCGT
GATCGATTGCTCCGGACCACTAGCCCCATGATCGAGCGCTATAAATAGGGCACAGGGCATCCACTGCAAGCACATCACAA
GACGAACCCAGACGGTCAAGAGATCAAGGAAGATACCATGGAGTGCGGCCGTAGGCAATGGCAAGCGCAGCTGGCGGGGC
TCGCGCTCGCGTTCCTCCTCTTTGCGCCTGAGTTGGTGCAGTGCGCGGGCGCCGAGGCCGACGGCGAGAAGGACGGGCTG
GCGTCGCCGGGGAAGACTGTGCCGCCGGTTCCGCCTGGGTGGACCGGCGACTCGGGGTCCGCCCAGGGGTCCAGCCCTGA
CGGCTCCACCTGGAAGTACGAGTGGGGATGGGCTGCCGGGCCTGTTGGAAAGGGCTCCGGTTTCGGATACGGT------T
ACGGTTACGGTGGCAGCGGTGATGCAGGCGGCGGGGGCGAAGGTGGTGGCAG------------TGGCGGAGGAAGCGGA
AGAACGTTTGGTCCACGCGATCGCGGATACGGTGGATATCCCGGTGGCTATGGTGGCAACGGTGCTGGTGGTTATAATGG
GGAAGGAGCGTTTGGCGGCGAAGATGGTGGCGCTGGCTGGAACAAGCGCGGTGGATTCCGCGGTGGAGGGACGCAGAAGA
AGCAGGACGGTGGCGGTAAAAACTGAAGCCGCCTGTGTCGTTACTCTCTT----AGCCATGCAGAGATGCGATCAGTATA
CGTCATGGCAGAAATCATAATGCTAATATAGCTAAAGCAGTCTATATACTTCTATAATTAAACGATGGTGTACTTGTACG
GTTGTA----------------------CCTAT-GAATGGTGTATATGATTGTTGCATGTTCTCTCAGTCTCGACTCGAT
CCGTATCAGGGGTCGATGTGCTGATGCATGTATGTATCACTTCGCTTCGTATTTTTCTTTGCCTGATGCCAATCGTCCAA
TATAATCGACGACTCGACGAGGTTAAGTAAAGGTGTTCAGAGCATTTACATGCGGGCGTTGTTTGTGTTCAGAGCATTTA
CATGCGGGCGCCTCAAACAACCTTAAATCATCTGGACGGACGGACCGATCATCGTTCAGTCAAAAAAACCGATCTATCCG
AGCGCCTTAAACCGGTCTCAAACGCTCGGGCTATCCGGCACCTCTCATATCCTGCCCAAATGTAGGCGAATATGAGGTGA
CCCGGTTGCGACCAGGCGTGTTCGCCATGTTAGCACGACCCACAACCGTCCCCACAAAATATCCTAATCCAGAAATCCTA
GTTCACTTCGTCCCGCTCAAGCTCCGTCTCTTCTCCTTCCCTTCTTTGGTTTTTCCTATTTTGATTCAATCCGATGACTT
CGGTGAGCATGTTGAGCTCCGGCAGCCGCTCCAACGACGACGCCATCGATGTCGATGAGGAGCTGGCCCTCCGCATTGCG
CTAAAGCGGTCGGGTGGACACGAGGGGAGGGGCAATTCCGGATCTGCTTCGTCGCCGCTTGACTAAGCGCAGACGCCACA
GCTGGCCCCTCCCAGCCGCGCGCGGCTCCTCAAGGGTTGATCAATCCGCGCCGCCCCTTTGTCGCCCACCTCCCCCGCCG
GCCGCTGCTCCGCAAGGGCAGCGGTAGGTTCTAGTGCCCATTCCGCCGGCCCCGCAGAGGCGCACGCCGGAATCGGAGGC
GCGTGCCGCCTGCCGCGAGGGGCAGCGGATAAGGGAGAGGGAGGCGGCAAAGCAATCCGTTTGACGCCATCGTGGGTTGC
CAACAGTGCCCAACGAGGAGGAGCGGCTCCTCGCTTTGTTTTGGACTCTAATTTGCAT
>chr6A_262
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---------------------GAGAGTGGAAGAGAGCATGGAATGGAATATCTCTTGGATTTCGCTACGGGACGATATAC
AAAGGGCTGATGTCCTTGTTAA-CCACAAGGTCAAAGTTATCGGC-------ACCACTAACTTTGATGCCGGTTATCGTG
GCCTTGCAGCGTGCAAAAGCAGAGATATCCTGGCCACTTGATTACGACCTTCATACACGCCAACACTGCCATCTAATTGG
GGTCGACAGCCTGAATTAGTGCAGGATTGAAATGGACTGCACCCGTGTTCAATTCCATATCGTTTTCTCCCTTTCCTTTT
ACCGGCACTCTGTATGCTCACGGGCGCGCGATGTGCCCAGATATTTCCGTGCCATGGCAATCT-------------TGCT
A-----ACCGACGATCTTTGTA--GGTGGGAACGGATGGACATGGTCAAGCCGTGGCATCAGAATTT-GCCCAGCTCCGG
CAGCTACCAGATTCTTCAGTCACGGGACTCTCGGCATAGGAACAAGATTAACCAATAACAGCTCGCATTTCCTTTTCGTG
CAAT-CCAGTGCGGCGCGAGCACATGACGCCCGGCGATATAAGCTGCTTTTCTCAGAGACTTTAGTAAGTCGGCACAA--
-----------------------------AAATCCGCAGCGAAGAGGGTAAATCCTCCCAGGAATGGGACGGTAGTGCGT
GATCGATTGCTCCGGACCACCAGCCCAATGATCAAGCGCTATAAATAGGGCACGGGGCATCCACTGCAAGCACAACACAG
GACGAACCAGTGG-----AGAGCTCAAGGAAGATACCATGGAGTGCGGCCGTAAGCAATGGCAAGCGCAGCTGGCGGGGC
TCGCGCTCGCGTTCCTCCTCTTTGCGCCTGCGTTCGTGCAGTGCGCGGGCGCCGAGGCCGACGGCGAGAAGGACGGGCTG
GCGTCGCCGGGGAAGACTGTGCCGCCGGTTCCGCCTGGGTGGACCGGCGACTCGGGGTCCGCCCAGGGGTCCAACCCTGA
CGGTTCCACCTGGAAGTACGAGTGGGGATGGTCTGCTGGGCCTGGTGGAAAGGGCTCC------------GGT------T
ACGGTTACGGTGGCAGCGGTGATGCAGGCGGCGGGGCCGAAGGTGGTGGCAGTGGGAGAGGCGGTGGCGGAGGAAGCGGA
AGAACGTTTGGTCCACGCGATCGGGGATACGGAGGACATCCCGGTGGCTATGGTGGCAACGGTGCTGGTGGTTATAATGG
GGAAGGCGCGTTTGGCGGCGAAGATGGTGGCGCTGGCTGGAACAAGCGCGGTGGATTCCGCGGTGGAGGGACGGAGAAGA
AGCAGGACGGTGGCGGTAAAAACTGAAGCCGCCTGCGTCGTTATTACACTCTTAAGCCATGCAGAGATGCGATCAGTATA
CGTCATGGCAGAAATCATAATGCTAATATAGCTAAAGCAGTCTATATATCTA------TAGACGATGGTGTACTTGTACG
GTTGTATGGTGTACTTGTACGGTTGAACCCTAT-GAATGGTGTATATGATTGTTGCATGTTCTCTCAGTCTCGACCCGAT
CCGTATCAGGGGTCGATGTGCTGATGCATGTATATATCACTTCGCTTCGTTTTTTTCTCTGCCTGATGCCAATCGCACAA
TATAATCGACGACTCGACGAGGTTAAGTAAAGGTGCTTAGAGC-------------------------------------
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>chr6B_275
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----------------------------------AGCATGGGATGGAATATCTCTGGGATTTCCCTACCGGACGGTATAC
AAAGGGCAGATGTCCTTGTTAAACCACAAGGTCGAAGTTATCGGCTAAGCTTGCCACTAACTTCGATGCCGGTTACCGTG
GCCTTGCAGCGTGCAAAAGCAGAGATATCCTGGCCACTTGATTACGACCTTCACACACGCCAACACTGCCATCTAATGGC
GGTCAACAGCCTGAATTAGTGCAGGATTGAAATGGACTGCACCCGTGTTCAATTCCATATCGTTTTCTCCCTTTCCTTTT
ACCGGCACGCTTTGTGCTCACGGGCGCGCGATGTACCCAGATATTTCCGTGCCATGGCAATCT-------------TGCT
ACATGCACCGTCGATCTTTGTAAGAGTGGGAACGGACGGACATGGTCAAGCCGTGGCATCAGAATTTTGCCCAGCCCTGG
CAGCTACCAGATTCTTCAGTCACGGGACTCTCGGCATAGGAACAAGATTAACCAATAACAGCTCGCATTTCCTTTTCGTG
CAATTCCAGTGCGCCGCGAGCACATGACGCTTGACTAGATAAGCTGCTTTTGCGAGAGACTTTAGTAAGTCGGCACAGGA
AAAATCGCGACGTCGCAAGGCAAACGACCAAAGCCGCAGCGAAGAGGGTAAATCCTCCCAGGAAGTGGACGGTAGTGCGT
GATCGATTGCTCCGGACCACCAGCCCCATGATCGAGCGCTATAAATAGGGCGCGGGGCATCCACTGCAAGCACATTACAG
GACGAACCCAGAAGGTCAAGAGCTCAAGGACGATACCATGGAGAGCGGCGGTAAGCAATGGCAAGCGCAGCTGGCGGGGC
TCGCGCTCGCGTTCCTCCTCTTTGCGCCTGCGTTGGTGCAGTGCGCGGGCGCCGAGGCCGACGGCGAGAAGGACGGGCTG
CCGTCGCCGGGGAAGACTGTGCCGCCGGTTCCGCCTGGGTGGACCGGCGACTCGGGGTCCGCCCAGGGGTCCATCCCTGA
CGGTTCCACCTGGAAGTACGAGTGGGGATGGGCTGCCGGGCCTGTTGGAAAGGGCTCC------------GGTTTCGGAT
ACGGTTACGGTGGCAGCGGTGATGCAGGCGGCGGGGGCCAAGGTGGTGGCAGTGGCGT------------AGGAAGCGGA
AGAACGTTTGGTCCACGCGATCGCGGATACGGTGGATATCCCGGTGGCTATGGTGGCAACGGTGCTGGTGGTTATAATGG
GGAAGGAGCGTTTGGCGGCGAAGATGGTGGCGCTGGCTGGAACAAGCGCGGTGGATTCCGCGGTGGAGGG----------
----------TGGCGTTAAAAACTGAAGCCGCCTGTGTCGTTACTCTCTT----AGCCATGCAGAGATGCGATCAGTATA
CGTCATGGCAGAAATCATAATGCTAATAAAGCTAAAGCAGTCTATATACTTCTATAATTAAACGATGGTGTACTTGTACG
GTTGTA----------------------CCCTACGAATGTTGTATATCATTGTTGCATGTTCTCTCAGTCTCGACTCGAT
CCGTATCACGGGTCGATCTGCTGATGCATGTATGTATCACTTCGCTTCGTATTTTTCTCTGCCTGATGCCAATCACCCAA
TATAATTGACGACTCGACGAGGTTAAGTAAAG------------------------------------------------
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>SNPs
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSS---S-S----S-------------------------S-------------------S--
--------------------------------------------S-----------------------------------
------------------------------------------------S-S-----------------------------
----------------------------------------------------S--------------------S------
---------------------------------------------------S-----SSSSS-SSSSSSSSSSSSS----
S-------------------------------------------------------------------------------
---------------------------------------------S-----------------S--S----------S--
-----------S------------------------------S----------------S--------------------
-----------------------------------------------S--------------------------------
--------------------S--------------------------------S-------------------------S
------------S---------S------------------------------S--------------------------
------------------------------S-------------------------------------------------
-------------------------------------------------------------------------S------
---S------------------------------------------------------SSSSSSSSSSSS----------
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-------------------------------------------------------------------------S------
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----------------------------------------------------------S----------------S----
-----------------------------------S-S-----SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
>forward_107
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-------AAAATTTTGTGCCCCCGACG-----------------------------------------------------
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>reverse_1958
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-------------------------------------CAGAGCATTTACATGCGGGC-----------------------
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