>input_sequence_71376
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--------------------------------------------------------GTATAAATACGTTACGTCGTCGTC
TAGTAGTAGCACACAACGCGAAGAGCTCCATCTCAGTCCATCGATCCGACAATGAAGAGGCTGAGGTTTGGCGAGGAGGC
GGAGGTGGACGGCGCCGCCATAGCCCATGAGGTGATGATGCTGCTCGCCGCGCGGAGCGCCGCGATGGGGGGCGGCGAGC
------CGGTGGCGGTGGCGCGGCCGCGCGCGTTCGAGTGCAAGACGTGCAACCGCCAGTTCCCGTCGTTCCAGGCGCTC
GGCGGCCACCGCGCCAGCCACAAGCGGCCGCGGGGCGACCCGATCAGCGAGCAGGCGCCGGCGCCGGCGCCGGTGCCCGC
GAGGAGGCACGGGTGCACGGTGTGCGGCGTGGAGTTCGCGCTCGGGCAGGCGCTGGGCGGGCACATGAGGCGCCACCGCG
CCCACGAGCAGGAGGGGAGCACTCAC---GGGCCGGTAGTCGCCGAGCGGGAGCCCGGCGAGACAAGAAGGGGGCTGCTG
CTGGGCTTGGACCTGAACGCTACTCCCGCTGAGCAGGCCATGGACCTCTCTCTCTGGGCCTGACCGAACCGAGGACCGGT
GGGCTGCTGTTCCTTCTGCAATAGCTCCCCTCCTACTACTCTTCTCTAACCTAGGGGGGTGTGGAGTTTCTTTCTTGTAC
AATATTGGTTGCTGTCAATTGATTGATTTGGATTTTTCCACCCCA-----------------------------------
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>chr5B_1_TraesCS5B01G489400
GGACAGAAGAA---TACAAAGGACGGCAGATAAGACAAATAAGAATCACTGGCTGCTCATTTTTATTGCTTGCAACTTAT
AAAGTC-TTCAACTTCTTTTGCTATGACTATGATAGTATGAGGTGAGCTCAGGAGAACTAATAATGCAATTGTAAAAGAA
GATAAACATCCACAGGGCAAGAAAAAAGTTCAGACGACAA---A-AAATATCCCAAGGACGGCG----------------
----------CTCGTTTCAATTGCTTAATTTGAACACTATTGACTAGAGCAAAACTATGAAATTGGGTAACCAGCTGCAT
ACATACATAATTAGGCATATATAGAATACCGCCTTCCTCTAAAACTCTGGACGAAAGGGAGCACCGGAGCAG--------
----------------------CAGCTATGAAGGATGGGTTTATCAATCTAAAGTCCAATCTAGTGAAGGATGGGATTGA
TAAATCTAATGAACTCAGCCTACTTATTTGTTGCTATGAGTATGATGT-AGTGCAATCAATATAAGAACTTCATTTGAGG
GGAGGTAGTAACTAGCTAGTGCAGTACAAAGAAGGCAAATATATATACTTCTCTAGAAAAGGCAATTATACTAAACACC-
-AGTCGCTCTCACTGCGCGCATGGGTGCTGC--AGTCAGTCAGATTTCACTCGGAGCTGCAAACTTATCT--AGTAGTAT
CATCTATCATCCCAAATTATTAGGAGTGCTTGATCTAAAATGTATCC-AAGTCAACTCCTCACAACTG-CTCTATCGATC
TCAACCAACGAGCAGTAGCT--------TGTCAACTCCTACGAAGTCGCACCACGCGTTAATCTGTCATCACAGAGCACC
CAAAGTCCAAGCGAACAGATAATGATTGAGAGACTTTCACAAAAGATGCATAGACAATGCTACAAGTAGCATAA-TTTTT
TGAAAGGTCCACAAGTACTATAGTAGCTAGTATAACACT-----------------------------------------
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----------------------------------------------TGTATGATTAATTAGTAGTCGTATCATTCTCCGA
GCTAACGAACTAGCTCGTACTACTACATAA-------TGGATGCGGCCAGCCTATAGTATAAATACGTTACGTCGTCGTC
TAGTAGTAGCACACAACGCGAAGAGCTCCATCTCAGTCCATCGATCCGACAATGAAGAGGCTGAGGTTTGGCGAGGAGGC
GGAGGTGGACGGCGCCGCCATAGCCCATGAGGTGATGATGCTGCTCGCCGCGCGGAGCGCCGCGATGGGGGGCGGCGAGC
------CGGTGGCGGTGGCGCGGCCGCGCGCGTTCGAGTGCAAGACGTGCAACCGCCAGTTCCCGTCGTTCCAGGCGCTC
GGCGGCCACCGCGCCAGCCACAAGCGGCCGCGGGGCGACCCGATCAGCGAGCAGGCGCCGGCGCCGGCGCCGGTGCCCGC
GAGGAGGCACGGGTGCACGGTGTGCGGCGTGGAGTTCGCGCTCGGGCAGGCGCTGGGCGGGCACATGAGGCGCCACCGCG
CCCACGAGCAGGAGGGGAGCACTCAC---GGGCCGGTAGTCGCCGAGCGGGAGCCCGGCGAGACAAGAAGGGGGCTGCTG
CTGGGCTTGGACCTGAACGCTACTCCCGCTGAGCAGGCCATGGACCTCTCTCTCTGGGCCTGACCGAACCGAGGACCGGT
GGGCTGCTGTTCCTTCTGCAATAGCTCCCCTCCTACTACTCTTCTCTAACCTAGGGGGGTGTGGAGTTTCTTTCTTGTAC
AATATTGGTTGCTGTCAATTGATTGATTTGGATTTTTCCACCCCAAAAAAGGATGGGCTGTTTATATCCATCAAACTTTC
TGATCCGTTCCTAAATATTTGTCTTTCTAGAGATTTCAACAAATGACTACATACAGAACAAAATGAGTGAATCTACATTC
TAAAACATGTATATATACATCCGTATGTAGTAGATCATTTGAAATCTCTAAAAACACAAATATTAGGAACCGAGGGAGTA
GATCCGAACGACCCTCCATGCGGAAGATTTTCTTAGCAGTTGCATGCATGCGTTAGTTCTTTGAAAAAAGCTGCATGCCA
GACACATTCAACGCATTCCCTCTCATTCCCTCTCCTAGTTGTTCCATCCGTGCATATAAGACGAAAATGCTGATGTTACT
GAGATTCCACCAAATTCAAAGATTCAAAATGTTTTATAGTTCTAATCTATAGCTCTAACCGTCGCTCTGATTGAAAATTG
TTTTCACATAAAAGATTCGTCGTGACGAAATCTTAAAAACTAGATTCCATGTTGGTATGTTTCGATGACATTTTTTTTCA
GGCAAAAAGTTACCACGTCTAGGCTAACTAAGTTATCACATCTGCACTGTGTATATTATCATGTTGTTTGCATAGAAGTT
ACCAGGACATAAAAATGATTCCTCCAACCTTCTTTTCATATGCAAATGCATGCACTAGTGTACAGAATGGGAGCACCTGA
TTATTTATGGTCTCATTCATGTGACATCATCACATACGTCGGCTAGACTTTTTCTTCTGCTCACGATTTGCATGTATCGT
GTTTCTTTTTGGGTTTGGCCTTTTGTTTCTCCTGTCGCTCGTACCAGAGCAAATGTACGAGTCCATACGACAAGCATGTA
TGTACGTCTTTTTTTTTGTTTTTGAACTTTTTTTAGGATAAATGCCGCCGCTTTATTGAATTAAAAGAAGTTCGGAATCT
CGTCGGCGGTCACATCTAGAATGCAATGTATGTATGTCTTAGGCCCAGTTCTTTTACCAGATTCTCCCAAAATCCGATCC
CTACC
>chr5A_1
GGACAGAACAATACTACAAAGGACGGCAGATAAGACAAATAAGAATCACTGACTGCTCATTTTTATTGCTTGGAACTTAT
AAAGTC-T--AATTTCCTTTGCTATGACTATGATAGTATGAGGTGAGCTCAGTAGAACTAATAATGTGATTATAAAAGAA
GAAAAACATCCACAGGGCAAGAATAA-GTTCAGACGAGGACACAAAAATATCCGAAGGACGGCGGGCAGGACGAATAACA
CCGCATCGTGCTCGTTTCAATTGCTTAATTGGAACACCGTTGACTAGAGCAAAACTATGAAAATGGCTAACCAGATGCAT
ACATAATTAAGCATAGGATACCG-------GCCTTCCTCTAAAAATCTTGGTAAAAGGGAGCAGCAACACCAACTAACTA
GGTGTACATAACAAGTGTCAGTCAGCTATGAAGGATGGCTTTATCAATCTAAAGTCCAATCTAGTGAAGGATGGGAGTGA
T-AATCTAATGAACTCCGCCTACTTATTTATTGCTTGAGTAGATGTTGCAGTGCAACCAATATAAGAACTTCATTTGAGG
CGAGGTAT----TAACTAGTGCAATACAAAGAAGGAGTACTTC------TCTCAAAAAAAAGCAATTATACTAAACACTT
--GTTGCTCTCACTGCGCGCATGGGTGCTGCGCAGTCAGTCAGATTTCACCCGGAGCTGCAAACTCATCTCTAGTAGTAT
CATCTATCATCCCAAATTATTAGGAGTACTTGATCT-AAATGTATCC-AAGTCAACTCCTCACAACTG-CTCTATCGATC
TCAACCAACGAGCAGTGGCT--------TGTCAACTCCTAAGAAGTCGCACCACGCCTTAATCTGTCATCACAGAGCGCC
CAAAGTCCAAACGAACAGATAATGATTGAGAGACTTTCGCAAAAGAAGCATAGACAATGCTACAAGTAGCATAA-TTTTT
TGAAAGGTCCACTAGTACTATAACCAATGAAAACAATAGCATGCTACAACAAAATAGCGCGGACCTTAAAATATGCTATT
AGCATGTTATATCGCGCTATAGCGTGATATTAGCGAGACGTTATACAATAATATATTTAGCAAGGTCATTCTCAATATGC
TATTAGCGACGCTATAGCGCGCTATTCTTTTCAATGACTATAACACTGTATGATTAATTAGTAGTC-TATCATTCTCCAA
GCTAACTACCC--------------------CATGAGTGAATGAGGCCGACCTATAAATACGT-------CGTCGTCGTC
TAGTAGAACAACGAAACGCGAAGAGCTCCACCGATCA---------CGACAATGAAGAGGCTGAGGTTTGGCGAGGAGCC
GGAGGTGGATGGTGCCGCCATAGCCCATGAGGTGATGCTGCTGCTCGCCGCGCGGAGCGCCGCGATGGGGGGCGGCGAGC
------CGGTG------GCGCGGCCGCGCGCGTTCGAGTGCAAGACGTGCAACCGCCAGTTCCCGTCGTTCCAGGCGCTC
GGCGGCCACCGCGCCAGCCACAAGCGGCCGCGGGGCGATCCGATCAGCGAGCAGGCGTCGGCGCCGGCGCCGGCGCCCGC
GAGGAGGCACGGGTGCACGGTCTGCGGCGTGGAGTTCGCACTCGGGCAGGCGCTGGGCGGGCACATGAGGCGCCACCGCG
CCCACGAGCAGGAGGGGAGCGCTCACGA---GCCGGTAGTCGCCGAGCGGGAGCCCGGCGAGACAAGAAGGGGGCTGCTG
CTGGGCTTGGACCTGAACGCTGCTCCCGCTGAGCAGGCCCTGGAACTCTCTCTCTGGGCCTGACCGAACCAAGGACCGGT
GGGCTGCTGTTCCTTGTGCGATAGCTCCCCT---CCTACTCTTCTCTAACCTAGGGG--TGTGGTGTTTCTTTCTTGTAC
AATATTGGTGGTTGTCAATTGATTGATTTGGATTT--CCACCCCAAAAAA------------------------------
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>chr5D_1
GGACAGAACAA---TAGAAAGGACGGCAGTTAGGACAAATAAGAATCACTGACTGCTCATTTTTATTGCTTGCAACTTAT
AAAGTCTT--AACTTCTTTTGCTATGACTATGATAGTATGATGTGAGCTCAGTAGAACTAATAATGCAATTGTAAAAGAA
GATAAACATCCACAGGGTAAGAATAAAGTTCAGACGACAA---AAAAATATCCGGAGGACGGCAGGCAGGACGAATAACA
CCGCA---------TTTCAATTGCTTAATTGGAGCACCGTTGACTAGAGCAAAACTACAGAAATGGCTAACTAGCCTGC-
----ACATAATTATGCATATAGAGCACTTAGACGAAGTACTAC-------------------------------------
---GTACGTAACAAGTGTCAGTCAGCTGTGAAGGATGGGTTTATCTGTCTAAAGTTCAATCTAGTGAAGGATACTCAGGT
AATGCAG-------------------------------------------------------------------------
------------------------------------------ATATACTCCTCTAAAAAAGGCAGTTATACTAAACACTA
TAGTCGCTCTCAGCGCGCGCGTGGGTGCAGC--AGTCAGATTTCACTACCCCACAGCTGCAAACTCATCT--ATGTAA--
----TACCATCCCAAAATAATAGGAGTACTCGATCT-AAAATTATCCCAAGTCAACTCCCACAACTGCCCTCAATCGATC
TCAACCAACAAGCAGTAGCAGTCTAGCATGTCAACTCCTACGAAGTCGCACCACGCGTTAATCTGTCATCACAGAGCACC
CAAAGTCCAAACGAACAGATAATGATTGCGAGACTTTCGCAAAAGATGCATAGACAATGCTTCAAGTAGCATAATTTTTT
TGAAAGGTCTACAAGTAGTATAGATGTGTAATACACTCTGGTTGCCAAAGAAAAAGTA----------------------
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--------------------------------------TATAAGTCTGTATGATTAATTAGTAGTCATATCATTCTCCAA
GCTAACTAACTGCTTGTACAGTTGTATACTACATGAGTGGATGCGGCCTGCCTATAAATACGT-------CGTCGT----
-------ACAACGGAACGCGAAGAGCTCCACCAATCA---------CGACAATGAAGAGGCTGAGGTTTGGTGAGGAGGC
GGAGGTGGACGGCGCCGCCATAGCCCATGAGGTGATGATGCTGCTCGCCGCGCGGAGCGCCGCGATGGGGGGCGGCGAGC
CGGTGGCGGTG------GCGCGGCCGCGCGCGTTCGAGTGCAAGACGTGCAATCGCCAGTTCCCGTCGTTCCAGGCGCTC
GGCGGCCACCGCGCCAGCCACAAGCGGCCGCGGGGCGATCCGATCAGCGAGCA------------GGCGCCGGTGCCCTC
GAGGAGGCACGGGTGCACGGTGTGCGGCGTGGAGTTCGCGCTCGGGCAGGCGCTGGGCGGGCACATGAGGCGCCACCGCG
CCCACGAGCAGGAGGAGGAGGGCGCGAGGGGGCCGGTGGTCGCCGAGCGGGAGCCCGGCGAGACAAGAAGGGGGCTGCTG
CTGGGCTTGGACCTGAACGCTACTCCCGCTGAGCAGGCCTTGGACCTCTCTCTCTGGGCCTGACCGAACCAAGGACCGGT
GGGCTGCTGTTCCTTCTGCAATAGCTCCTCT---ACTACTCTTTTCTCTAAC----------------------------
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>SNPs
--------S------------------------------------------S----------------------------
--------SS------------------------------------------S---------------------------
-----------------------S-----------------------------S--------------------------
------------------------------S------SS-----------------------S---S-------------
-------------S-------S--S-SSSS--------------S---S-SSS----------S-SSSS-SS--------
----------------------------------------------------------------------------S---
----------------S------------S-----SSSSSSSSSS-SS--------S-----------------------
S------SSSSS--S--------S-----------SSS-SS--------------S----------------------S-
--------------------------------------------------S--------------S--------------
---------------------------S--------S-------------------------------------------
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----------S---------------------------S-----------------------------------------
-----------------------SS-S-SSS-SS--S-------------------------------------------
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------------------------------------------------------------------S-----------S-
------S----SSS-SSSSSSSSSSSSSSS------------------S-------SSSSSSSSSSSSSS----------
------S-SS--SS----------------S-SSSSSSSSSSSSSS----------------------------------
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-----------SSSSSS---------------------------------------------------------------
--------------------------------------S------------------S----------------------
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--------------------S-----------------------------------------------------------
---------------------------------------S------------------------------S---------
-------------------------------SSS-----------------------SS-----S---------------
---------S-S-----------------------SS-------------SSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS
SSSSS
>forward_706
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----------------------------------------------TCACTCGGAGCTGCAAACTT--------------
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>reverse_2833
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--------------------------------TTAGGATAAATGCCGCCGCT----------------------------
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